Wall clock time and date at job start Tue Mar 31 2020 00:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 120.00397 * 2 1 4 4 H 1.48499 * 109.46903 * 269.99894 * 3 2 1 5 5 H 1.48498 * 109.46758 * 29.99670 * 3 2 1 6 6 H 1.48497 * 109.47378 * 149.99598 * 3 2 1 7 7 C 1.37883 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00026 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99791 * 0.02562 * 7 2 1 10 10 C 1.53044 * 109.45752 * 180.02562 * 9 7 2 11 11 C 1.53197 * 109.31108 * 181.38454 * 10 9 7 12 12 N 1.46924 * 108.77511 * 305.36573 * 11 10 9 13 13 C 1.34780 * 120.62536 * 233.61010 * 12 11 10 14 14 O 1.21591 * 119.99789 * 174.77288 * 13 12 11 15 15 N 1.34772 * 120.00296 * 354.76991 * 13 12 11 16 16 C 1.46503 * 120.00107 * 184.98019 * 15 13 12 17 17 H 1.09007 * 109.35258 * 34.99928 * 16 15 13 18 18 C 1.50059 * 109.35847 * 275.27705 * 16 15 13 19 19 C 1.29439 * 124.07557 * 222.63870 * 18 16 15 20 20 C 1.50070 * 124.07696 * 0.48954 * 19 18 16 21 21 C 1.53022 * 110.14515 * 342.87223 * 20 19 18 22 22 C 1.53030 * 109.35721 * 154.71900 * 16 15 13 23 23 C 1.46926 * 118.73988 * 53.60847 * 12 11 10 24 24 C 1.53044 * 109.46198 * 300.06452 * 9 7 2 25 25 H 0.96997 * 119.99988 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.45009 * 60.03361 * 9 7 2 27 27 H 1.09002 * 109.49512 * 301.33196 * 10 9 7 28 28 H 1.08999 * 109.49733 * 61.43101 * 10 9 7 29 29 H 1.08996 * 109.58207 * 65.14973 * 11 10 9 30 30 H 1.08998 * 109.58408 * 185.57342 * 11 10 9 31 31 H 0.96995 * 119.99825 * 4.97675 * 15 13 12 32 32 H 1.08002 * 117.96335 * 42.65919 * 18 16 15 33 33 H 1.07997 * 117.96285 * 180.47030 * 19 18 16 34 34 H 1.08996 * 109.35853 * 103.07476 * 20 19 18 35 35 H 1.08999 * 109.36167 * 222.80237 * 20 19 18 36 36 H 1.09000 * 109.64461 * 169.12338 * 21 20 19 37 37 H 1.09005 * 109.64337 * 289.53750 * 21 20 19 38 38 H 1.08997 * 109.64359 * 289.33084 * 22 16 15 39 39 H 1.08995 * 109.63936 * 49.96418 * 22 16 15 40 40 H 1.08999 * 109.58526 * 186.60795 * 23 12 11 41 41 H 1.08987 * 109.58558 * 66.17883 * 23 12 11 42 42 H 1.09000 * 109.49724 * 298.57394 * 24 9 7 43 43 H 1.09001 * 109.49266 * 58.66305 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2457 -3.6622 0.0018 11 6 1.4766 -4.9867 -0.0331 12 7 0.5213 -5.0084 1.0830 13 6 0.5101 -6.0341 1.9573 14 8 -0.2187 -5.9960 2.9298 15 7 1.3067 -7.1020 1.7536 16 6 1.2161 -8.2634 2.6419 17 1 0.1799 -8.4023 2.9504 18 6 2.0690 -8.0301 3.8543 19 6 2.8377 -8.9268 4.3838 20 6 2.9914 -10.3221 3.8530 21 6 1.8368 -10.6559 2.9059 22 6 1.6950 -9.5109 1.8961 23 6 -0.4214 -3.8908 1.2279 24 6 0.3695 -2.5790 1.2491 25 1 -0.4850 0.8400 -0.0004 26 1 0.6252 -2.5569 -0.8901 27 1 2.8889 -3.5918 -0.8754 28 1 2.8549 -3.6189 0.9047 29 1 0.9379 -5.0715 -0.9768 30 1 2.1750 -5.8175 0.0673 31 1 1.9399 -7.1015 1.0188 32 1 2.0394 -7.0532 4.3139 33 1 3.4039 -8.6539 5.2620 34 1 3.9354 -10.4016 3.3139 35 1 2.9895 -11.0272 4.6843 36 1 2.0521 -11.5854 2.3789 37 1 0.9143 -10.7636 3.4765 38 1 0.9650 -9.7853 1.1346 39 1 2.6591 -9.3109 1.4288 40 1 -0.9752 -3.9985 2.1605 41 1 -1.1148 -3.8863 0.3871 42 1 0.9966 -2.5460 2.1399 43 1 -0.3230 -1.7372 1.2598 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335846055.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:47 Heat of formation + Delta-G solvation = -25.004337 kcal Electronic energy + Delta-G solvation = -22108.592403 eV Core-core repulsion = 18960.296976 eV Total energy + Delta-G solvation = -3148.295427 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.16316 -38.50378 -36.72216 -34.12008 -33.41101 -31.20544 -31.08395 -30.28982 -28.86300 -26.06801 -23.51391 -22.80601 -22.52001 -21.98485 -20.10800 -18.95411 -18.12128 -17.59700 -16.51135 -16.32009 -15.71686 -14.93984 -14.64918 -14.48000 -13.93899 -13.73237 -13.44947 -13.13731 -12.96013 -12.78813 -12.72567 -12.67285 -12.32758 -12.15478 -11.81469 -11.36037 -11.09789 -10.93270 -10.84761 -10.63693 -10.52982 -10.41641 -10.04050 -9.73039 -9.54729 -9.16827 -9.15086 -8.93410 -8.87725 -8.35220 -7.86537 -6.00474 -4.07212 2.15037 3.13037 3.29325 3.36665 3.39600 3.58959 4.22639 4.42243 4.53399 4.57181 4.76572 4.99603 5.20446 5.28817 5.29521 5.35947 5.39186 5.45071 5.64649 5.65436 5.76624 5.77948 5.87213 6.01564 6.09298 6.13574 6.29629 6.44120 6.48959 6.53524 6.63902 6.67026 6.84282 6.91418 7.00319 7.18078 7.27407 7.52439 7.72871 7.95243 8.08196 8.35138 8.42066 8.96030 8.99174 9.57761 11.04865 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.035809 B = 0.003536 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.738411 B = 7916.823706 C = 8077.874247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.514 4.514 8 H 0.054 0.946 9 C 0.050 3.950 10 C -0.124 4.124 11 C 0.114 3.886 12 N -0.618 5.618 13 C 0.704 3.296 14 O -0.600 6.600 15 N -0.746 5.746 16 C 0.195 3.805 17 H 0.094 0.906 18 C -0.152 4.152 19 C -0.159 4.159 20 C -0.091 4.091 21 C -0.116 4.116 22 C -0.126 4.126 23 C 0.126 3.874 24 C -0.123 4.123 25 H 0.260 0.740 26 H 0.027 0.973 27 H 0.059 0.941 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.394 0.606 32 H 0.107 0.893 33 H 0.102 0.898 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.056 0.944 42 H 0.037 0.963 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.205 -19.335 2.594 19.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.552 4.552 8 H 0.072 0.928 9 C 0.031 3.969 10 C -0.162 4.162 11 C -0.010 4.010 12 N -0.355 5.355 13 C 0.406 3.594 14 O -0.479 6.479 15 N -0.404 5.404 16 C 0.089 3.911 17 H 0.111 0.889 18 C -0.172 4.172 19 C -0.178 4.178 20 C -0.128 4.128 21 C -0.154 4.154 22 C -0.164 4.164 23 C 0.004 3.996 24 C -0.162 4.162 25 H 0.070 0.930 26 H 0.045 0.955 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.231 0.769 32 H 0.125 0.875 33 H 0.120 0.880 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.074 0.926 42 H 0.056 0.944 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.482 -19.152 3.283 19.741 hybrid contribution 0.922 1.130 -0.281 1.485 sum 4.403 -18.022 3.002 18.793 Atomic orbital electron populations 1.69842 1.05847 1.26470 1.50704 1.24965 0.94860 0.99052 0.95092 0.86621 0.79895 0.83608 0.78022 1.20749 1.21243 1.20014 1.21189 0.92855 0.90634 1.50518 0.92783 1.18618 0.92559 0.91492 0.94189 1.22015 0.98953 0.94389 1.00860 1.21703 0.91135 0.98917 0.89216 1.47457 1.37980 1.21484 1.28540 1.15903 0.80700 0.80022 0.82773 1.90863 1.46008 1.80861 1.30190 1.45369 1.43148 1.16980 1.34864 1.19525 0.99793 0.83904 0.87835 0.88869 1.22565 0.97334 0.99733 0.97518 1.22017 0.99814 0.95414 1.00598 1.20471 0.98783 0.94660 0.98890 1.21561 0.99129 0.97638 0.97107 1.21851 1.01999 0.94262 0.98266 1.21765 0.90883 0.85727 1.01208 1.22018 1.00047 0.94944 0.99176 0.92953 0.95494 0.92194 0.92941 0.91946 0.92313 0.76896 0.87537 0.87992 0.90948 0.91160 0.91260 0.91353 0.90972 0.91156 0.90558 0.92590 0.94385 0.87893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.89 11.30 55.43 0.63 -24.27 16 2 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 3 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.51 -13.76 8.56 -34.44 -0.29 -14.06 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 9 C 0.05 1.19 2.06 -91.73 -0.19 1.00 16 10 C -0.12 -2.41 5.30 -26.61 -0.14 -2.55 16 11 C 0.11 1.83 6.39 -3.71 -0.02 1.81 16 12 N -0.62 -11.42 2.97 -178.51 -0.53 -11.95 16 13 C 0.70 12.91 8.24 -86.92 -0.72 12.19 16 14 O -0.60 -13.03 15.47 5.29 0.08 -12.95 16 15 N -0.75 -10.41 4.96 -60.10 -0.30 -10.70 16 16 C 0.19 2.40 2.67 -69.38 -0.19 2.21 16 17 H 0.09 1.31 7.65 -51.92 -0.40 0.91 16 18 C -0.15 -1.92 9.32 -35.90 -0.33 -2.26 16 19 C -0.16 -1.64 9.80 -35.90 -0.35 -1.99 16 20 C -0.09 -0.72 6.11 -28.18 -0.17 -0.89 16 21 C -0.12 -0.88 6.01 -26.55 -0.16 -1.04 16 22 C -0.13 -1.11 5.47 -26.55 -0.15 -1.25 16 23 C 0.13 2.59 6.44 -3.71 -0.02 2.57 16 24 C -0.12 -2.90 5.15 -26.61 -0.14 -3.03 16 25 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 26 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 28 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.06 0.76 5.65 -51.93 -0.29 0.46 16 31 H 0.39 4.65 6.08 -40.82 -0.25 4.41 16 32 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 33 H 0.10 0.98 8.06 -52.49 -0.42 0.55 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.54 8.13 -51.93 -0.42 0.12 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.58 8.11 -51.93 -0.42 0.16 16 40 H 0.08 1.62 7.00 -51.93 -0.36 1.25 16 41 H 0.06 1.12 8.14 -51.94 -0.42 0.69 16 42 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.10 2.69 6.03 -51.93 -0.31 2.38 16 LS Contribution 334.62 15.07 5.04 5.04 Total: -1.00 -30.24 334.62 -10.14 -40.38 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -7.07 Total: 4.12 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: -2.97 Total: -5.71 kcal Atomic # 7 Polarization: -46.72 SS G_CDS: -0.20 Total: -46.92 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: 0.08 Total: -12.95 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.24 -10.14 -40.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335846055.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.380 kcal (2) G-P(sol) polarization free energy of solvation -30.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds