Wall clock time and date at job start Tue Mar 31 2020 00:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86809 * 119.99701 * 2 1 4 4 H 1.48504 * 109.46931 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46750 * 299.99495 * 3 2 1 6 6 H 1.48498 * 109.47076 * 59.99575 * 3 2 1 7 7 C 1.38804 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99994 * 162.55095 * 7 2 1 9 9 N 1.36933 * 120.00274 * 342.82344 * 7 2 1 10 10 C 1.46964 * 120.59941 * 151.29483 * 9 7 2 11 11 C 1.53807 * 108.39953 * 124.75704 * 10 9 7 12 12 N 1.46965 * 108.57986 * 49.64157 * 11 10 9 13 13 C 1.34773 * 120.59583 * 124.66481 * 12 11 10 14 14 O 1.21281 * 119.99821 * 179.97438 * 13 12 11 15 15 C 1.50697 * 119.99950 * 359.97438 * 13 12 11 16 16 C 1.53003 * 109.47056 * 179.97438 * 15 13 12 17 17 H 1.09002 * 109.35963 * 305.27729 * 16 15 13 18 18 C 1.50069 * 109.35689 * 65.00002 * 16 15 13 19 19 C 1.29445 * 124.07359 * 137.35738 * 18 16 15 20 20 C 1.50063 * 124.07575 * 359.51587 * 19 18 16 21 21 C 1.53022 * 110.15049 * 17.12154 * 20 19 18 22 22 C 1.53026 * 109.35813 * 185.68872 * 16 15 13 23 23 C 1.46969 * 118.80923 * 304.64744 * 12 11 10 24 24 C 1.46971 * 120.58954 * 331.57456 * 9 7 2 25 25 H 0.97004 * 120.00510 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.60931 * 244.54512 * 10 9 7 27 27 H 1.09004 * 109.60392 * 5.05580 * 10 9 7 28 28 H 1.09002 * 109.74746 * 289.85471 * 11 10 9 29 29 H 1.09000 * 109.67655 * 169.39066 * 11 10 9 30 30 H 1.09002 * 109.47320 * 299.99758 * 15 13 12 31 31 H 1.08997 * 109.47321 * 60.00083 * 15 13 12 32 32 H 1.08002 * 117.96349 * 317.33576 * 18 16 15 33 33 H 1.07997 * 117.95935 * 179.48045 * 19 18 16 34 34 H 1.09000 * 109.36188 * 137.33414 * 20 19 18 35 35 H 1.09010 * 109.35469 * 256.91484 * 20 19 18 36 36 H 1.09002 * 109.64060 * 70.25371 * 21 20 19 37 37 H 1.08996 * 109.64143 * 190.88068 * 21 20 19 38 38 H 1.09003 * 109.63966 * 310.04370 * 22 16 15 39 39 H 1.08997 * 109.64360 * 70.67019 * 22 16 15 40 40 H 1.09001 * 109.60759 * 295.47709 * 23 12 11 41 41 H 1.08998 * 109.74755 * 175.05508 * 23 12 11 42 42 H 1.08993 * 109.60915 * 354.94812 * 24 9 7 43 43 H 1.09004 * 109.60752 * 115.28520 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3964 -1.2126 6 1 1.8912 2.3966 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0530 -1.2236 -0.2799 9 7 1.3715 -2.3614 0.3513 10 6 1.8066 -3.6519 -0.2012 11 6 2.1104 -4.6031 0.9687 12 7 0.9734 -4.5785 1.8996 13 6 0.3446 -5.7195 2.2447 14 8 -0.5922 -5.6867 3.0142 15 6 0.8056 -7.0360 1.6745 16 6 -0.0698 -8.1642 2.2238 17 1 -0.0617 -8.1302 3.3132 18 6 -1.4762 -7.9873 1.7310 19 6 -2.2207 -8.9546 1.3000 20 6 -1.7780 -10.3863 1.2231 21 6 -0.5378 -10.6020 2.0932 22 6 0.4867 -9.5112 1.7571 23 6 0.5346 -3.2873 2.4477 24 6 0.2345 -2.3367 1.2822 25 1 -0.4851 0.8400 -0.0004 26 1 1.0135 -4.0708 -0.8204 27 1 2.7054 -3.5085 -0.8010 28 1 3.0128 -4.2756 1.4848 29 1 2.2521 -5.6157 0.5910 30 1 0.7252 -7.0095 0.5878 31 1 1.8435 -7.2112 1.9579 32 1 -1.8933 -6.9911 1.7366 33 1 -3.2231 -8.7164 0.9761 34 1 -2.5824 -11.0327 1.5741 35 1 -1.5416 -10.6364 0.1887 36 1 -0.8125 -10.5345 3.1458 37 1 -0.1103 -11.5829 1.8851 38 1 0.6543 -9.4850 0.6803 39 1 1.4247 -9.7183 2.2721 40 1 1.3249 -2.8662 3.0691 41 1 -0.3654 -3.4280 3.0461 42 1 0.0947 -1.3247 1.6622 43 1 -0.6687 -2.6613 0.7653 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275140924.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:33 Heat of formation + Delta-G solvation = -7.311612 kcal Electronic energy + Delta-G solvation = -22215.673781 eV Core-core repulsion = 19068.145568 eV Total energy + Delta-G solvation = -3147.528213 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.94050 -38.33956 -36.69108 -33.89043 -32.71093 -31.18735 -31.00439 -30.33004 -27.67225 -26.41495 -23.69260 -22.98761 -22.35435 -21.96625 -20.31349 -18.47931 -17.94103 -17.10759 -16.25860 -15.84747 -15.43925 -15.05706 -14.78835 -14.27111 -13.86679 -13.70309 -13.59192 -13.28103 -13.23859 -12.85857 -12.72280 -12.36679 -12.17873 -12.10474 -11.71298 -11.46350 -11.24521 -10.94454 -10.82545 -10.71940 -10.57683 -10.52546 -10.24606 -10.11759 -9.96870 -9.83150 -9.23478 -8.90607 -8.60130 -8.20797 -6.72172 -5.85884 -3.31494 2.41798 3.04047 3.33107 3.40960 3.42839 3.49903 4.42921 4.60694 4.67392 4.71972 4.94198 5.13533 5.18491 5.27578 5.31581 5.38875 5.42675 5.52295 5.61988 5.65151 5.70351 5.75275 5.78610 5.81637 5.84563 5.89349 6.01472 6.15515 6.28029 6.33909 6.35284 6.38920 6.50842 6.69339 6.80685 6.88336 7.06514 7.26539 7.54503 7.71582 7.95797 8.35133 8.62348 9.10915 9.73737 10.30583 11.21399 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.041178 B = 0.003597 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.808873 B = 7783.304474 C = 7925.770841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.004 3.996 3 Si 0.904 3.096 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.288 1.288 7 C -0.258 4.258 8 H 0.068 0.932 9 N -0.591 5.591 10 C 0.130 3.870 11 C 0.089 3.911 12 N -0.598 5.598 13 C 0.507 3.493 14 O -0.554 6.554 15 C -0.132 4.132 16 C -0.042 4.042 17 H 0.086 0.914 18 C -0.128 4.128 19 C -0.177 4.177 20 C -0.088 4.088 21 C -0.119 4.119 22 C -0.116 4.116 23 C 0.087 3.913 24 C 0.159 3.841 25 H 0.255 0.745 26 H 0.023 0.977 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.112 0.888 33 H 0.099 0.901 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.058 0.942 41 H 0.080 0.920 42 H 0.099 0.901 43 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.740 -18.205 2.646 18.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.195 4.195 3 Si 0.733 3.267 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.215 1.215 7 C -0.387 4.387 8 H 0.086 0.914 9 N -0.314 5.314 10 C 0.003 3.997 11 C -0.036 4.036 12 N -0.331 5.331 13 C 0.296 3.704 14 O -0.434 6.434 15 C -0.171 4.171 16 C -0.061 4.061 17 H 0.104 0.896 18 C -0.146 4.146 19 C -0.195 4.195 20 C -0.125 4.125 21 C -0.157 4.157 22 C -0.154 4.154 23 C -0.036 4.036 24 C 0.032 3.968 25 H 0.065 0.935 26 H 0.041 0.959 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.130 0.870 33 H 0.117 0.883 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.076 0.924 41 H 0.098 0.902 42 H 0.117 0.883 43 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 1.150 -18.001 3.028 18.290 hybrid contribution 0.363 1.076 -0.151 1.145 sum 1.513 -16.926 2.877 17.235 Atomic orbital electron populations 1.70030 1.05344 1.25653 1.53383 1.25093 0.95288 0.98604 1.00550 0.86208 0.79350 0.83754 0.77340 1.20185 1.21671 1.21458 1.19230 0.92738 0.84667 1.42080 0.91424 1.44022 1.36564 1.01606 1.49240 1.21364 0.98377 0.87454 0.92503 1.22455 0.88446 1.00300 0.92425 1.48104 1.32618 1.07017 1.45322 1.20585 0.82823 0.85535 0.81500 1.90637 1.28930 1.86991 1.36816 1.21707 1.00782 0.92464 1.02197 1.19837 0.92414 0.92958 1.00889 0.89589 1.22228 0.95263 0.99575 0.97537 1.21980 0.99746 0.94657 1.03104 1.20413 0.97464 0.94632 0.99975 1.21584 0.95716 0.98264 1.00118 1.21678 0.98142 0.94085 1.01462 1.22466 0.99761 0.83024 0.98399 1.21178 0.88975 0.98597 0.88020 0.93492 0.95897 0.91516 0.91654 0.90889 0.88967 0.89088 0.86994 0.88291 0.91600 0.91314 0.91784 0.91870 0.91568 0.91671 0.92354 0.90202 0.88340 0.95947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.77 11.20 55.49 0.62 -25.15 16 2 C 0.00 0.10 4.91 -17.44 -0.09 0.01 16 3 Si 0.90 21.20 29.59 -169.99 -5.03 16.17 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 7 C -0.26 -6.85 9.57 -15.06 -0.14 -6.99 16 8 H 0.07 1.75 7.89 -52.48 -0.41 1.34 16 9 N -0.59 -14.41 2.96 -171.77 -0.51 -14.92 16 10 C 0.13 2.56 6.70 -3.37 -0.02 2.54 16 11 C 0.09 1.42 6.52 -3.37 -0.02 1.39 16 12 N -0.60 -10.79 2.95 -172.22 -0.51 -11.30 16 13 C 0.51 8.66 7.33 -10.99 -0.08 8.58 16 14 O -0.55 -11.08 13.70 5.56 0.08 -11.00 16 15 C -0.13 -1.65 3.47 -27.88 -0.10 -1.74 16 16 C -0.04 -0.52 2.11 -92.06 -0.19 -0.71 16 17 H 0.09 1.15 7.94 -51.93 -0.41 0.74 16 18 C -0.13 -1.75 8.42 -35.90 -0.30 -2.05 16 19 C -0.18 -2.10 9.80 -35.90 -0.35 -2.45 16 20 C -0.09 -0.83 6.12 -28.18 -0.17 -1.00 16 21 C -0.12 -1.06 6.01 -26.52 -0.16 -1.22 16 22 C -0.12 -1.09 5.30 -26.52 -0.14 -1.23 16 23 C 0.09 1.77 6.59 -3.60 -0.02 1.74 16 24 C 0.16 3.80 5.51 -3.60 -0.02 3.78 16 25 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.07 1.23 7.93 -51.93 -0.41 0.82 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.07 0.90 5.91 -51.93 -0.31 0.60 16 30 H 0.09 1.09 7.72 -51.93 -0.40 0.69 16 31 H 0.09 0.94 7.91 -51.93 -0.41 0.53 16 32 H 0.11 1.84 6.53 -52.49 -0.34 1.49 16 33 H 0.10 1.13 8.06 -52.49 -0.42 0.70 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.60 8.14 -51.92 -0.42 0.17 16 36 H 0.06 0.60 8.12 -51.93 -0.42 0.17 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 41 H 0.08 1.64 7.00 -51.93 -0.36 1.27 16 42 H 0.10 2.61 6.00 -51.93 -0.31 2.29 16 43 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 332.65 15.07 5.01 5.01 Total: -1.00 -30.48 332.65 -9.31 -39.78 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -7.16 Total: 0.76 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -1.82 Total: 0.65 kcal Atomic # 7 Polarization: -50.98 SS G_CDS: -0.39 Total: -51.37 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.08 Total: -11.00 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.48 -9.31 -39.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275140924.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.473 kcal (2) G-P(sol) polarization free energy of solvation -30.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds