Wall clock time and date at job start Tue Mar 31 2020 00:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86809 * 119.99701 * 2 1 4 4 H 1.48504 * 109.46931 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46750 * 299.99495 * 3 2 1 6 6 H 1.48498 * 109.47076 * 59.99575 * 3 2 1 7 7 C 1.38804 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99994 * 162.55095 * 7 2 1 9 9 N 1.36933 * 120.00274 * 342.82344 * 7 2 1 10 10 C 1.46964 * 120.59941 * 151.29483 * 9 7 2 11 11 C 1.53807 * 108.39953 * 124.75704 * 10 9 7 12 12 N 1.46965 * 108.57986 * 49.64157 * 11 10 9 13 13 C 1.34773 * 120.59583 * 124.66481 * 12 11 10 14 14 O 1.21281 * 119.99821 * 179.97438 * 13 12 11 15 15 C 1.50697 * 119.99950 * 359.97438 * 13 12 11 16 16 C 1.53003 * 109.47056 * 179.97438 * 15 13 12 17 17 H 1.09002 * 109.35963 * 305.27729 * 16 15 13 18 18 C 1.50069 * 109.35689 * 65.00002 * 16 15 13 19 19 C 1.29445 * 124.07359 * 137.35738 * 18 16 15 20 20 C 1.50063 * 124.07575 * 359.51587 * 19 18 16 21 21 C 1.53022 * 110.15049 * 17.12154 * 20 19 18 22 22 C 1.53026 * 109.35813 * 185.68872 * 16 15 13 23 23 C 1.46969 * 118.80923 * 304.64744 * 12 11 10 24 24 C 1.46971 * 120.58954 * 331.57456 * 9 7 2 25 25 H 0.97004 * 120.00510 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.60931 * 244.54512 * 10 9 7 27 27 H 1.09004 * 109.60392 * 5.05580 * 10 9 7 28 28 H 1.09002 * 109.74746 * 289.85471 * 11 10 9 29 29 H 1.09000 * 109.67655 * 169.39066 * 11 10 9 30 30 H 1.09002 * 109.47320 * 299.99758 * 15 13 12 31 31 H 1.08997 * 109.47321 * 60.00083 * 15 13 12 32 32 H 1.08002 * 117.96349 * 317.33576 * 18 16 15 33 33 H 1.07997 * 117.95935 * 179.48045 * 19 18 16 34 34 H 1.09000 * 109.36188 * 137.33414 * 20 19 18 35 35 H 1.09010 * 109.35469 * 256.91484 * 20 19 18 36 36 H 1.09002 * 109.64060 * 70.25371 * 21 20 19 37 37 H 1.08996 * 109.64143 * 190.88068 * 21 20 19 38 38 H 1.09003 * 109.63966 * 310.04370 * 22 16 15 39 39 H 1.08997 * 109.64360 * 70.67019 * 22 16 15 40 40 H 1.09001 * 109.60759 * 295.47709 * 23 12 11 41 41 H 1.08998 * 109.74755 * 175.05508 * 23 12 11 42 42 H 1.08993 * 109.60915 * 354.94812 * 24 9 7 43 43 H 1.09004 * 109.60752 * 115.28520 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3964 -1.2126 6 1 1.8912 2.3966 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0530 -1.2236 -0.2799 9 7 1.3715 -2.3614 0.3513 10 6 1.8066 -3.6519 -0.2012 11 6 2.1104 -4.6031 0.9687 12 7 0.9734 -4.5785 1.8996 13 6 0.3446 -5.7195 2.2447 14 8 -0.5922 -5.6867 3.0142 15 6 0.8056 -7.0360 1.6745 16 6 -0.0698 -8.1642 2.2238 17 1 -0.0617 -8.1302 3.3132 18 6 -1.4762 -7.9873 1.7310 19 6 -2.2207 -8.9546 1.3000 20 6 -1.7780 -10.3863 1.2231 21 6 -0.5378 -10.6020 2.0932 22 6 0.4867 -9.5112 1.7571 23 6 0.5346 -3.2873 2.4477 24 6 0.2345 -2.3367 1.2822 25 1 -0.4851 0.8400 -0.0004 26 1 1.0135 -4.0708 -0.8204 27 1 2.7054 -3.5085 -0.8010 28 1 3.0128 -4.2756 1.4848 29 1 2.2521 -5.6157 0.5910 30 1 0.7252 -7.0095 0.5878 31 1 1.8435 -7.2112 1.9579 32 1 -1.8933 -6.9911 1.7366 33 1 -3.2231 -8.7164 0.9761 34 1 -2.5824 -11.0327 1.5741 35 1 -1.5416 -10.6364 0.1887 36 1 -0.8125 -10.5345 3.1458 37 1 -0.1103 -11.5829 1.8851 38 1 0.6543 -9.4850 0.6803 39 1 1.4247 -9.7183 2.2721 40 1 1.3249 -2.8662 3.0691 41 1 -0.3654 -3.4280 3.0461 42 1 0.0947 -1.3247 1.6622 43 1 -0.6687 -2.6613 0.7653 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275140924.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:33 Heat of formation + Delta-G solvation = -24.399999 kcal Electronic energy + Delta-G solvation = -22216.414789 eV Core-core repulsion = 19068.145568 eV Total energy + Delta-G solvation = -3148.269221 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.24751 -39.40152 -38.24852 -35.62858 -33.74403 -33.04338 -31.94804 -31.82162 -29.07023 -27.83133 -25.43429 -24.49437 -23.30676 -22.98443 -21.87931 -20.00644 -18.85107 -18.66760 -17.78871 -16.96133 -16.81920 -16.64565 -16.33944 -15.50158 -15.37077 -15.06480 -15.01282 -14.83653 -14.65424 -13.87437 -13.69512 -13.50061 -13.38547 -13.25048 -13.13783 -12.91122 -12.66700 -12.51179 -12.33232 -12.24580 -12.02743 -11.89077 -11.67591 -11.61880 -11.35438 -11.00428 -10.64842 -10.56536 -9.85844 -9.78503 -8.67257 -7.89740 -5.39055 1.43057 1.46383 1.48954 1.59229 1.70755 2.11114 2.50268 3.25249 3.57039 3.59561 3.82964 3.85915 4.03775 4.24438 4.25503 4.31405 4.39035 4.44043 4.51335 4.51620 4.56681 4.66781 4.72742 4.79058 4.81462 4.84658 4.91054 4.97415 5.05551 5.11086 5.13522 5.24474 5.26389 5.44861 5.46237 5.54003 5.60105 5.68133 5.82740 6.11829 6.33832 6.58138 7.07688 7.25704 7.77684 8.31197 9.15536 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.041178 B = 0.003597 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.808873 B = 7783.304474 C = 7925.770841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.053 4.053 3 Si 0.970 3.030 4 H -0.261 1.261 5 H -0.294 1.294 6 H -0.293 1.293 7 C -0.262 4.262 8 H 0.077 0.923 9 N -0.610 5.610 10 C 0.124 3.876 11 C 0.099 3.901 12 N -0.606 5.606 13 C 0.502 3.498 14 O -0.590 6.590 15 C -0.123 4.123 16 C -0.039 4.039 17 H 0.068 0.932 18 C -0.155 4.155 19 C -0.165 4.165 20 C -0.088 4.088 21 C -0.120 4.120 22 C -0.110 4.110 23 C 0.102 3.898 24 C 0.171 3.829 25 H 0.250 0.750 26 H 0.014 0.986 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.121 0.879 30 H 0.106 0.894 31 H 0.126 0.874 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.055 0.945 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.067 0.933 43 H -0.012 1.012 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.241 -20.954 2.209 21.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.248 4.248 3 Si 0.798 3.202 4 H -0.185 1.185 5 H -0.221 1.221 6 H -0.220 1.220 7 C -0.392 4.392 8 H 0.095 0.905 9 N -0.333 5.333 10 C -0.002 4.002 11 C -0.025 4.025 12 N -0.338 5.338 13 C 0.292 3.708 14 O -0.471 6.471 15 C -0.162 4.162 16 C -0.057 4.057 17 H 0.086 0.914 18 C -0.174 4.174 19 C -0.183 4.183 20 C -0.125 4.125 21 C -0.157 4.157 22 C -0.147 4.147 23 C -0.022 4.022 24 C 0.044 3.956 25 H 0.059 0.941 26 H 0.032 0.968 27 H 0.100 0.900 28 H 0.094 0.906 29 H 0.139 0.861 30 H 0.125 0.875 31 H 0.144 0.856 32 H 0.090 0.910 33 H 0.113 0.887 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.074 0.926 37 H 0.105 0.895 38 H 0.094 0.906 39 H 0.103 0.897 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.006 0.994 Dipole moment (debyes) X Y Z Total from point charges 3.688 -20.796 2.580 21.277 hybrid contribution -0.512 1.871 -0.049 1.941 sum 3.176 -18.925 2.531 19.356 Atomic orbital electron populations 1.70195 1.06967 1.25928 1.55330 1.25888 0.95963 1.01870 1.01080 0.85171 0.78856 0.79599 0.76572 1.18500 1.22141 1.21959 1.19627 0.93245 0.85622 1.40697 0.90497 1.44284 1.36279 1.02962 1.49796 1.21602 0.98459 0.86019 0.94159 1.22481 0.87669 1.01856 0.90454 1.48216 1.33449 1.06270 1.45875 1.21508 0.81860 0.86655 0.80730 1.90626 1.30437 1.87588 1.38473 1.21785 1.02504 0.89288 1.02610 1.19816 0.91438 0.94683 0.99776 0.91367 1.22126 0.96940 0.98187 1.00105 1.22241 0.99213 0.96033 1.00850 1.20495 0.98351 0.92524 1.01145 1.21617 0.95305 0.99326 0.99460 1.21672 0.98858 0.92023 1.02182 1.22022 0.99655 0.83930 0.96631 1.20844 0.88087 0.97699 0.88926 0.94109 0.96813 0.90029 0.90626 0.86127 0.87534 0.85598 0.90962 0.88668 0.90389 0.89829 0.92608 0.89483 0.90588 0.89694 0.91829 0.91142 0.91470 0.99372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.81 11.20 21.65 0.24 -55.56 16 2 C -0.05 -2.91 4.91 84.86 0.42 -2.49 16 3 Si 0.97 44.13 29.59 68.60 2.03 46.16 16 4 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 5 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 6 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 7 C -0.26 -13.93 9.57 84.03 0.80 -13.13 16 8 H 0.08 3.88 7.89 -2.91 -0.02 3.86 16 9 N -0.61 -29.95 2.96 -697.36 -2.06 -32.02 16 10 C 0.12 4.68 6.70 86.56 0.58 5.26 16 11 C 0.10 2.87 6.52 86.56 0.56 3.43 16 12 N -0.61 -21.26 2.95 -817.17 -2.41 -23.67 16 13 C 0.50 16.72 7.33 87.66 0.64 17.36 16 14 O -0.59 -24.19 13.70 -3.03 -0.04 -24.23 16 15 C -0.12 -2.71 3.47 29.85 0.10 -2.60 16 16 C -0.04 -0.86 2.11 -11.73 -0.02 -0.89 16 17 H 0.07 1.76 7.94 -2.39 -0.02 1.75 16 18 C -0.16 -4.23 8.42 27.04 0.23 -4.01 16 19 C -0.17 -3.77 9.80 27.03 0.27 -3.51 16 20 C -0.09 -1.41 6.12 29.66 0.18 -1.23 16 21 C -0.12 -1.71 6.01 30.73 0.18 -1.52 16 22 C -0.11 -1.64 5.30 30.73 0.16 -1.48 16 23 C 0.10 4.26 6.59 86.41 0.57 4.83 16 24 C 0.17 8.58 5.51 86.41 0.48 9.06 16 25 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 26 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.08 2.82 7.93 -2.39 -0.02 2.80 16 28 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.12 2.38 5.91 -2.39 -0.01 2.36 16 30 H 0.11 2.12 7.72 -2.39 -0.02 2.10 16 31 H 0.13 1.95 7.91 -2.39 -0.02 1.94 16 32 H 0.07 2.52 6.53 -2.91 -0.02 2.50 16 33 H 0.10 2.16 8.06 -2.91 -0.02 2.14 16 34 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 36 H 0.06 0.90 8.12 -2.39 -0.02 0.88 16 37 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.08 1.03 8.10 -2.39 -0.02 1.01 16 39 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 41 H 0.07 3.03 7.00 -2.39 -0.02 3.02 16 42 H 0.07 3.77 6.00 -2.39 -0.01 3.75 16 43 H -0.01 -0.66 8.14 -2.38 -0.02 -0.68 16 Total: -1.00 -69.76 332.65 3.88 -65.88 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: 0.97 Total: 14.37 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: 5.15 Total: 9.07 kcal Atomic # 7 Polarization: -107.02 SS G_CDS: -4.23 Total: -111.25 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -0.04 Total: -24.23 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -69.76 3.88 -65.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275140924.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.480 kcal (2) G-P(sol) polarization free energy of solvation -69.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds