Wall clock time and date at job start Tue Mar 31 2020 00:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 119.99943 * 2 1 4 4 H 1.48506 * 109.46909 * 269.99759 * 3 2 1 5 5 H 1.48499 * 109.47523 * 29.99473 * 3 2 1 6 6 H 1.48495 * 109.47206 * 149.99826 * 3 2 1 7 7 C 1.37881 * 119.99762 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99293 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99982 * 0.02562 * 7 2 1 10 10 C 1.53042 * 109.45803 * 179.97438 * 9 7 2 11 11 C 1.53192 * 109.31368 * 178.61447 * 10 9 7 12 12 N 1.46920 * 108.77378 * 54.63692 * 11 10 9 13 13 C 1.34784 * 120.63103 * 126.36815 * 12 11 10 14 14 O 1.21587 * 119.99810 * 174.95979 * 13 12 11 15 15 N 1.34769 * 119.99943 * 354.96504 * 13 12 11 16 16 C 1.46504 * 120.00303 * 185.07265 * 15 13 12 17 17 H 1.09002 * 109.63789 * 34.56809 * 16 15 13 18 18 C 1.53025 * 109.63722 * 273.94251 * 16 15 13 19 19 C 1.50067 * 110.14526 * 190.87349 * 18 16 15 20 20 C 1.29449 * 124.07562 * 17.13582 * 19 18 16 21 21 C 1.50065 * 124.07125 * 359.52427 * 20 19 18 22 22 C 1.53018 * 110.14918 * 17.13853 * 21 20 19 23 23 C 1.46930 * 118.73985 * 306.64238 * 12 11 10 24 24 C 1.52756 * 109.00641 * 53.31248 * 23 12 11 25 25 H 0.97006 * 120.00438 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.45380 * 299.95940 * 9 7 2 27 27 H 1.09005 * 109.49581 * 58.66351 * 10 9 7 28 28 H 1.09003 * 109.52740 * 298.58704 * 10 9 7 29 29 H 1.08995 * 109.58492 * 294.84923 * 11 10 9 30 30 H 1.08998 * 109.58389 * 174.42298 * 11 10 9 31 31 H 0.97000 * 120.00277 * 5.06538 * 15 13 12 32 32 H 1.08997 * 109.35891 * 311.08162 * 18 16 15 33 33 H 1.08997 * 109.35892 * 70.67177 * 18 16 15 34 34 H 1.07998 * 117.96605 * 197.15110 * 19 18 16 35 35 H 1.07993 * 117.96145 * 179.50655 * 20 19 18 36 36 H 1.08999 * 109.36008 * 256.91980 * 21 20 19 37 37 H 1.09006 * 109.24153 * 137.27262 * 21 20 19 38 38 H 1.09004 * 109.64036 * 190.88038 * 22 21 20 39 39 H 1.08990 * 109.82264 * 70.34732 * 22 21 20 40 40 H 1.09002 * 109.58686 * 173.14295 * 23 12 11 41 41 H 1.08996 * 109.58788 * 293.57096 * 23 12 11 42 42 H 1.09003 * 109.56227 * 185.55522 * 24 23 12 43 43 H 1.08996 * 109.39140 * 65.51499 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2457 -3.6622 0.0005 11 6 1.4766 -4.9866 0.0355 12 7 0.5223 -5.0089 -1.0813 13 6 0.5120 -6.0347 -1.9555 14 8 -0.3408 -6.0878 -2.8205 15 7 1.4470 -7.0017 -1.8708 16 6 1.5044 -8.0562 -2.8861 17 1 1.2255 -7.6459 -3.8567 18 6 0.5467 -9.1879 -2.5069 19 6 0.7847 -10.3821 -3.3840 20 6 1.8542 -10.5611 -4.0909 21 6 3.0011 -9.5945 -4.1401 22 6 2.9263 -8.6273 -2.9568 23 6 -0.4166 -3.8886 -1.2308 24 6 0.3700 -2.5793 -1.2483 25 1 -0.4851 0.8401 -0.0004 26 1 0.6246 -2.5567 0.8907 27 1 2.8883 -3.5913 0.8782 28 1 2.8561 -3.6196 -0.9016 29 1 0.9372 -5.0711 0.9788 30 1 2.1752 -5.8174 -0.0641 31 1 2.0821 -6.9994 -1.1376 32 1 0.7102 -9.4659 -1.4658 33 1 -0.4815 -8.8479 -2.6308 34 1 0.0158 -11.1392 -3.4283 35 1 1.9257 -11.4622 -4.6818 36 1 2.9582 -9.0301 -5.0716 37 1 3.9393 -10.1477 -4.0958 38 1 3.6401 -7.8161 -3.1009 39 1 3.1550 -9.1565 -2.0318 40 1 -0.9669 -3.9953 -2.1656 41 1 -1.1136 -3.8818 -0.3928 42 1 -0.3226 -1.7376 -1.2596 43 1 0.9975 -2.5460 -2.1389 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335979059.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:09 Heat of formation + Delta-G solvation = -26.059074 kcal Electronic energy + Delta-G solvation = -22124.649407 eV Core-core repulsion = 18976.308243 eV Total energy + Delta-G solvation = -3148.341164 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.16666 -38.48727 -36.72641 -34.14831 -33.42078 -31.10876 -30.97166 -30.34156 -28.97795 -26.07635 -23.62681 -23.01224 -22.52983 -21.70362 -20.13438 -18.96406 -18.09391 -17.45275 -16.59484 -16.30571 -15.56889 -14.97155 -14.61551 -14.43537 -13.90092 -13.72542 -13.53504 -13.34760 -13.05874 -12.78017 -12.61752 -12.51771 -12.44867 -12.17738 -11.83291 -11.18274 -11.11344 -10.93830 -10.81789 -10.66600 -10.65452 -10.40816 -10.05019 -9.71360 -9.54566 -9.18003 -9.15964 -8.94817 -8.83639 -8.35962 -7.86592 -6.01066 -4.07885 2.13193 3.02372 3.29147 3.36336 3.38608 3.59934 4.19529 4.41713 4.58164 4.60448 4.81008 5.10906 5.18757 5.26583 5.28642 5.37755 5.41311 5.48404 5.64567 5.72444 5.77387 5.83585 5.94038 6.00946 6.05707 6.15122 6.31082 6.43635 6.44831 6.52225 6.63091 6.75068 6.78231 6.84785 6.99299 7.17743 7.26138 7.52238 7.72122 7.94269 8.07394 8.35652 8.41238 8.95412 8.99412 9.57130 11.04265 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.038208 B = 0.003520 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.654067 B = 7952.781692 C = 8248.508010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.514 4.514 8 H 0.054 0.946 9 C 0.050 3.950 10 C -0.124 4.124 11 C 0.113 3.887 12 N -0.618 5.618 13 C 0.705 3.295 14 O -0.600 6.600 15 N -0.749 5.749 16 C 0.166 3.834 17 H 0.088 0.912 18 C -0.105 4.105 19 C -0.144 4.144 20 C -0.165 4.165 21 C -0.085 4.085 22 C -0.128 4.128 23 C 0.127 3.873 24 C -0.124 4.124 25 H 0.261 0.739 26 H 0.027 0.973 27 H 0.059 0.941 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.394 0.606 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.055 0.945 42 H 0.104 0.896 43 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.617 -18.391 -3.464 19.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.552 4.552 8 H 0.072 0.928 9 C 0.031 3.969 10 C -0.162 4.162 11 C -0.010 4.010 12 N -0.355 5.355 13 C 0.407 3.593 14 O -0.480 6.480 15 N -0.406 5.406 16 C 0.060 3.940 17 H 0.106 0.894 18 C -0.143 4.143 19 C -0.162 4.162 20 C -0.183 4.183 21 C -0.123 4.123 22 C -0.166 4.166 23 C 0.005 3.995 24 C -0.163 4.163 25 H 0.071 0.929 26 H 0.045 0.955 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.230 0.770 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.074 0.926 42 H 0.122 0.878 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 3.833 -18.263 -4.089 19.104 hybrid contribution 0.767 0.858 0.391 1.216 sum 4.600 -17.405 -3.698 18.379 Atomic orbital electron populations 1.69845 1.05848 1.26480 1.50688 1.24967 0.94861 0.99062 0.95096 0.86620 0.79847 0.83593 0.78076 1.20746 1.21259 1.20003 1.21186 0.92847 0.90623 1.50530 0.92779 1.18615 0.92563 0.91504 0.94178 1.22016 0.98945 0.94389 1.00861 1.21704 0.91216 0.98886 0.89199 1.47457 1.38288 1.21285 1.28454 1.15887 0.81755 0.79685 0.81995 1.90857 1.39474 1.78963 1.38687 1.45370 1.36290 1.28272 1.30702 1.20746 0.94477 0.86347 0.92383 0.89405 1.20902 1.01212 0.93264 0.98921 1.22037 0.97649 0.98325 0.98236 1.22031 0.95810 0.99832 1.00649 1.20386 0.97294 0.96086 0.98525 1.21899 0.96359 0.99159 0.99234 1.21666 0.90983 0.85543 1.01261 1.21956 1.00136 0.94984 0.99193 0.92946 0.95485 0.92216 0.92918 0.91937 0.92296 0.76961 0.90805 0.90201 0.87931 0.87965 0.90578 0.90748 0.90832 0.91279 0.90639 0.92649 0.87822 0.94450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.80 11.30 55.43 0.63 -24.17 16 2 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 3 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.51 -13.65 8.56 -34.44 -0.29 -13.95 16 8 H 0.05 1.42 7.74 -52.48 -0.41 1.02 16 9 C 0.05 1.18 2.07 -91.73 -0.19 0.99 16 10 C -0.12 -2.37 5.30 -26.61 -0.14 -2.51 16 11 C 0.11 1.81 6.43 -3.71 -0.02 1.79 16 12 N -0.62 -11.35 2.98 -178.77 -0.53 -11.89 16 13 C 0.71 12.81 8.27 -86.92 -0.72 12.10 16 14 O -0.60 -12.93 15.49 5.29 0.08 -12.84 16 15 N -0.75 -10.31 5.00 -58.46 -0.29 -10.60 16 16 C 0.17 2.03 2.48 -67.71 -0.17 1.86 16 17 H 0.09 1.28 7.64 -51.93 -0.40 0.88 16 18 C -0.10 -1.20 5.71 -28.18 -0.16 -1.36 16 19 C -0.14 -1.40 9.80 -35.90 -0.35 -1.76 16 20 C -0.17 -1.45 9.80 -35.90 -0.35 -1.80 16 21 C -0.09 -0.70 6.12 -28.18 -0.17 -0.87 16 22 C -0.13 -1.18 5.49 -26.52 -0.15 -1.33 16 23 C 0.13 2.61 6.39 -3.93 -0.03 2.59 16 24 C -0.12 -2.89 5.14 -26.83 -0.14 -3.03 16 25 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 26 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.06 0.74 5.57 -51.93 -0.29 0.45 16 31 H 0.39 4.55 6.07 -40.82 -0.25 4.30 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.10 0.88 8.06 -52.49 -0.42 0.46 16 35 H 0.10 0.75 8.06 -52.49 -0.42 0.33 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.57 8.13 -51.93 -0.42 0.15 16 40 H 0.08 1.59 7.04 -51.93 -0.37 1.23 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.10 2.69 6.03 -51.93 -0.31 2.38 16 43 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 334.69 15.07 5.04 5.04 Total: -1.00 -29.98 334.69 -10.14 -40.12 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -7.07 Total: 4.13 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: -2.98 Total: -5.72 kcal Atomic # 7 Polarization: -46.46 SS G_CDS: -0.20 Total: -46.66 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: 0.08 Total: -12.84 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.98 -10.14 -40.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335979059.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.064 kcal (2) G-P(sol) polarization free energy of solvation -29.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds