Wall clock time and date at job start Tue Mar 31 2020 00:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86794 * 119.99798 * 2 1 4 4 H 1.48504 * 109.47248 * 239.99955 * 3 2 1 5 5 H 1.48500 * 109.47537 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47481 * 119.99935 * 3 2 1 7 7 C 1.38809 * 120.00207 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00111 * 197.60222 * 7 2 1 9 9 N 1.36942 * 119.99783 * 17.60181 * 7 2 1 10 10 C 1.46966 * 120.59213 * 208.21587 * 9 7 2 11 11 C 1.53370 * 108.63467 * 235.20268 * 10 9 7 12 12 N 1.46968 * 108.63548 * 310.57653 * 11 10 9 13 13 C 1.34768 * 120.59502 * 235.20411 * 12 11 10 14 14 O 1.21280 * 119.99753 * 359.97438 * 13 12 11 15 15 C 1.50698 * 120.00330 * 179.72328 * 13 12 11 16 16 H 1.09003 * 115.57006 * 325.86108 * 15 13 12 17 17 C 1.52304 * 117.53950 * 111.70687 * 15 13 12 18 18 H 1.08997 * 115.91230 * 0.84561 * 17 15 13 19 19 C 1.52081 * 119.83970 * 217.20078 * 17 15 13 20 20 C 1.52871 * 110.51276 * 310.44587 * 19 17 15 21 21 C 1.53298 * 108.59133 * 305.11216 * 20 19 17 22 22 C 1.51056 * 108.39340 * 74.33186 * 21 20 19 23 23 C 1.52290 * 60.58744 * 107.41633 * 17 15 13 24 24 H 1.09005 * 117.29750 * 252.90187 * 23 17 15 25 25 C 1.46970 * 118.80917 * 55.47360 * 12 11 10 26 26 C 1.46966 * 120.59531 * 28.18827 * 9 7 2 27 27 H 0.97005 * 120.00181 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.61188 * 115.45859 * 10 9 7 29 29 H 1.09007 * 109.75197 * 355.03365 * 10 9 7 30 30 H 1.08997 * 109.60835 * 190.82870 * 11 10 9 31 31 H 1.09002 * 109.60656 * 70.31996 * 11 10 9 32 32 H 1.09004 * 109.26748 * 70.71284 * 19 17 15 33 33 H 1.08999 * 109.26559 * 190.17715 * 19 17 15 34 34 H 1.09006 * 109.61755 * 64.84251 * 20 19 17 35 35 H 1.08994 * 109.61626 * 185.19906 * 20 19 17 36 36 H 1.09000 * 109.61758 * 194.17253 * 21 20 19 37 37 H 1.09000 * 109.61512 * 314.53238 * 21 20 19 38 38 H 1.08992 * 109.13983 * 184.71963 * 22 21 20 39 39 H 1.08998 * 108.57147 * 65.72874 * 22 21 20 40 40 H 1.09001 * 109.60925 * 64.27048 * 25 12 11 41 41 H 1.09002 * 109.60601 * 184.77645 * 25 12 11 42 42 H 1.08995 * 109.61053 * 244.54189 * 26 9 7 43 43 H 1.09005 * 109.60756 * 4.88464 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0523 -1.2239 0.2834 9 7 1.3736 -2.3604 -0.3576 10 6 1.8121 -3.6537 0.1858 11 6 2.1167 -4.5985 -0.9833 12 7 0.9825 -4.5707 -1.9174 13 6 0.3560 -5.7106 -2.2699 14 8 0.7274 -6.7720 -1.8156 15 6 -0.8097 -5.6659 -3.2240 16 1 -1.4463 -4.7844 -3.1479 17 6 -0.6122 -6.2748 -4.6060 18 1 0.3663 -6.7152 -4.7970 19 6 -1.2499 -5.6180 -5.8204 20 6 -2.7300 -5.3364 -5.5618 21 6 -3.4112 -6.6453 -5.1463 22 6 -3.0024 -6.9660 -3.7279 23 6 -1.4822 -6.9988 -3.5870 24 1 -1.0743 -7.9023 -3.1335 25 6 0.5476 -3.2780 -2.4651 26 6 0.2394 -2.3326 -1.2917 27 1 -0.4851 0.8401 0.0004 28 1 1.0204 -4.0786 0.8029 29 1 2.7103 -3.5149 0.7877 30 1 2.2564 -5.6121 -0.6075 31 1 3.0204 -4.2676 -1.4951 32 1 -0.7369 -4.6800 -6.0328 33 1 -1.1548 -6.2818 -6.6797 34 1 -2.8285 -4.6025 -4.7618 35 1 -3.1934 -4.9518 -6.4702 36 1 -4.4935 -6.5280 -5.2011 37 1 -3.0961 -7.4491 -5.8116 38 1 -3.4122 -7.9366 -3.4487 39 1 -3.4100 -6.2005 -3.0676 40 1 1.3421 -2.8553 -3.0800 41 1 -0.3493 -3.4194 -3.0683 42 1 -0.6643 -2.6634 -0.7798 43 1 0.0978 -1.3183 -1.6650 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252631492.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:13:46 Heat of formation + Delta-G solvation = 2.905462 kcal Electronic energy + Delta-G solvation = -22548.472206 eV Core-core repulsion = 19401.387039 eV Total energy + Delta-G solvation = -3147.085168 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.43057 -38.60021 -36.67087 -33.82804 -33.21472 -31.34037 -30.92252 -30.15339 -27.18125 -25.40289 -23.65153 -22.98609 -22.65614 -21.85080 -20.07904 -18.85225 -18.23860 -17.38804 -16.21333 -15.77850 -15.13537 -14.87198 -14.68566 -14.23394 -14.08332 -13.76910 -13.64257 -13.38072 -13.31737 -13.16939 -12.45449 -12.35670 -12.17458 -11.81735 -11.65449 -11.34295 -11.19906 -10.94309 -10.81788 -10.74540 -10.52223 -10.39044 -10.24270 -10.05876 -9.86353 -9.78212 -9.74711 -9.27060 -8.60076 -8.21484 -6.72183 -5.87068 -3.31183 2.82694 3.34021 3.39858 3.40038 3.44174 3.85606 4.42719 4.52861 4.64530 4.69827 4.89509 4.92455 5.08073 5.21442 5.25185 5.30693 5.40044 5.42980 5.50726 5.60072 5.78483 5.81354 5.84224 5.87059 5.90169 6.00245 6.01162 6.11519 6.14570 6.19538 6.21470 6.22609 6.35200 6.36120 6.44918 6.78713 6.94103 7.21731 7.44932 7.70690 7.96113 8.34555 8.62094 9.10724 9.73366 10.30691 11.20711 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.024263 B = 0.004488 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.733852 B = 6237.368140 C = 6893.425962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.004 3.996 3 Si 0.904 3.096 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.257 4.257 8 H 0.067 0.933 9 N -0.591 5.591 10 C 0.132 3.868 11 C 0.095 3.905 12 N -0.592 5.592 13 C 0.538 3.462 14 O -0.563 6.563 15 C -0.184 4.184 16 H 0.125 0.875 17 C -0.112 4.112 18 H 0.100 0.900 19 C -0.089 4.089 20 C -0.125 4.125 21 C -0.118 4.118 22 C -0.091 4.091 23 C -0.113 4.113 24 H 0.114 0.886 25 C 0.081 3.919 26 C 0.157 3.843 27 H 0.256 0.744 28 H 0.023 0.977 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.073 0.927 42 H 0.023 0.977 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.977 -10.363 -11.406 16.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.195 4.195 3 Si 0.734 3.266 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.386 4.386 8 H 0.085 0.915 9 N -0.314 5.314 10 C 0.005 3.995 11 C -0.029 4.029 12 N -0.323 5.323 13 C 0.327 3.673 14 O -0.443 6.443 15 C -0.205 4.205 16 H 0.143 0.857 17 C -0.131 4.131 18 H 0.119 0.881 19 C -0.126 4.126 20 C -0.163 4.163 21 C -0.155 4.155 22 C -0.128 4.128 23 C -0.132 4.132 24 H 0.132 0.868 25 C -0.043 4.043 26 C 0.030 3.970 27 H 0.066 0.934 28 H 0.041 0.959 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.091 0.909 42 H 0.041 0.959 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.874 -10.722 -11.121 16.199 hybrid contribution 0.475 1.103 0.145 1.210 sum -4.399 -9.619 -10.976 15.243 Atomic orbital electron populations 1.70009 1.05316 1.25826 1.53545 1.25054 0.95283 0.98514 1.00607 0.86340 0.78927 0.83115 0.78221 1.20940 1.21573 1.20814 1.19176 0.92875 0.84736 1.41809 0.91510 1.43977 1.36688 1.01549 1.49168 1.21295 0.98404 0.87043 0.92780 1.22203 0.87749 1.01008 0.91909 1.47979 1.32670 1.06843 1.44849 1.19641 0.82912 0.83461 0.81303 1.90612 1.67161 1.29883 1.56662 1.22507 1.00424 0.99731 0.97848 0.85745 1.21857 1.00500 1.01574 0.89152 0.88149 1.20891 0.95401 1.00481 0.95841 1.21653 0.95291 0.97736 1.01596 1.21244 0.99777 0.97772 0.96742 1.20736 0.92768 1.02144 0.97194 1.22322 0.93968 0.95182 1.01685 0.86807 1.22774 0.99186 0.83763 0.98571 1.21271 0.89237 0.98620 0.87843 0.93429 0.95912 0.91546 0.90067 0.92027 0.91208 0.91213 0.91553 0.91716 0.91853 0.91765 0.91450 0.91468 0.91902 0.90870 0.95887 0.88212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.38 11.20 55.49 0.62 -24.76 16 2 C 0.00 0.11 4.90 -17.43 -0.09 0.03 16 3 Si 0.90 21.07 29.59 -169.99 -5.03 16.04 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 7 C -0.26 -6.86 9.58 -15.06 -0.14 -7.00 16 8 H 0.07 1.75 7.89 -52.49 -0.41 1.34 16 9 N -0.59 -14.56 2.97 -171.76 -0.51 -15.07 16 10 C 0.13 2.82 6.67 -3.60 -0.02 2.80 16 11 C 0.10 1.82 6.59 -3.60 -0.02 1.80 16 12 N -0.59 -11.14 2.94 -172.21 -0.51 -11.65 16 13 C 0.54 9.82 7.48 -10.99 -0.08 9.74 16 14 O -0.56 -11.73 15.67 5.56 0.09 -11.64 16 15 C -0.18 -2.64 4.22 -91.79 -0.39 -3.03 16 16 H 0.12 1.72 5.73 -51.93 -0.30 1.42 16 17 C -0.11 -1.34 5.71 -91.81 -0.52 -1.87 16 18 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 19 C -0.09 -0.85 5.93 -27.27 -0.16 -1.01 16 20 C -0.13 -1.13 5.70 -26.64 -0.15 -1.28 16 21 C -0.12 -1.02 5.89 -27.55 -0.16 -1.18 16 22 C -0.09 -0.93 5.67 -27.86 -0.16 -1.09 16 23 C -0.11 -1.42 5.77 -90.79 -0.52 -1.94 16 24 H 0.11 1.59 7.67 -51.93 -0.40 1.19 16 25 C 0.08 1.49 6.54 -3.37 -0.02 1.47 16 26 C 0.16 3.59 5.53 -3.37 -0.02 3.57 16 27 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 28 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 1.35 7.94 -51.93 -0.41 0.94 16 30 H 0.08 1.52 6.99 -51.93 -0.36 1.16 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.65 7.10 -51.93 -0.37 0.28 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.53 8.05 -51.93 -0.42 0.12 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.72 8.06 -51.93 -0.42 0.30 16 40 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.07 1.14 5.51 -51.93 -0.29 0.86 16 42 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.10 2.50 5.98 -51.93 -0.31 2.19 16 LS Contribution 330.51 15.07 4.98 4.98 Total: -1.00 -30.18 330.51 -9.88 -40.05 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -7.05 Total: 1.05 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: -2.47 Total: 0.99 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: -0.39 Total: -51.47 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.09 Total: -11.64 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.04 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.18 -9.88 -40.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252631492.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.959 kcal (2) G-P(sol) polarization free energy of solvation -30.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds