Wall clock time and date at job start Tue Mar 31 2020 00:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86806 * 119.99660 * 2 1 4 4 H 1.48504 * 109.46630 * 239.99832 * 3 2 1 5 5 H 1.48493 * 109.46955 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47041 * 119.99966 * 3 2 1 7 7 C 1.37872 * 119.99788 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99748 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00558 * 0.02562 * 7 2 1 10 10 C 1.53041 * 109.46175 * 179.97438 * 9 7 2 11 11 C 1.53189 * 109.30988 * 181.38525 * 10 9 7 12 12 N 1.46924 * 108.77720 * 305.36155 * 11 10 9 13 13 C 1.34781 * 120.63243 * 233.58709 * 12 11 10 14 14 O 1.21586 * 119.99688 * 5.22159 * 13 12 11 15 15 N 1.34773 * 119.99815 * 185.22367 * 13 12 11 16 16 C 1.46497 * 119.99770 * 175.02136 * 15 13 12 17 17 H 1.09007 * 109.35830 * 324.71902 * 16 15 13 18 18 C 1.50064 * 109.25114 * 84.37773 * 16 15 13 19 19 C 1.29445 * 124.07896 * 137.26482 * 18 16 15 20 20 C 1.50071 * 124.07388 * 359.51316 * 19 18 16 21 21 C 1.53445 * 110.26612 * 17.12299 * 20 19 18 22 22 C 1.53023 * 109.35820 * 204.99899 * 16 15 13 23 23 C 1.46928 * 118.73827 * 53.86413 * 12 11 10 24 24 C 1.53042 * 109.45614 * 300.06780 * 9 7 2 25 25 H 0.96998 * 120.00575 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.45725 * 60.02567 * 9 7 2 27 27 H 1.08996 * 109.49425 * 61.43543 * 10 9 7 28 28 H 1.09000 * 109.52241 * 301.35251 * 10 9 7 29 29 H 1.09003 * 109.58414 * 185.57962 * 11 10 9 30 30 H 1.09000 * 109.70332 * 65.22360 * 11 10 9 31 31 H 0.96996 * 120.00292 * 355.01737 * 15 13 12 32 32 H 1.08009 * 117.96103 * 317.29383 * 18 16 15 33 33 H 1.07996 * 117.96341 * 179.53270 * 19 18 16 34 34 H 1.09004 * 109.35682 * 137.35593 * 20 19 18 35 35 H 1.08990 * 109.35563 * 257.08070 * 20 19 18 36 36 H 1.08996 * 109.94145 * 190.99327 * 21 20 19 37 37 H 1.09001 * 109.56475 * 70.22451 * 21 20 19 38 38 H 1.08997 * 109.64451 * 310.17614 * 22 16 15 39 39 H 1.09005 * 109.64283 * 70.59740 * 22 16 15 40 40 H 1.09006 * 109.58684 * 65.92542 * 23 12 11 41 41 H 1.08993 * 109.58820 * 186.35219 * 23 12 11 42 42 H 1.08998 * 109.50078 * 298.56005 * 24 9 7 43 43 H 1.08999 * 109.50237 * 58.63063 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2458 -3.6622 0.0005 11 6 1.4768 -4.9866 -0.0344 12 7 0.5224 -5.0089 1.0824 13 6 0.5115 -6.0352 1.9560 14 8 1.3566 -6.9062 1.8812 15 7 -0.4361 -6.0959 2.9125 16 6 -0.5148 -7.2646 3.7923 17 1 -0.2484 -8.1593 3.2295 18 6 0.4445 -7.0906 4.9331 19 6 0.1666 -7.3764 6.1646 20 6 -1.1575 -7.9119 6.6252 21 6 -1.9518 -8.4626 5.4334 22 6 -1.9435 -7.4054 4.3220 23 6 -0.4240 -3.8941 1.2254 24 6 0.3696 -2.5789 1.2491 25 1 -0.4851 0.8400 -0.0004 26 1 0.6252 -2.5571 -0.8899 27 1 2.8556 -3.6192 0.9029 28 1 2.8888 -3.5915 -0.8768 29 1 2.1753 -5.8174 0.0652 30 1 0.9376 -5.0736 -0.9777 31 1 -1.0659 -5.3659 3.0183 32 1 1.4281 -6.7022 4.7129 33 1 0.9352 -7.2194 6.9068 34 1 -0.9924 -8.7104 7.3485 35 1 -1.7274 -7.1106 7.0954 36 1 -2.9786 -8.6695 5.7347 37 1 -1.4812 -9.3772 5.0726 38 1 -2.2815 -6.4498 4.7229 39 1 -2.6048 -7.7182 3.5139 40 1 -1.1153 -3.8914 0.3826 41 1 -0.9800 -4.0039 2.1563 42 1 0.9967 -2.5461 2.1399 43 1 -0.3226 -1.7370 1.2602 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335846056.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:49 Heat of formation + Delta-G solvation = -41.693562 kcal Electronic energy + Delta-G solvation = -22148.317396 eV Core-core repulsion = 18999.298269 eV Total energy + Delta-G solvation = -3149.019127 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.51194 -39.53145 -38.24719 -35.45417 -35.11098 -32.95685 -31.97825 -31.66576 -30.01483 -27.85967 -24.98674 -24.14216 -23.50249 -23.28216 -21.65070 -20.41825 -19.34779 -18.72705 -18.25443 -17.61660 -16.92073 -16.52798 -16.29540 -15.72564 -15.23342 -14.91433 -14.74526 -14.58744 -14.37728 -14.21932 -13.84855 -13.70841 -13.51534 -13.22188 -13.20324 -13.08723 -12.79942 -12.48147 -12.15143 -12.11631 -11.94104 -11.54173 -11.48602 -11.34891 -11.18669 -10.99764 -10.78846 -10.39763 -10.18950 -9.99383 -9.39389 -8.07578 -6.20721 1.21375 1.42720 1.43122 1.50614 1.84272 2.14255 2.44342 2.96571 3.18675 3.74679 3.82222 4.04721 4.11658 4.21259 4.25048 4.34264 4.43062 4.47611 4.50768 4.58445 4.63613 4.68546 4.75803 4.87988 4.92917 4.99274 5.05338 5.14233 5.20561 5.22292 5.32835 5.38746 5.43097 5.49435 5.54995 5.65790 5.70559 5.97072 5.99611 6.08841 6.13246 6.40008 6.87944 6.98710 7.46694 7.57153 8.95520 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027364 B = 0.003783 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.002206 B = 7400.161829 C = 7769.784052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.019 3.981 3 Si 0.948 3.052 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.277 1.277 7 C -0.538 4.538 8 H 0.045 0.955 9 C 0.047 3.953 10 C -0.114 4.114 11 C 0.135 3.865 12 N -0.623 5.623 13 C 0.702 3.298 14 O -0.637 6.637 15 N -0.731 5.731 16 C 0.195 3.805 17 H 0.072 0.928 18 C -0.185 4.185 19 C -0.135 4.135 20 C -0.092 4.092 21 C -0.113 4.113 22 C -0.120 4.120 23 C 0.121 3.879 24 C -0.113 4.113 25 H 0.262 0.738 26 H 0.006 0.994 27 H 0.036 0.964 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.406 0.594 32 H 0.071 0.929 33 H 0.108 0.892 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.063 0.937 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.088 0.912 42 H 0.022 0.978 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.779 -13.905 10.932 19.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.180 4.180 3 Si 0.774 3.226 4 H -0.200 1.200 5 H -0.207 1.207 6 H -0.202 1.202 7 C -0.576 4.576 8 H 0.064 0.936 9 C 0.029 3.971 10 C -0.152 4.152 11 C 0.012 3.988 12 N -0.359 5.359 13 C 0.403 3.597 14 O -0.519 6.519 15 N -0.388 5.388 16 C 0.090 3.910 17 H 0.090 0.910 18 C -0.205 4.205 19 C -0.154 4.154 20 C -0.129 4.129 21 C -0.151 4.151 22 C -0.158 4.158 23 C -0.001 4.001 24 C -0.152 4.152 25 H 0.071 0.929 26 H 0.024 0.976 27 H 0.055 0.945 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.089 0.911 31 H 0.244 0.756 32 H 0.090 0.910 33 H 0.126 0.874 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.113 0.887 37 H 0.082 0.918 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.088 0.912 41 H 0.106 0.894 42 H 0.041 0.959 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.348 -14.402 10.850 19.471 hybrid contribution 0.809 1.678 -0.229 1.876 sum -6.539 -12.724 10.621 17.817 Atomic orbital electron populations 1.69928 1.06719 1.27210 1.51103 1.25612 0.95725 1.01843 0.94799 0.85772 0.78563 0.79713 0.78534 1.19990 1.20652 1.20217 1.21529 0.92874 0.92383 1.50793 0.93647 1.18580 0.93007 0.91787 0.93740 1.21866 0.98341 0.94613 1.00385 1.21455 0.91419 0.98000 0.87924 1.47417 1.38098 1.21284 1.29060 1.16049 0.81966 0.81873 0.79770 1.90821 1.41565 1.42593 1.76937 1.45343 1.34867 1.23867 1.34751 1.19659 0.95765 0.87370 0.88159 0.91010 1.22356 0.99313 1.03229 0.95598 1.22320 0.99275 0.98365 0.95425 1.20646 0.92638 1.01254 0.98367 1.21679 1.01719 0.97494 0.94232 1.21869 0.92969 1.01363 0.99598 1.21854 0.90938 0.85548 1.01772 1.21854 0.99294 0.96133 0.97923 0.92873 0.97552 0.94490 0.91706 0.90417 0.91052 0.75573 0.91026 0.87400 0.89274 0.89421 0.88682 0.91794 0.90218 0.90041 0.91188 0.89354 0.95895 0.90078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.03 11.30 21.45 0.24 -49.79 16 2 C 0.02 1.04 5.30 84.65 0.45 1.49 16 3 Si 0.95 42.96 29.54 68.60 2.03 44.99 16 4 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 7 C -0.54 -29.31 8.56 25.60 0.22 -29.10 16 8 H 0.05 2.48 7.74 -2.91 -0.02 2.46 16 9 C 0.05 2.30 2.06 -11.51 -0.02 2.28 16 10 C -0.11 -4.83 5.30 30.67 0.16 -4.66 16 11 C 0.14 5.08 6.44 86.36 0.56 5.64 16 12 N -0.62 -22.75 2.97 -836.06 -2.48 -25.23 16 13 C 0.70 25.64 8.23 179.05 1.47 27.11 16 14 O -0.64 -27.49 15.47 -3.99 -0.06 -27.55 16 15 N -0.73 -20.56 4.96 -462.34 -2.29 -22.85 16 16 C 0.19 4.78 2.67 44.05 0.12 4.90 16 17 H 0.07 2.05 7.66 -2.38 -0.02 2.03 16 18 C -0.19 -4.76 9.31 27.03 0.25 -4.51 16 19 C -0.13 -2.63 9.81 27.04 0.27 -2.37 16 20 C -0.09 -1.20 6.12 29.80 0.18 -1.01 16 21 C -0.11 -1.42 6.05 30.88 0.19 -1.23 16 22 C -0.12 -1.92 5.46 30.73 0.17 -1.75 16 23 C 0.12 4.21 6.42 86.51 0.56 4.77 16 24 C -0.11 -5.05 5.17 30.82 0.16 -4.89 16 25 H 0.26 13.76 8.31 -92.71 -0.77 12.99 16 26 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 27 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 29 H 0.08 2.96 7.00 -2.39 -0.02 2.94 16 30 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 31 H 0.41 9.67 6.07 -92.71 -0.56 9.11 16 32 H 0.07 2.31 8.06 -2.91 -0.02 2.28 16 33 H 0.11 1.95 8.06 -2.91 -0.02 1.93 16 34 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.06 0.87 8.13 -2.39 -0.02 0.85 16 38 H 0.08 1.16 8.11 -2.39 -0.02 1.14 16 39 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 40 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 41 H 0.09 2.49 5.64 -2.39 -0.01 2.47 16 42 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.08 4.00 6.03 -2.39 -0.01 3.99 16 Total: -1.00 -64.91 334.68 2.58 -62.34 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: 0.42 Total: 21.43 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: 4.72 Total: -3.33 kcal Atomic # 7 Polarization: -93.34 SS G_CDS: -4.53 Total: -97.87 kcal Atomic # 8 Polarization: -27.49 SS G_CDS: -0.06 Total: -27.55 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -64.91 2.58 -62.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335846056.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.642 kcal (2) G-P(sol) polarization free energy of solvation -64.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds