Wall clock time and date at job start Tue Mar 31 2020 00:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86794 * 119.99798 * 2 1 4 4 H 1.48504 * 109.47248 * 239.99955 * 3 2 1 5 5 H 1.48500 * 109.47537 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47481 * 119.99935 * 3 2 1 7 7 C 1.38809 * 120.00207 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00111 * 197.60222 * 7 2 1 9 9 N 1.36942 * 119.99783 * 17.60181 * 7 2 1 10 10 C 1.46966 * 120.59213 * 208.21587 * 9 7 2 11 11 C 1.53370 * 108.63467 * 235.20268 * 10 9 7 12 12 N 1.46968 * 108.63548 * 310.57653 * 11 10 9 13 13 C 1.34768 * 120.59502 * 235.20411 * 12 11 10 14 14 O 1.21280 * 119.99753 * 359.97438 * 13 12 11 15 15 C 1.50698 * 120.00330 * 179.72328 * 13 12 11 16 16 H 1.09003 * 115.57006 * 325.86108 * 15 13 12 17 17 C 1.52304 * 117.53950 * 111.70687 * 15 13 12 18 18 H 1.08997 * 115.91230 * 0.84561 * 17 15 13 19 19 C 1.52081 * 119.83970 * 217.20078 * 17 15 13 20 20 C 1.52871 * 110.51276 * 310.44587 * 19 17 15 21 21 C 1.53298 * 108.59133 * 305.11216 * 20 19 17 22 22 C 1.51056 * 108.39340 * 74.33186 * 21 20 19 23 23 C 1.52290 * 60.58744 * 107.41633 * 17 15 13 24 24 H 1.09005 * 117.29750 * 252.90187 * 23 17 15 25 25 C 1.46970 * 118.80917 * 55.47360 * 12 11 10 26 26 C 1.46966 * 120.59531 * 28.18827 * 9 7 2 27 27 H 0.97005 * 120.00181 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.61188 * 115.45859 * 10 9 7 29 29 H 1.09007 * 109.75197 * 355.03365 * 10 9 7 30 30 H 1.08997 * 109.60835 * 190.82870 * 11 10 9 31 31 H 1.09002 * 109.60656 * 70.31996 * 11 10 9 32 32 H 1.09004 * 109.26748 * 70.71284 * 19 17 15 33 33 H 1.08999 * 109.26559 * 190.17715 * 19 17 15 34 34 H 1.09006 * 109.61755 * 64.84251 * 20 19 17 35 35 H 1.08994 * 109.61626 * 185.19906 * 20 19 17 36 36 H 1.09000 * 109.61758 * 194.17253 * 21 20 19 37 37 H 1.09000 * 109.61512 * 314.53238 * 21 20 19 38 38 H 1.08992 * 109.13983 * 184.71963 * 22 21 20 39 39 H 1.08998 * 108.57147 * 65.72874 * 22 21 20 40 40 H 1.09001 * 109.60925 * 64.27048 * 25 12 11 41 41 H 1.09002 * 109.60601 * 184.77645 * 25 12 11 42 42 H 1.08995 * 109.61053 * 244.54189 * 26 9 7 43 43 H 1.09005 * 109.60756 * 4.88464 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0523 -1.2239 0.2834 9 7 1.3736 -2.3604 -0.3576 10 6 1.8121 -3.6537 0.1858 11 6 2.1167 -4.5985 -0.9833 12 7 0.9825 -4.5707 -1.9174 13 6 0.3560 -5.7106 -2.2699 14 8 0.7274 -6.7720 -1.8156 15 6 -0.8097 -5.6659 -3.2240 16 1 -1.4463 -4.7844 -3.1479 17 6 -0.6122 -6.2748 -4.6060 18 1 0.3663 -6.7152 -4.7970 19 6 -1.2499 -5.6180 -5.8204 20 6 -2.7300 -5.3364 -5.5618 21 6 -3.4112 -6.6453 -5.1463 22 6 -3.0024 -6.9660 -3.7279 23 6 -1.4822 -6.9988 -3.5870 24 1 -1.0743 -7.9023 -3.1335 25 6 0.5476 -3.2780 -2.4651 26 6 0.2394 -2.3326 -1.2917 27 1 -0.4851 0.8401 0.0004 28 1 1.0204 -4.0786 0.8029 29 1 2.7103 -3.5149 0.7877 30 1 2.2564 -5.6121 -0.6075 31 1 3.0204 -4.2676 -1.4951 32 1 -0.7369 -4.6800 -6.0328 33 1 -1.1548 -6.2818 -6.6797 34 1 -2.8285 -4.6025 -4.7618 35 1 -3.1934 -4.9518 -6.4702 36 1 -4.4935 -6.5280 -5.2011 37 1 -3.0961 -7.4491 -5.8116 38 1 -3.4122 -7.9366 -3.4487 39 1 -3.4100 -6.2005 -3.0676 40 1 1.3421 -2.8553 -3.0800 41 1 -0.3493 -3.4194 -3.0683 42 1 -0.6643 -2.6634 -0.7798 43 1 0.0978 -1.3183 -1.6650 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252631492.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:13:46 Heat of formation + Delta-G solvation = -13.151593 kcal Electronic energy + Delta-G solvation = -22549.168492 eV Core-core repulsion = 19401.387039 eV Total energy + Delta-G solvation = -3147.781454 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.64952 -39.86316 -38.31459 -35.61496 -34.15794 -33.16843 -31.88058 -31.70727 -28.91534 -26.68331 -25.30121 -24.51288 -23.44798 -23.20169 -21.61397 -20.13606 -19.47110 -18.78138 -17.85227 -17.30258 -16.65821 -16.24296 -16.14635 -15.52105 -15.30114 -15.15045 -14.97571 -14.85210 -14.77335 -14.43852 -13.95618 -13.38495 -13.25587 -13.22394 -13.06122 -12.71799 -12.64525 -12.51554 -12.27376 -12.07334 -12.00049 -11.94225 -11.70220 -11.66380 -11.16724 -10.85014 -10.78267 -10.60491 -10.55719 -9.85264 -8.68191 -7.90241 -5.38636 1.45506 1.49773 1.51088 1.58151 1.99740 2.50785 2.77163 3.24432 3.41513 3.55888 3.70471 3.80103 3.92254 4.03877 4.18413 4.20438 4.25145 4.30814 4.39972 4.42446 4.54015 4.62854 4.64334 4.71569 4.73934 4.77754 4.85184 4.98895 5.04107 5.07121 5.11329 5.19642 5.27806 5.34173 5.39545 5.45795 5.50703 5.56615 5.58694 5.63868 6.33689 6.46854 7.08919 7.14863 7.76147 8.30372 9.15141 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.024263 B = 0.004488 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.733852 B = 6237.368140 C = 6893.425962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.043 4.043 3 Si 0.970 3.030 4 H -0.275 1.275 5 H -0.293 1.293 6 H -0.278 1.278 7 C -0.271 4.271 8 H 0.069 0.931 9 N -0.608 5.608 10 C 0.133 3.867 11 C 0.105 3.895 12 N -0.599 5.599 13 C 0.535 3.465 14 O -0.593 6.593 15 C -0.201 4.201 16 H 0.131 0.869 17 C -0.094 4.094 18 H 0.092 0.908 19 C -0.087 4.087 20 C -0.126 4.126 21 C -0.114 4.114 22 C -0.090 4.090 23 C -0.108 4.108 24 H 0.096 0.904 25 C 0.099 3.901 26 C 0.163 3.837 27 H 0.253 0.747 28 H 0.006 0.994 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.055 0.945 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.061 0.939 40 H 0.069 0.931 41 H 0.103 0.897 42 H -0.002 1.002 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.170 -10.539 -13.400 17.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.239 4.239 3 Si 0.798 3.202 4 H -0.201 1.201 5 H -0.219 1.219 6 H -0.204 1.204 7 C -0.400 4.400 8 H 0.087 0.913 9 N -0.332 5.332 10 C 0.006 3.994 11 C -0.020 4.020 12 N -0.330 5.330 13 C 0.326 3.674 14 O -0.475 6.475 15 C -0.221 4.221 16 H 0.149 0.851 17 C -0.112 4.112 18 H 0.111 0.889 19 C -0.124 4.124 20 C -0.163 4.163 21 C -0.152 4.152 22 C -0.127 4.127 23 C -0.127 4.127 24 H 0.114 0.886 25 C -0.025 4.025 26 C 0.037 3.963 27 H 0.062 0.938 28 H 0.024 0.976 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.106 0.894 34 H 0.074 0.926 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.121 0.879 42 H 0.016 0.984 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.060 -10.917 -13.126 17.806 hybrid contribution 0.535 1.082 0.836 1.468 sum -4.524 -9.835 -12.290 16.378 Atomic orbital electron populations 1.70157 1.06679 1.26260 1.54736 1.25786 0.95998 1.01456 1.00638 0.85316 0.77573 0.78994 0.78366 1.20104 1.21910 1.20423 1.19500 0.93201 0.85760 1.41559 0.91334 1.44246 1.36904 1.02051 1.49958 1.21347 0.98034 0.86306 0.93702 1.22024 0.88381 1.00315 0.91245 1.48074 1.32711 1.07261 1.44930 1.20288 0.83268 0.82630 0.81251 1.90590 1.68215 1.30825 1.57871 1.22467 0.99538 1.01208 0.98920 0.85117 1.21959 1.00227 1.00174 0.88887 0.88930 1.20950 0.95680 1.00815 0.94941 1.21677 0.94918 0.97666 1.02071 1.21240 1.00632 0.97836 0.95452 1.20764 0.90830 1.02605 0.98516 1.22392 0.95572 0.93352 1.01363 0.88573 1.22548 1.00734 0.82498 0.96687 1.21110 0.87986 0.98423 0.88806 0.93790 0.97562 0.90786 0.89788 0.91069 0.90791 0.89404 0.92591 0.90001 0.90465 0.90979 0.90507 0.92012 0.91285 0.87851 0.98404 0.90473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.30 11.20 21.65 0.24 -53.06 16 2 C -0.04 -2.31 4.90 84.86 0.42 -1.90 16 3 Si 0.97 43.32 29.59 68.60 2.03 45.35 16 4 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 5 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 6 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 7 C -0.27 -14.53 9.58 84.03 0.80 -13.72 16 8 H 0.07 3.58 7.89 -2.91 -0.02 3.56 16 9 N -0.61 -30.31 2.97 -697.34 -2.07 -32.38 16 10 C 0.13 5.74 6.67 86.41 0.58 6.32 16 11 C 0.10 3.96 6.59 86.41 0.57 4.53 16 12 N -0.60 -22.23 2.94 -817.16 -2.40 -24.64 16 13 C 0.54 19.30 7.48 87.66 0.66 19.96 16 14 O -0.59 -24.75 15.67 -3.03 -0.05 -24.80 16 15 C -0.20 -5.53 4.22 -11.55 -0.05 -5.58 16 16 H 0.13 3.43 5.73 -2.39 -0.01 3.42 16 17 C -0.09 -2.07 5.71 -11.56 -0.07 -2.13 16 18 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 19 C -0.09 -1.40 5.93 30.25 0.18 -1.22 16 20 C -0.13 -1.87 5.70 30.65 0.17 -1.70 16 21 C -0.11 -1.63 5.89 30.06 0.18 -1.45 16 22 C -0.09 -1.66 5.67 29.87 0.17 -1.49 16 23 C -0.11 -2.58 5.77 -10.91 -0.06 -2.64 16 24 H 0.10 2.66 7.67 -2.38 -0.02 2.64 16 25 C 0.10 3.55 6.54 86.56 0.57 4.12 16 26 C 0.16 7.57 5.53 86.56 0.48 8.05 16 27 H 0.25 13.98 8.31 -92.70 -0.77 13.21 16 28 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 29 H 0.07 3.03 7.94 -2.38 -0.02 3.01 16 30 H 0.08 3.14 6.99 -2.39 -0.02 3.13 16 31 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 32 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.06 0.96 7.10 -2.38 -0.02 0.94 16 35 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.07 0.94 8.05 -2.39 -0.02 0.92 16 38 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.06 1.22 8.06 -2.39 -0.02 1.20 16 40 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 41 H 0.10 3.07 5.51 -2.39 -0.01 3.06 16 42 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 43 H 0.08 3.94 5.98 -2.38 -0.01 3.93 16 Total: -1.00 -65.05 330.51 3.33 -61.73 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: 0.98 Total: 16.65 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: 4.59 Total: 11.14 kcal Atomic # 7 Polarization: -105.84 SS G_CDS: -4.23 Total: -110.07 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -0.05 Total: -24.80 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -65.05 3.33 -61.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252631492.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.577 kcal (2) G-P(sol) polarization free energy of solvation -65.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds