Wall clock time and date at job start Tue Mar 31 2020 00:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 120.00191 * 2 1 4 4 H 1.48502 * 109.46880 * 239.99927 * 3 2 1 5 5 H 1.48501 * 109.47157 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47242 * 119.99663 * 3 2 1 7 7 C 1.38808 * 119.99919 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00417 * 197.35803 * 7 2 1 9 9 N 1.36941 * 119.99743 * 17.36296 * 7 2 1 10 10 C 1.46926 * 120.63170 * 27.67008 * 9 7 2 11 11 C 1.53194 * 108.77264 * 126.41601 * 10 9 7 12 12 C 1.53037 * 109.31546 * 54.63474 * 11 10 9 13 13 N 1.46505 * 109.45998 * 178.61373 * 12 11 10 14 14 C 1.34773 * 119.99726 * 275.06642 * 13 12 11 15 15 O 1.21278 * 120.00359 * 0.02562 * 14 13 12 16 16 C 1.50705 * 119.99507 * 180.02562 * 14 13 12 17 17 H 1.08997 * 115.52641 * 325.49473 * 16 14 13 18 18 C 1.52996 * 117.46026 * 110.96270 * 16 14 13 19 19 H 1.09002 * 119.30152 * 356.28822 * 18 16 14 20 20 C 1.54270 * 118.19998 * 201.21293 * 18 16 14 21 21 C 1.54892 * 104.19143 * 272.21109 * 20 18 16 22 22 C 1.54881 * 102.75260 * 37.93918 * 21 20 18 23 23 C 1.53000 * 117.45573 * 180.02562 * 16 14 13 24 24 H 1.08999 * 119.29930 * 3.70293 * 23 16 14 25 25 C 1.53039 * 109.53825 * 298.63656 * 12 11 10 26 26 C 1.46930 * 120.62921 * 207.69585 * 9 7 2 27 27 H 0.97007 * 119.99487 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.58752 * 246.19919 * 10 9 7 29 29 H 1.08998 * 109.58713 * 6.63208 * 10 9 7 30 30 H 1.09001 * 109.49473 * 174.58845 * 11 10 9 31 31 H 1.09007 * 109.49602 * 294.68211 * 11 10 9 32 32 H 1.09000 * 109.44846 * 58.64624 * 12 11 10 33 33 H 0.96997 * 119.99676 * 95.07345 * 13 12 11 34 34 H 1.08998 * 110.48185 * 30.88326 * 20 18 16 35 35 H 1.08991 * 110.49036 * 153.39944 * 20 18 16 36 36 H 1.09006 * 110.75365 * 156.25716 * 21 20 18 37 37 H 1.08997 * 110.75284 * 279.43376 * 21 20 18 38 38 H 1.08997 * 110.48934 * 203.37920 * 22 21 20 39 39 H 1.08999 * 110.48632 * 80.73597 * 22 21 20 40 40 H 1.09001 * 109.49524 * 301.41138 * 25 12 11 41 41 H 1.09004 * 109.52525 * 181.33327 * 25 12 11 42 42 H 1.08999 * 109.58472 * 353.36739 * 26 9 7 43 43 H 1.08994 * 109.58704 * 113.79422 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0533 -1.2234 0.2796 9 7 1.3722 -2.3612 -0.3529 10 6 0.2276 -2.3349 -1.2737 11 6 0.5005 -3.3055 -2.4271 12 6 0.8182 -4.6904 -1.8588 13 7 1.0472 -5.6292 -2.9600 14 6 0.0033 -6.2493 -3.5449 15 8 -1.1257 -6.0300 -3.1599 16 6 0.2389 -7.2154 -4.6773 17 1 1.0669 -6.9676 -5.3414 18 6 -0.0300 -8.6972 -4.4080 19 1 -0.3193 -9.0134 -3.4058 20 6 0.6470 -9.7390 -5.3225 21 6 -0.3411 -9.9068 -6.5035 22 6 -0.8591 -8.4638 -6.7236 23 6 -0.9876 -7.8861 -5.2991 24 1 -1.9822 -7.6047 -4.9533 25 6 2.0739 -4.6104 -0.9876 26 6 1.8189 -3.6546 0.1821 27 1 -0.4850 0.8401 -0.0004 28 1 -0.6745 -2.6410 -0.7442 29 1 0.0985 -1.3267 -1.6674 30 1 -0.3804 -3.3678 -3.0662 31 1 1.3492 -2.9481 -3.0104 32 1 -0.0210 -5.0363 -1.2553 33 1 1.9501 -5.8043 -3.2681 34 1 1.6075 -9.3667 -5.6788 35 1 0.7770 -10.6833 -4.7942 36 1 0.1761 -10.2712 -7.3911 37 1 -1.1574 -10.5761 -6.2319 38 1 -1.8302 -8.4783 -7.2183 39 1 -0.1417 -7.8857 -7.3061 40 1 2.9077 -4.2407 -1.5844 41 1 2.3136 -5.6014 -0.6021 42 1 2.7397 -3.5172 0.7490 43 1 1.0466 -4.0683 0.8304 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251088691.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:19 Heat of formation + Delta-G solvation = -3.256297 kcal Electronic energy + Delta-G solvation = -21780.518097 eV Core-core repulsion = 18633.165736 eV Total energy + Delta-G solvation = -3147.352362 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.44348 -38.73729 -37.12268 -34.37356 -32.29894 -31.78321 -30.03069 -29.44102 -28.50432 -25.47637 -23.92762 -22.22737 -21.78417 -20.81644 -20.07433 -19.85574 -19.19646 -17.45160 -16.69801 -15.95796 -15.25991 -15.23546 -14.70011 -14.36494 -13.85867 -13.60541 -13.48622 -13.40575 -13.04233 -12.96511 -12.54350 -12.37102 -11.73003 -11.55171 -11.47958 -11.42352 -11.14291 -11.10716 -10.92365 -10.70798 -10.40363 -10.29231 -10.23880 -10.06489 -10.01664 -9.75259 -9.74202 -9.39110 -8.68131 -8.40435 -6.68080 -5.77358 -3.20131 2.57500 3.26616 3.39402 3.45223 3.46117 3.59984 4.32774 4.46951 4.50432 4.50937 4.91774 4.97216 5.02380 5.15052 5.19386 5.31520 5.33926 5.42590 5.43965 5.47073 5.55198 5.64929 5.73204 5.79394 5.83859 5.86234 6.03057 6.09533 6.15534 6.25408 6.38123 6.45657 6.62498 6.66289 6.78854 6.93246 6.96466 7.39063 7.68543 7.77069 7.80238 8.45034 8.46757 9.21938 9.85422 10.42102 11.31185 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.042489 B = 0.003221 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.830132 B = 8690.389972 C = 8907.522223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.256 4.256 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.174 3.826 11 C -0.146 4.146 12 C 0.151 3.849 13 N -0.720 5.720 14 C 0.539 3.461 15 O -0.540 6.540 16 C -0.161 4.161 17 H 0.118 0.882 18 C -0.141 4.141 19 H 0.114 0.886 20 C -0.096 4.096 21 C -0.123 4.123 22 C -0.097 4.097 23 C -0.132 4.132 24 H 0.122 0.878 25 C -0.138 4.138 26 C 0.149 3.851 27 H 0.255 0.745 28 H 0.020 0.980 29 H 0.090 0.910 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.081 0.919 33 H 0.395 0.605 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.055 0.945 42 H 0.058 0.942 43 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.527 -18.606 -12.059 22.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.385 4.385 8 H 0.083 0.917 9 N -0.316 5.316 10 C 0.047 3.953 11 C -0.187 4.187 12 C 0.047 3.953 13 N -0.369 5.369 14 C 0.325 3.675 15 O -0.417 6.417 16 C -0.182 4.182 17 H 0.136 0.864 18 C -0.160 4.160 19 H 0.132 0.868 20 C -0.133 4.133 21 C -0.161 4.161 22 C -0.134 4.134 23 C -0.150 4.150 24 H 0.140 0.860 25 C -0.178 4.178 26 C 0.021 3.979 27 H 0.065 0.935 28 H 0.038 0.962 29 H 0.108 0.892 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.099 0.901 33 H 0.229 0.771 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 1.591 -18.280 -11.740 21.784 hybrid contribution 0.907 0.894 -0.127 1.280 sum 2.498 -17.386 -11.867 21.198 Atomic orbital electron populations 1.70032 1.05275 1.25674 1.53558 1.25054 0.95277 0.98453 1.00849 0.86367 0.78902 0.83366 0.78091 1.21056 1.21626 1.20875 1.19138 0.92686 0.84869 1.41822 0.91665 1.44107 1.35877 1.01388 1.50182 1.20762 0.88626 0.98197 0.87681 1.22564 1.00443 0.95134 1.00525 1.21049 0.98692 0.88837 0.86683 1.46250 1.09044 1.44923 1.36716 1.19543 0.85018 0.80443 0.82531 1.90703 1.22761 1.64301 1.63939 1.22407 1.01959 0.93815 0.99994 0.86446 1.23245 1.03145 0.89199 1.00385 0.86841 1.21994 0.98254 0.97798 0.95256 1.22695 0.98702 0.96807 0.97863 1.21994 1.01653 0.95298 0.94481 1.23255 0.95396 1.01807 0.94570 0.85999 1.22334 0.96701 0.99709 0.99098 1.20837 0.97955 0.86751 0.92321 0.93516 0.96167 0.89221 0.92881 0.92691 0.90135 0.77145 0.91202 0.90940 0.91261 0.91154 0.90864 0.91245 0.91860 0.92648 0.92333 0.96218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.58 11.19 55.49 0.62 -25.95 16 2 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 3 Si 0.90 21.78 29.59 -169.99 -5.03 16.75 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.26 -7.04 9.59 -15.06 -0.14 -7.18 16 8 H 0.07 1.74 7.89 -52.49 -0.41 1.33 16 9 N -0.59 -14.99 2.99 -172.32 -0.52 -15.51 16 10 C 0.17 4.30 5.31 -3.71 -0.02 4.28 16 11 C -0.15 -3.00 5.65 -26.61 -0.15 -3.15 16 12 C 0.15 2.69 2.41 -67.89 -0.16 2.53 16 13 N -0.72 -10.44 5.08 -53.76 -0.27 -10.71 16 14 C 0.54 8.27 7.57 -10.98 -0.08 8.19 16 15 O -0.54 -10.58 15.99 5.56 0.09 -10.50 16 16 C -0.16 -1.82 5.73 -91.77 -0.53 -2.34 16 17 H 0.12 1.10 8.14 -51.93 -0.42 0.67 16 18 C -0.14 -1.40 6.64 -89.48 -0.59 -1.99 16 19 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 20 C -0.10 -0.70 6.63 -25.07 -0.17 -0.87 16 21 C -0.12 -0.83 6.91 -24.74 -0.17 -1.00 16 22 C -0.10 -0.78 6.62 -25.08 -0.17 -0.94 16 23 C -0.13 -1.42 6.39 -89.49 -0.57 -1.99 16 24 H 0.12 1.54 7.78 -51.93 -0.40 1.13 16 25 C -0.14 -2.34 5.55 -26.61 -0.15 -2.48 16 26 C 0.15 3.09 6.52 -3.71 -0.02 3.07 16 27 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 28 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.09 2.47 6.04 -51.93 -0.31 2.16 16 30 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.08 1.62 7.58 -51.93 -0.39 1.23 16 33 H 0.40 4.53 8.60 -40.82 -0.35 4.18 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 43 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 340.70 15.07 5.13 5.13 Total: -1.00 -31.69 340.70 -10.33 -42.02 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -7.34 Total: 2.66 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: -3.01 Total: -3.90 kcal Atomic # 7 Polarization: -52.00 SS G_CDS: -0.17 Total: -52.17 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.09 Total: -10.50 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.75 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.69 -10.33 -42.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251088691.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.761 kcal (2) G-P(sol) polarization free energy of solvation -31.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds