Wall clock time and date at job start Tue Mar 31 2020 00:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86806 * 119.99660 * 2 1 4 4 H 1.48504 * 109.46630 * 239.99832 * 3 2 1 5 5 H 1.48493 * 109.46955 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47041 * 119.99966 * 3 2 1 7 7 C 1.37872 * 119.99788 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99748 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00558 * 0.02562 * 7 2 1 10 10 C 1.53041 * 109.46175 * 179.97438 * 9 7 2 11 11 C 1.53189 * 109.30988 * 181.38525 * 10 9 7 12 12 N 1.46924 * 108.77720 * 305.36155 * 11 10 9 13 13 C 1.34781 * 120.63243 * 233.58709 * 12 11 10 14 14 O 1.21586 * 119.99688 * 5.22159 * 13 12 11 15 15 N 1.34773 * 119.99815 * 185.22367 * 13 12 11 16 16 C 1.46497 * 119.99770 * 175.02136 * 15 13 12 17 17 H 1.09007 * 109.35830 * 324.71902 * 16 15 13 18 18 C 1.50064 * 109.25114 * 84.37773 * 16 15 13 19 19 C 1.29445 * 124.07896 * 137.26482 * 18 16 15 20 20 C 1.50071 * 124.07388 * 359.51316 * 19 18 16 21 21 C 1.53445 * 110.26612 * 17.12299 * 20 19 18 22 22 C 1.53023 * 109.35820 * 204.99899 * 16 15 13 23 23 C 1.46928 * 118.73827 * 53.86413 * 12 11 10 24 24 C 1.53042 * 109.45614 * 300.06780 * 9 7 2 25 25 H 0.96998 * 120.00575 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.45725 * 60.02567 * 9 7 2 27 27 H 1.08996 * 109.49425 * 61.43543 * 10 9 7 28 28 H 1.09000 * 109.52241 * 301.35251 * 10 9 7 29 29 H 1.09003 * 109.58414 * 185.57962 * 11 10 9 30 30 H 1.09000 * 109.70332 * 65.22360 * 11 10 9 31 31 H 0.96996 * 120.00292 * 355.01737 * 15 13 12 32 32 H 1.08009 * 117.96103 * 317.29383 * 18 16 15 33 33 H 1.07996 * 117.96341 * 179.53270 * 19 18 16 34 34 H 1.09004 * 109.35682 * 137.35593 * 20 19 18 35 35 H 1.08990 * 109.35563 * 257.08070 * 20 19 18 36 36 H 1.08996 * 109.94145 * 190.99327 * 21 20 19 37 37 H 1.09001 * 109.56475 * 70.22451 * 21 20 19 38 38 H 1.08997 * 109.64451 * 310.17614 * 22 16 15 39 39 H 1.09005 * 109.64283 * 70.59740 * 22 16 15 40 40 H 1.09006 * 109.58684 * 65.92542 * 23 12 11 41 41 H 1.08993 * 109.58820 * 186.35219 * 23 12 11 42 42 H 1.08998 * 109.50078 * 298.56005 * 24 9 7 43 43 H 1.08999 * 109.50237 * 58.63063 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2458 -3.6622 0.0005 11 6 1.4768 -4.9866 -0.0344 12 7 0.5224 -5.0089 1.0824 13 6 0.5115 -6.0352 1.9560 14 8 1.3566 -6.9062 1.8812 15 7 -0.4361 -6.0959 2.9125 16 6 -0.5148 -7.2646 3.7923 17 1 -0.2484 -8.1593 3.2295 18 6 0.4445 -7.0906 4.9331 19 6 0.1666 -7.3764 6.1646 20 6 -1.1575 -7.9119 6.6252 21 6 -1.9518 -8.4626 5.4334 22 6 -1.9435 -7.4054 4.3220 23 6 -0.4240 -3.8941 1.2254 24 6 0.3696 -2.5789 1.2491 25 1 -0.4851 0.8400 -0.0004 26 1 0.6252 -2.5571 -0.8899 27 1 2.8556 -3.6192 0.9029 28 1 2.8888 -3.5915 -0.8768 29 1 2.1753 -5.8174 0.0652 30 1 0.9376 -5.0736 -0.9777 31 1 -1.0659 -5.3659 3.0183 32 1 1.4281 -6.7022 4.7129 33 1 0.9352 -7.2194 6.9068 34 1 -0.9924 -8.7104 7.3485 35 1 -1.7274 -7.1106 7.0954 36 1 -2.9786 -8.6695 5.7347 37 1 -1.4812 -9.3772 5.0726 38 1 -2.2815 -6.4498 4.7229 39 1 -2.6048 -7.7182 3.5139 40 1 -1.1153 -3.8914 0.3826 41 1 -0.9800 -4.0039 2.1563 42 1 0.9967 -2.5461 2.1399 43 1 -0.3226 -1.7370 1.2602 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335846056.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:49 Heat of formation + Delta-G solvation = -25.521415 kcal Electronic energy + Delta-G solvation = -22147.616119 eV Core-core repulsion = 18999.298269 eV Total energy + Delta-G solvation = -3148.317850 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.14731 -38.46644 -36.70131 -34.08970 -33.41600 -31.23281 -31.17655 -30.02801 -28.94518 -26.05851 -23.54287 -22.68267 -22.49182 -22.07875 -20.09215 -18.93965 -18.10563 -17.57790 -16.53425 -16.20071 -15.75840 -14.93332 -14.70559 -14.45820 -13.94742 -13.65589 -13.43955 -13.10433 -12.94138 -12.76761 -12.71291 -12.65515 -12.37383 -12.17764 -11.60506 -11.33568 -11.25999 -10.93011 -10.81163 -10.66707 -10.50991 -10.37073 -10.14206 -9.73002 -9.52880 -9.14691 -9.12722 -8.96162 -8.87643 -8.37192 -7.87055 -6.03044 -4.09046 2.17328 3.14248 3.29872 3.34384 3.37727 3.58985 4.25943 4.40996 4.56487 4.59302 4.79512 5.01924 5.22941 5.26099 5.32419 5.38687 5.46281 5.58194 5.67062 5.67967 5.77481 5.84316 5.96575 6.05449 6.10006 6.14996 6.20270 6.27931 6.49290 6.53314 6.68883 6.69941 6.89458 6.93536 7.01782 7.16676 7.24359 7.48831 7.67365 7.93201 8.03746 8.35241 8.41211 8.94151 8.98908 9.55953 11.02331 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027364 B = 0.003783 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.002206 B = 7400.161829 C = 7769.784052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.512 4.512 8 H 0.054 0.946 9 C 0.050 3.950 10 C -0.124 4.124 11 C 0.129 3.871 12 N -0.619 5.619 13 C 0.705 3.295 14 O -0.604 6.604 15 N -0.745 5.745 16 C 0.195 3.805 17 H 0.093 0.907 18 C -0.152 4.152 19 C -0.159 4.159 20 C -0.091 4.091 21 C -0.116 4.116 22 C -0.127 4.127 23 C 0.110 3.890 24 C -0.123 4.123 25 H 0.260 0.740 26 H 0.027 0.973 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.078 0.922 30 H 0.057 0.943 31 H 0.396 0.604 32 H 0.106 0.894 33 H 0.102 0.898 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.061 0.939 41 H 0.056 0.944 42 H 0.038 0.962 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.206 -13.308 9.531 17.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.550 4.550 8 H 0.072 0.928 9 C 0.031 3.969 10 C -0.162 4.162 11 C 0.007 3.993 12 N -0.355 5.355 13 C 0.407 3.593 14 O -0.484 6.484 15 N -0.402 5.402 16 C 0.090 3.910 17 H 0.111 0.889 18 C -0.171 4.171 19 C -0.178 4.178 20 C -0.128 4.128 21 C -0.154 4.154 22 C -0.165 4.165 23 C -0.013 4.013 24 C -0.161 4.161 25 H 0.070 0.930 26 H 0.045 0.955 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.097 0.903 30 H 0.075 0.925 31 H 0.233 0.767 32 H 0.124 0.876 33 H 0.120 0.880 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.057 0.943 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -5.750 -13.802 9.427 17.676 hybrid contribution 0.286 1.507 0.146 1.541 sum -5.464 -12.295 9.574 16.513 Atomic orbital electron populations 1.69824 1.05833 1.26533 1.50982 1.24954 0.94874 0.99021 0.95091 0.86676 0.79635 0.83182 0.78623 1.20304 1.21320 1.20359 1.21190 0.92942 0.90631 1.50248 0.92764 1.18609 0.92640 0.91725 0.93885 1.22017 0.98898 0.94390 1.00914 1.21562 0.91229 0.99584 0.86952 1.47420 1.38048 1.21015 1.29008 1.15881 0.81671 0.82383 0.79358 1.90848 1.40108 1.41421 1.76052 1.45368 1.36058 1.23033 1.35769 1.19518 0.93453 0.89130 0.88896 0.88941 1.22563 1.00337 0.99916 0.94329 1.22014 0.97924 1.01467 0.96399 1.20538 0.94199 1.00262 0.97819 1.21645 1.00333 0.98316 0.95086 1.21868 0.95596 1.00250 0.98777 1.21979 0.91603 0.88020 0.99663 1.22088 0.99966 0.94429 0.99636 0.92960 0.95478 0.93002 0.92191 0.90313 0.92510 0.76665 0.87562 0.87987 0.91164 0.90932 0.91174 0.91418 0.91116 0.90965 0.92022 0.92548 0.94315 0.87888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.38 11.30 55.43 0.63 -23.75 16 2 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 3 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.51 -13.70 8.56 -34.44 -0.29 -13.99 16 8 H 0.05 1.45 7.74 -52.48 -0.41 1.05 16 9 C 0.05 1.19 2.06 -91.73 -0.19 1.00 16 10 C -0.12 -2.59 5.30 -26.61 -0.14 -2.73 16 11 C 0.13 2.44 6.44 -3.71 -0.02 2.41 16 12 N -0.62 -11.43 2.97 -178.23 -0.53 -11.96 16 13 C 0.71 12.94 8.23 -86.92 -0.72 12.22 16 14 O -0.60 -12.84 15.47 5.29 0.08 -12.75 16 15 N -0.74 -10.79 4.96 -60.11 -0.30 -11.09 16 16 C 0.20 2.47 2.67 -69.38 -0.19 2.28 16 17 H 0.09 1.31 7.66 -51.92 -0.40 0.91 16 18 C -0.15 -1.96 9.31 -35.90 -0.33 -2.30 16 19 C -0.16 -1.69 9.81 -35.90 -0.35 -2.04 16 20 C -0.09 -0.75 6.12 -27.96 -0.17 -0.92 16 21 C -0.12 -0.92 6.05 -26.30 -0.16 -1.08 16 22 C -0.13 -1.18 5.46 -26.51 -0.14 -1.33 16 23 C 0.11 1.96 6.42 -3.48 -0.02 1.94 16 24 C -0.12 -2.70 5.17 -26.38 -0.14 -2.84 16 25 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 26 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.08 1.49 7.00 -51.93 -0.36 1.13 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.40 5.10 6.07 -40.82 -0.25 4.85 16 32 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 33 H 0.10 1.00 8.06 -52.49 -0.42 0.58 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.55 8.13 -51.93 -0.42 0.13 16 38 H 0.07 0.63 8.11 -51.93 -0.42 0.21 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.06 0.85 5.64 -51.93 -0.29 0.56 16 42 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.10 2.51 6.03 -51.93 -0.31 2.20 16 LS Contribution 334.68 15.07 5.04 5.04 Total: -1.00 -29.56 334.68 -10.13 -39.70 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -7.07 Total: 4.76 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: -2.96 Total: -5.81 kcal Atomic # 7 Polarization: -46.61 SS G_CDS: -0.20 Total: -46.81 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: 0.08 Total: -12.75 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.56 -10.13 -39.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335846056.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.174 kcal (2) G-P(sol) polarization free energy of solvation -29.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds