Wall clock time and date at job start Tue Mar 31 2020 00:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 120.00397 * 2 1 4 4 H 1.48499 * 109.46903 * 269.99894 * 3 2 1 5 5 H 1.48498 * 109.46758 * 29.99670 * 3 2 1 6 6 H 1.48497 * 109.47378 * 149.99598 * 3 2 1 7 7 C 1.37883 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00026 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99791 * 0.02562 * 7 2 1 10 10 C 1.53044 * 109.45752 * 180.02562 * 9 7 2 11 11 C 1.53197 * 109.31108 * 181.38454 * 10 9 7 12 12 N 1.46924 * 108.77511 * 305.36573 * 11 10 9 13 13 C 1.34780 * 120.62536 * 233.61010 * 12 11 10 14 14 O 1.21591 * 119.99789 * 174.77288 * 13 12 11 15 15 N 1.34772 * 120.00296 * 354.76991 * 13 12 11 16 16 C 1.46503 * 120.00107 * 184.98019 * 15 13 12 17 17 H 1.09007 * 109.35258 * 34.99928 * 16 15 13 18 18 C 1.50059 * 109.35847 * 275.27705 * 16 15 13 19 19 C 1.29439 * 124.07557 * 222.63870 * 18 16 15 20 20 C 1.50070 * 124.07696 * 0.48954 * 19 18 16 21 21 C 1.53022 * 110.14515 * 342.87223 * 20 19 18 22 22 C 1.53030 * 109.35721 * 154.71900 * 16 15 13 23 23 C 1.46926 * 118.73988 * 53.60847 * 12 11 10 24 24 C 1.53044 * 109.46198 * 300.06452 * 9 7 2 25 25 H 0.96997 * 119.99988 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.45009 * 60.03361 * 9 7 2 27 27 H 1.09002 * 109.49512 * 301.33196 * 10 9 7 28 28 H 1.08999 * 109.49733 * 61.43101 * 10 9 7 29 29 H 1.08996 * 109.58207 * 65.14973 * 11 10 9 30 30 H 1.08998 * 109.58408 * 185.57342 * 11 10 9 31 31 H 0.96995 * 119.99825 * 4.97675 * 15 13 12 32 32 H 1.08002 * 117.96335 * 42.65919 * 18 16 15 33 33 H 1.07997 * 117.96285 * 180.47030 * 19 18 16 34 34 H 1.08996 * 109.35853 * 103.07476 * 20 19 18 35 35 H 1.08999 * 109.36167 * 222.80237 * 20 19 18 36 36 H 1.09000 * 109.64461 * 169.12338 * 21 20 19 37 37 H 1.09005 * 109.64337 * 289.53750 * 21 20 19 38 38 H 1.08997 * 109.64359 * 289.33084 * 22 16 15 39 39 H 1.08995 * 109.63936 * 49.96418 * 22 16 15 40 40 H 1.08999 * 109.58526 * 186.60795 * 23 12 11 41 41 H 1.08987 * 109.58558 * 66.17883 * 23 12 11 42 42 H 1.09000 * 109.49724 * 298.57394 * 24 9 7 43 43 H 1.09001 * 109.49266 * 58.66305 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2457 -3.6622 0.0018 11 6 1.4766 -4.9867 -0.0331 12 7 0.5213 -5.0084 1.0830 13 6 0.5101 -6.0341 1.9573 14 8 -0.2187 -5.9960 2.9298 15 7 1.3067 -7.1020 1.7536 16 6 1.2161 -8.2634 2.6419 17 1 0.1799 -8.4023 2.9504 18 6 2.0690 -8.0301 3.8543 19 6 2.8377 -8.9268 4.3838 20 6 2.9914 -10.3221 3.8530 21 6 1.8368 -10.6559 2.9059 22 6 1.6950 -9.5109 1.8961 23 6 -0.4214 -3.8908 1.2279 24 6 0.3695 -2.5790 1.2491 25 1 -0.4850 0.8400 -0.0004 26 1 0.6252 -2.5569 -0.8901 27 1 2.8889 -3.5918 -0.8754 28 1 2.8549 -3.6189 0.9047 29 1 0.9379 -5.0715 -0.9768 30 1 2.1750 -5.8175 0.0673 31 1 1.9399 -7.1015 1.0188 32 1 2.0394 -7.0532 4.3139 33 1 3.4039 -8.6539 5.2620 34 1 3.9354 -10.4016 3.3139 35 1 2.9895 -11.0272 4.6843 36 1 2.0521 -11.5854 2.3789 37 1 0.9143 -10.7636 3.4765 38 1 0.9650 -9.7853 1.1346 39 1 2.6591 -9.3109 1.4288 40 1 -0.9752 -3.9985 2.1605 41 1 -1.1148 -3.8863 0.3871 42 1 0.9966 -2.5460 2.1399 43 1 -0.3230 -1.7372 1.2598 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335846055.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:46 Heat of formation + Delta-G solvation = -42.248064 kcal Electronic energy + Delta-G solvation = -22109.340147 eV Core-core repulsion = 18960.296976 eV Total energy + Delta-G solvation = -3149.043172 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.51703 -39.54707 -38.26411 -35.51855 -35.06174 -32.88505 -31.97806 -31.82360 -29.95323 -27.88272 -24.97113 -24.19828 -23.43767 -23.28067 -21.66752 -20.42439 -19.34898 -18.70369 -18.30505 -17.62497 -16.87878 -16.53698 -16.29843 -15.70951 -15.24200 -14.94243 -14.74325 -14.58734 -14.43417 -14.16159 -13.79720 -13.69971 -13.50842 -13.40428 -13.17013 -12.99372 -12.81988 -12.47003 -12.17521 -12.08717 -11.92505 -11.54011 -11.44304 -11.34418 -11.27233 -10.92931 -10.79860 -10.40950 -10.19304 -9.99242 -9.39398 -8.07555 -6.21590 1.21387 1.40744 1.42619 1.51625 1.83094 2.14525 2.43699 2.98044 3.18937 3.75029 3.83076 4.03613 4.11655 4.23113 4.26097 4.33042 4.42961 4.49133 4.53577 4.59776 4.64694 4.71356 4.76268 4.90028 4.94192 4.98185 5.06401 5.15544 5.18838 5.22864 5.33808 5.39385 5.46647 5.49841 5.53599 5.66067 5.71030 5.96942 5.99371 6.09609 6.11996 6.38501 6.89895 7.01862 7.46499 7.57907 8.95848 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.035809 B = 0.003536 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.738411 B = 7916.823706 C = 8077.874247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.013 3.987 3 Si 0.951 3.049 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.271 1.271 7 C -0.533 4.533 8 H 0.052 0.948 9 C 0.046 3.954 10 C -0.116 4.116 11 C 0.118 3.882 12 N -0.622 5.622 13 C 0.700 3.300 14 O -0.640 6.640 15 N -0.727 5.727 16 C 0.194 3.806 17 H 0.069 0.931 18 C -0.186 4.186 19 C -0.134 4.134 20 C -0.092 4.092 21 C -0.115 4.115 22 C -0.118 4.118 23 C 0.138 3.862 24 C -0.111 4.111 25 H 0.260 0.740 26 H 0.006 0.994 27 H 0.075 0.925 28 H 0.041 0.959 29 H 0.078 0.922 30 H 0.100 0.900 31 H 0.408 0.592 32 H 0.070 0.930 33 H 0.107 0.893 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.061 0.939 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.017 0.983 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.144 -21.856 1.720 22.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.186 4.186 3 Si 0.777 3.223 4 H -0.199 1.199 5 H -0.213 1.213 6 H -0.196 1.196 7 C -0.572 4.572 8 H 0.070 0.930 9 C 0.028 3.972 10 C -0.155 4.155 11 C -0.004 4.004 12 N -0.358 5.358 13 C 0.402 3.598 14 O -0.522 6.522 15 N -0.385 5.385 16 C 0.090 3.910 17 H 0.086 0.914 18 C -0.205 4.205 19 C -0.153 4.153 20 C -0.128 4.128 21 C -0.153 4.153 22 C -0.156 4.156 23 C 0.015 3.985 24 C -0.150 4.150 25 H 0.069 0.931 26 H 0.024 0.976 27 H 0.094 0.906 28 H 0.060 0.940 29 H 0.096 0.904 30 H 0.118 0.882 31 H 0.247 0.753 32 H 0.088 0.912 33 H 0.125 0.875 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.113 0.887 37 H 0.080 0.920 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.036 0.964 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.464 -21.711 2.384 22.515 hybrid contribution 0.355 1.886 0.061 1.920 sum 5.819 -19.825 2.445 20.805 Atomic orbital electron populations 1.69975 1.07055 1.27081 1.51367 1.25719 0.95664 1.02279 0.94952 0.85668 0.78669 0.79738 0.78235 1.19918 1.21253 1.19602 1.21594 0.93047 0.92212 1.50300 0.92972 1.18592 0.93091 0.92531 0.92996 1.21876 0.98160 0.94377 1.01050 1.21815 0.91189 0.98420 0.88994 1.47408 1.38106 1.20960 1.29358 1.16086 0.80921 0.80710 0.82080 1.90834 1.47844 1.81723 1.31837 1.45267 1.41998 1.16061 1.35177 1.19663 0.98671 0.84633 0.88073 0.91350 1.22344 1.00123 0.99081 0.98994 1.22321 0.97232 0.96251 0.99503 1.20581 0.99695 0.92816 0.99756 1.21596 0.98770 0.98074 0.96840 1.21849 1.02752 0.92549 0.98402 1.21415 0.90918 0.85210 1.00936 1.21781 0.99306 0.95659 0.98280 0.93054 0.97571 0.90625 0.93987 0.90390 0.88168 0.75324 0.91205 0.87483 0.89154 0.89426 0.88681 0.92012 0.90017 0.89765 0.91714 0.91897 0.96429 0.90914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.52 11.30 21.45 0.24 -52.28 16 2 C 0.01 0.69 5.30 84.66 0.45 1.14 16 3 Si 0.95 43.58 29.54 68.60 2.03 45.61 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 5 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 7 C -0.53 -28.96 8.56 25.60 0.22 -28.74 16 8 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 9 C 0.05 2.25 2.06 -11.51 -0.02 2.23 16 10 C -0.12 -4.40 5.30 30.67 0.16 -4.24 16 11 C 0.12 3.56 6.39 86.36 0.55 4.11 16 12 N -0.62 -22.76 2.97 -836.93 -2.49 -25.25 16 13 C 0.70 25.65 8.24 179.05 1.48 27.12 16 14 O -0.64 -28.73 15.47 -4.00 -0.06 -28.79 16 15 N -0.73 -19.34 4.96 -462.32 -2.29 -21.64 16 16 C 0.19 4.60 2.67 44.05 0.12 4.72 16 17 H 0.07 1.95 7.65 -2.38 -0.02 1.93 16 18 C -0.19 -4.65 9.32 27.04 0.25 -4.40 16 19 C -0.13 -2.51 9.80 27.04 0.27 -2.24 16 20 C -0.09 -1.10 6.11 29.66 0.18 -0.92 16 21 C -0.11 -1.33 6.01 30.71 0.18 -1.15 16 22 C -0.12 -1.71 5.47 30.71 0.17 -1.54 16 23 C 0.14 5.85 6.44 86.36 0.56 6.40 16 24 C -0.11 -5.45 5.15 30.67 0.16 -5.29 16 25 H 0.26 14.30 8.31 -92.71 -0.77 13.52 16 26 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 27 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 28 H 0.04 1.66 8.14 -2.39 -0.02 1.65 16 29 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.10 2.20 5.65 -2.39 -0.01 2.19 16 31 H 0.41 8.42 6.08 -92.71 -0.56 7.85 16 32 H 0.07 2.23 8.06 -2.91 -0.02 2.21 16 33 H 0.11 1.87 8.06 -2.91 -0.02 1.84 16 34 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.06 0.82 8.13 -2.38 -0.02 0.80 16 38 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.08 1.03 8.11 -2.39 -0.02 1.01 16 40 H 0.06 2.87 7.00 -2.39 -0.02 2.85 16 41 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 42 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.07 4.00 6.03 -2.39 -0.01 3.98 16 Total: -1.00 -68.51 334.62 2.56 -65.95 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: 0.42 Total: 19.19 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: 4.72 Total: -2.80 kcal Atomic # 7 Polarization: -94.63 SS G_CDS: -4.54 Total: -99.17 kcal Atomic # 8 Polarization: -28.73 SS G_CDS: -0.06 Total: -28.79 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -68.51 2.56 -65.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335846055.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.702 kcal (2) G-P(sol) polarization free energy of solvation -68.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds