Wall clock time and date at job start Tue Mar 31 2020 00:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 120.00191 * 2 1 4 4 H 1.48502 * 109.46880 * 239.99927 * 3 2 1 5 5 H 1.48501 * 109.47157 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47242 * 119.99663 * 3 2 1 7 7 C 1.38808 * 119.99919 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00417 * 197.35803 * 7 2 1 9 9 N 1.36941 * 119.99743 * 17.36296 * 7 2 1 10 10 C 1.46926 * 120.63170 * 27.67008 * 9 7 2 11 11 C 1.53194 * 108.77264 * 126.41601 * 10 9 7 12 12 C 1.53037 * 109.31546 * 54.63474 * 11 10 9 13 13 N 1.46505 * 109.45998 * 178.61373 * 12 11 10 14 14 C 1.34773 * 119.99726 * 275.06642 * 13 12 11 15 15 O 1.21278 * 120.00359 * 0.02562 * 14 13 12 16 16 C 1.50705 * 119.99507 * 180.02562 * 14 13 12 17 17 H 1.08997 * 115.52641 * 325.49473 * 16 14 13 18 18 C 1.52996 * 117.46026 * 110.96270 * 16 14 13 19 19 H 1.09002 * 119.30152 * 356.28822 * 18 16 14 20 20 C 1.54270 * 118.19998 * 201.21293 * 18 16 14 21 21 C 1.54892 * 104.19143 * 272.21109 * 20 18 16 22 22 C 1.54881 * 102.75260 * 37.93918 * 21 20 18 23 23 C 1.53000 * 117.45573 * 180.02562 * 16 14 13 24 24 H 1.08999 * 119.29930 * 3.70293 * 23 16 14 25 25 C 1.53039 * 109.53825 * 298.63656 * 12 11 10 26 26 C 1.46930 * 120.62921 * 207.69585 * 9 7 2 27 27 H 0.97007 * 119.99487 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.58752 * 246.19919 * 10 9 7 29 29 H 1.08998 * 109.58713 * 6.63208 * 10 9 7 30 30 H 1.09001 * 109.49473 * 174.58845 * 11 10 9 31 31 H 1.09007 * 109.49602 * 294.68211 * 11 10 9 32 32 H 1.09000 * 109.44846 * 58.64624 * 12 11 10 33 33 H 0.96997 * 119.99676 * 95.07345 * 13 12 11 34 34 H 1.08998 * 110.48185 * 30.88326 * 20 18 16 35 35 H 1.08991 * 110.49036 * 153.39944 * 20 18 16 36 36 H 1.09006 * 110.75365 * 156.25716 * 21 20 18 37 37 H 1.08997 * 110.75284 * 279.43376 * 21 20 18 38 38 H 1.08997 * 110.48934 * 203.37920 * 22 21 20 39 39 H 1.08999 * 110.48632 * 80.73597 * 22 21 20 40 40 H 1.09001 * 109.49524 * 301.41138 * 25 12 11 41 41 H 1.09004 * 109.52525 * 181.33327 * 25 12 11 42 42 H 1.08999 * 109.58472 * 353.36739 * 26 9 7 43 43 H 1.08994 * 109.58704 * 113.79422 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0533 -1.2234 0.2796 9 7 1.3722 -2.3612 -0.3529 10 6 0.2276 -2.3349 -1.2737 11 6 0.5005 -3.3055 -2.4271 12 6 0.8182 -4.6904 -1.8588 13 7 1.0472 -5.6292 -2.9600 14 6 0.0033 -6.2493 -3.5449 15 8 -1.1257 -6.0300 -3.1599 16 6 0.2389 -7.2154 -4.6773 17 1 1.0669 -6.9676 -5.3414 18 6 -0.0300 -8.6972 -4.4080 19 1 -0.3193 -9.0134 -3.4058 20 6 0.6470 -9.7390 -5.3225 21 6 -0.3411 -9.9068 -6.5035 22 6 -0.8591 -8.4638 -6.7236 23 6 -0.9876 -7.8861 -5.2991 24 1 -1.9822 -7.6047 -4.9533 25 6 2.0739 -4.6104 -0.9876 26 6 1.8189 -3.6546 0.1821 27 1 -0.4850 0.8401 -0.0004 28 1 -0.6745 -2.6410 -0.7442 29 1 0.0985 -1.3267 -1.6674 30 1 -0.3804 -3.3678 -3.0662 31 1 1.3492 -2.9481 -3.0104 32 1 -0.0210 -5.0363 -1.2553 33 1 1.9501 -5.8043 -3.2681 34 1 1.6075 -9.3667 -5.6788 35 1 0.7770 -10.6833 -4.7942 36 1 0.1761 -10.2712 -7.3911 37 1 -1.1574 -10.5761 -6.2319 38 1 -1.8302 -8.4783 -7.2183 39 1 -0.1417 -7.8857 -7.3061 40 1 2.9077 -4.2407 -1.5844 41 1 2.3136 -5.6014 -0.6021 42 1 2.7397 -3.5172 0.7490 43 1 1.0466 -4.0683 0.8304 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251088691.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:18 Heat of formation + Delta-G solvation = -22.493791 kcal Electronic energy + Delta-G solvation = -21781.352298 eV Core-core repulsion = 18633.165736 eV Total energy + Delta-G solvation = -3148.186562 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.49273 -39.91504 -38.66584 -36.02503 -33.96480 -32.74293 -31.75781 -31.17217 -29.12595 -27.21417 -25.27429 -23.94531 -23.29601 -21.61118 -21.34340 -20.72902 -20.61835 -18.91535 -18.30517 -17.31460 -16.80163 -16.17347 -16.13817 -15.64622 -15.38654 -15.32111 -14.89933 -14.58962 -14.33293 -14.11984 -14.00339 -13.74628 -13.22259 -13.03908 -12.68282 -12.57040 -12.45020 -12.28030 -12.14929 -12.10045 -11.97562 -11.88260 -11.67552 -11.56917 -11.44002 -11.10289 -10.95621 -10.59289 -10.58823 -10.02860 -8.74403 -7.88968 -5.35360 1.43507 1.46919 1.49904 1.56723 2.09975 2.50795 2.70942 3.26618 3.49930 3.64468 3.70800 3.77631 3.83603 4.03161 4.11846 4.22287 4.26489 4.29795 4.43944 4.50130 4.53653 4.63282 4.69697 4.76959 4.83958 4.84826 4.99122 5.02527 5.04457 5.09958 5.18067 5.23679 5.23972 5.28363 5.29686 5.42969 5.50801 5.54108 5.61741 5.66528 6.36432 6.59126 7.11148 7.27351 7.82108 8.35077 9.18145 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.042489 B = 0.003221 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.830132 B = 8690.389972 C = 8907.522223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.055 4.055 3 Si 0.971 3.029 4 H -0.276 1.276 5 H -0.297 1.297 6 H -0.272 1.272 7 C -0.264 4.264 8 H 0.075 0.925 9 N -0.610 5.610 10 C 0.183 3.817 11 C -0.130 4.130 12 C 0.161 3.839 13 N -0.705 5.705 14 C 0.534 3.466 15 O -0.591 6.591 16 C -0.161 4.161 17 H 0.147 0.853 18 C -0.131 4.131 19 H 0.100 0.900 20 C -0.090 4.090 21 C -0.119 4.119 22 C -0.092 4.092 23 C -0.146 4.146 24 H 0.093 0.907 25 C -0.121 4.121 26 C 0.141 3.859 27 H 0.250 0.750 28 H -0.013 1.013 29 H 0.056 0.944 30 H 0.042 0.958 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.416 0.584 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.091 0.909 42 H 0.069 0.931 43 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.350 -20.566 -13.668 25.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.250 4.250 3 Si 0.799 3.201 4 H -0.202 1.202 5 H -0.224 1.224 6 H -0.198 1.198 7 C -0.394 4.394 8 H 0.093 0.907 9 N -0.333 5.333 10 C 0.056 3.944 11 C -0.170 4.170 12 C 0.056 3.944 13 N -0.355 5.355 14 C 0.322 3.678 15 O -0.471 6.471 16 C -0.182 4.182 17 H 0.164 0.836 18 C -0.149 4.149 19 H 0.118 0.882 20 C -0.127 4.127 21 C -0.156 4.156 22 C -0.130 4.130 23 C -0.165 4.165 24 H 0.111 0.889 25 C -0.160 4.160 26 C 0.015 3.985 27 H 0.059 0.941 28 H 0.005 0.995 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.253 0.747 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.108 0.892 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.110 0.890 42 H 0.088 0.912 43 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges 4.476 -20.287 -13.363 24.702 hybrid contribution -0.035 1.463 0.434 1.526 sum 4.441 -18.824 -12.929 23.265 Atomic orbital electron populations 1.70214 1.06976 1.25990 1.55363 1.25897 0.96004 1.01905 1.01217 0.85284 0.77469 0.78827 0.78523 1.20169 1.22370 1.19762 1.19558 0.93228 0.85843 1.40774 0.90731 1.44357 1.35632 1.02609 1.50722 1.20460 0.87792 0.97389 0.88721 1.22306 1.00238 0.95933 0.98564 1.20664 0.98541 0.87738 0.87447 1.45966 1.10158 1.43782 1.35631 1.20305 0.84180 0.80433 0.82906 1.90689 1.24864 1.65967 1.65601 1.22375 1.03231 0.93669 0.98905 0.83565 1.23356 1.02456 0.88911 1.00210 0.88165 1.22042 0.98655 0.97247 0.94766 1.22699 0.98708 0.95767 0.98446 1.22022 1.02326 0.96117 0.92513 1.23320 0.93993 1.02334 0.96822 0.88922 1.22132 0.96098 1.00459 0.97316 1.21048 0.97874 0.85579 0.93987 0.94149 0.99484 0.92559 0.93900 0.91878 0.92856 0.74728 0.89740 0.89797 0.89233 0.91191 0.90588 0.90251 0.90472 0.89039 0.91223 0.97183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.50 11.19 21.65 0.24 -57.26 16 2 C -0.06 -3.13 4.91 84.86 0.42 -2.72 16 3 Si 0.97 45.21 29.59 68.60 2.03 47.24 16 4 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 5 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 6 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 7 C -0.26 -14.59 9.59 84.03 0.81 -13.78 16 8 H 0.08 3.91 7.89 -2.91 -0.02 3.88 16 9 N -0.61 -31.22 2.99 -699.11 -2.09 -33.31 16 10 C 0.18 9.48 5.31 86.36 0.46 9.94 16 11 C -0.13 -5.41 5.65 30.67 0.17 -5.24 16 12 C 0.16 5.65 2.41 45.02 0.11 5.75 16 13 N -0.70 -19.18 5.08 -442.40 -2.25 -21.42 16 14 C 0.53 16.07 7.57 87.66 0.66 16.73 16 15 O -0.59 -23.94 15.99 -3.02 -0.05 -23.99 16 16 C -0.16 -3.34 5.73 -11.54 -0.07 -3.41 16 17 H 0.15 2.19 8.14 -2.39 -0.02 2.17 16 18 C -0.13 -2.34 6.64 -10.06 -0.07 -2.40 16 19 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 20 C -0.09 -1.00 6.63 31.67 0.21 -0.79 16 21 C -0.12 -1.21 6.91 31.88 0.22 -0.99 16 22 C -0.09 -1.27 6.62 31.66 0.21 -1.06 16 23 C -0.15 -3.01 6.39 -10.06 -0.06 -3.08 16 24 H 0.09 2.45 7.78 -2.39 -0.02 2.44 16 25 C -0.12 -3.78 5.55 30.67 0.17 -3.61 16 26 C 0.14 5.76 6.52 86.36 0.56 6.32 16 27 H 0.25 14.83 8.31 -92.70 -0.77 14.06 16 28 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 29 H 0.06 3.27 6.04 -2.39 -0.01 3.26 16 30 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.06 2.51 8.14 -2.38 -0.02 2.49 16 32 H 0.05 2.20 7.58 -2.39 -0.02 2.18 16 33 H 0.42 8.08 8.60 -92.71 -0.80 7.28 16 34 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 37 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 41 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16 42 H 0.07 2.67 7.93 -2.39 -0.02 2.65 16 43 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 Total: -1.00 -72.18 340.70 1.87 -70.31 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: 0.19 Total: 16.74 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: 3.80 Total: 1.69 kcal Atomic # 7 Polarization: -107.90 SS G_CDS: -4.10 Total: -111.99 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -0.05 Total: -23.99 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -72.18 1.87 -70.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251088691.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.814 kcal (2) G-P(sol) polarization free energy of solvation -72.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds