Wall clock time and date at job start Tue Mar 31 2020 00:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 119.99943 * 2 1 4 4 H 1.48506 * 109.46909 * 269.99759 * 3 2 1 5 5 H 1.48499 * 109.47523 * 29.99473 * 3 2 1 6 6 H 1.48495 * 109.47206 * 149.99826 * 3 2 1 7 7 C 1.37881 * 119.99762 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99293 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99982 * 0.02562 * 7 2 1 10 10 C 1.53042 * 109.45803 * 179.97438 * 9 7 2 11 11 C 1.53192 * 109.31368 * 178.61447 * 10 9 7 12 12 N 1.46920 * 108.77378 * 54.63692 * 11 10 9 13 13 C 1.34784 * 120.63103 * 126.36815 * 12 11 10 14 14 O 1.21587 * 119.99810 * 174.95979 * 13 12 11 15 15 N 1.34769 * 119.99943 * 354.96504 * 13 12 11 16 16 C 1.46504 * 120.00303 * 185.07265 * 15 13 12 17 17 H 1.09002 * 109.63789 * 34.56809 * 16 15 13 18 18 C 1.53025 * 109.63722 * 273.94251 * 16 15 13 19 19 C 1.50067 * 110.14526 * 190.87349 * 18 16 15 20 20 C 1.29449 * 124.07562 * 17.13582 * 19 18 16 21 21 C 1.50065 * 124.07125 * 359.52427 * 20 19 18 22 22 C 1.53018 * 110.14918 * 17.13853 * 21 20 19 23 23 C 1.46930 * 118.73985 * 306.64238 * 12 11 10 24 24 C 1.52756 * 109.00641 * 53.31248 * 23 12 11 25 25 H 0.97006 * 120.00438 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.45380 * 299.95940 * 9 7 2 27 27 H 1.09005 * 109.49581 * 58.66351 * 10 9 7 28 28 H 1.09003 * 109.52740 * 298.58704 * 10 9 7 29 29 H 1.08995 * 109.58492 * 294.84923 * 11 10 9 30 30 H 1.08998 * 109.58389 * 174.42298 * 11 10 9 31 31 H 0.97000 * 120.00277 * 5.06538 * 15 13 12 32 32 H 1.08997 * 109.35891 * 311.08162 * 18 16 15 33 33 H 1.08997 * 109.35892 * 70.67177 * 18 16 15 34 34 H 1.07998 * 117.96605 * 197.15110 * 19 18 16 35 35 H 1.07993 * 117.96145 * 179.50655 * 20 19 18 36 36 H 1.08999 * 109.36008 * 256.91980 * 21 20 19 37 37 H 1.09006 * 109.24153 * 137.27262 * 21 20 19 38 38 H 1.09004 * 109.64036 * 190.88038 * 22 21 20 39 39 H 1.08990 * 109.82264 * 70.34732 * 22 21 20 40 40 H 1.09002 * 109.58686 * 173.14295 * 23 12 11 41 41 H 1.08996 * 109.58788 * 293.57096 * 23 12 11 42 42 H 1.09003 * 109.56227 * 185.55522 * 24 23 12 43 43 H 1.08996 * 109.39140 * 65.51499 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2457 -3.6622 0.0005 11 6 1.4766 -4.9866 0.0355 12 7 0.5223 -5.0089 -1.0813 13 6 0.5120 -6.0347 -1.9555 14 8 -0.3408 -6.0878 -2.8205 15 7 1.4470 -7.0017 -1.8708 16 6 1.5044 -8.0562 -2.8861 17 1 1.2255 -7.6459 -3.8567 18 6 0.5467 -9.1879 -2.5069 19 6 0.7847 -10.3821 -3.3840 20 6 1.8542 -10.5611 -4.0909 21 6 3.0011 -9.5945 -4.1401 22 6 2.9263 -8.6273 -2.9568 23 6 -0.4166 -3.8886 -1.2308 24 6 0.3700 -2.5793 -1.2483 25 1 -0.4851 0.8401 -0.0004 26 1 0.6246 -2.5567 0.8907 27 1 2.8883 -3.5913 0.8782 28 1 2.8561 -3.6196 -0.9016 29 1 0.9372 -5.0711 0.9788 30 1 2.1752 -5.8174 -0.0641 31 1 2.0821 -6.9994 -1.1376 32 1 0.7102 -9.4659 -1.4658 33 1 -0.4815 -8.8479 -2.6308 34 1 0.0158 -11.1392 -3.4283 35 1 1.9257 -11.4622 -4.6818 36 1 2.9582 -9.0301 -5.0716 37 1 3.9393 -10.1477 -4.0958 38 1 3.6401 -7.8161 -3.1009 39 1 3.1550 -9.1565 -2.0318 40 1 -0.9669 -3.9953 -2.1656 41 1 -1.1136 -3.8818 -0.3928 42 1 -0.3226 -1.7376 -1.2596 43 1 0.9975 -2.5460 -2.1389 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335979059.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:08 Heat of formation + Delta-G solvation = -42.846160 kcal Electronic energy + Delta-G solvation = -22125.377350 eV Core-core repulsion = 18976.308243 eV Total energy + Delta-G solvation = -3149.069107 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.51597 -39.53764 -38.25101 -35.51566 -35.07379 -32.88102 -31.90128 -31.67742 -30.11724 -27.89056 -24.96305 -24.23565 -23.89574 -22.90521 -21.65998 -20.42740 -19.33569 -18.57009 -18.23287 -17.64647 -16.70350 -16.51250 -16.38134 -15.60776 -15.26500 -14.93410 -14.74318 -14.55361 -14.38980 -14.21970 -14.07337 -13.84518 -13.42999 -13.29285 -13.18878 -12.99603 -12.80783 -12.46827 -12.16042 -12.04289 -11.90136 -11.68301 -11.49976 -11.40568 -11.22413 -10.91962 -10.78998 -10.40353 -10.16009 -9.85277 -9.37593 -8.06556 -6.20552 1.41871 1.42786 1.43574 1.52519 1.69544 2.16817 2.44683 2.94075 3.20090 3.76820 3.83934 4.00969 4.11305 4.24143 4.29987 4.34514 4.43932 4.47947 4.51509 4.60667 4.64983 4.70428 4.75170 4.91501 4.92300 4.98515 5.00829 5.09472 5.20053 5.23318 5.26138 5.32539 5.47819 5.51625 5.57949 5.67378 5.78726 5.99236 6.06377 6.09449 6.13253 6.39349 6.91278 7.03267 7.47634 7.58945 8.96859 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.038208 B = 0.003520 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.654067 B = 7952.781692 C = 8248.508010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.012 3.988 3 Si 0.951 3.049 4 H -0.281 1.281 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.532 4.532 8 H 0.054 0.946 9 C 0.046 3.954 10 C -0.115 4.115 11 C 0.117 3.883 12 N -0.622 5.622 13 C 0.701 3.299 14 O -0.639 6.639 15 N -0.730 5.730 16 C 0.162 3.838 17 H 0.059 0.941 18 C -0.099 4.099 19 C -0.163 4.163 20 C -0.156 4.156 21 C -0.088 4.088 22 C -0.120 4.120 23 C 0.140 3.860 24 C -0.111 4.111 25 H 0.260 0.740 26 H 0.004 0.996 27 H 0.074 0.926 28 H 0.046 0.954 29 H 0.074 0.926 30 H 0.102 0.898 31 H 0.408 0.592 32 H 0.083 0.917 33 H 0.049 0.951 34 H 0.111 0.889 35 H 0.121 0.879 36 H 0.074 0.926 37 H 0.098 0.902 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.064 0.936 41 H 0.058 0.942 42 H 0.072 0.928 43 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.877 -20.274 -3.087 21.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.187 4.187 3 Si 0.777 3.223 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.570 4.570 8 H 0.072 0.928 9 C 0.027 3.973 10 C -0.154 4.154 11 C -0.005 4.005 12 N -0.358 5.358 13 C 0.403 3.597 14 O -0.521 6.521 15 N -0.388 5.388 16 C 0.057 3.943 17 H 0.077 0.923 18 C -0.137 4.137 19 C -0.182 4.182 20 C -0.174 4.174 21 C -0.125 4.125 22 C -0.158 4.158 23 C 0.016 3.984 24 C -0.150 4.150 25 H 0.069 0.931 26 H 0.022 0.978 27 H 0.093 0.907 28 H 0.065 0.935 29 H 0.092 0.908 30 H 0.120 0.880 31 H 0.247 0.753 32 H 0.101 0.899 33 H 0.068 0.932 34 H 0.129 0.871 35 H 0.139 0.861 36 H 0.093 0.907 37 H 0.117 0.883 38 H 0.096 0.904 39 H 0.104 0.896 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.091 0.909 43 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 6.142 -20.182 -3.691 21.416 hybrid contribution 0.072 1.429 0.241 1.451 sum 6.213 -18.752 -3.450 20.054 Atomic orbital electron populations 1.69982 1.07091 1.27054 1.51448 1.25724 0.95645 1.02302 0.95005 0.85669 0.78909 0.79778 0.77961 1.20670 1.21099 1.19069 1.21596 0.93089 0.92131 1.50153 0.92823 1.18596 0.93122 0.92638 0.92930 1.21869 0.98098 0.94146 1.01255 1.21819 0.91266 0.98600 0.88806 1.47402 1.38397 1.20723 1.29303 1.16059 0.82077 0.80229 0.81325 1.90833 1.41228 1.79885 1.40192 1.45250 1.34997 1.27297 1.31233 1.20892 0.97007 0.85892 0.90519 0.92274 1.20783 0.99212 0.93675 1.00024 1.22033 0.98763 0.98138 0.99233 1.22279 0.95306 1.00311 0.99502 1.20474 0.98197 0.95932 0.97940 1.21880 0.93797 0.99540 1.00611 1.21306 0.91008 0.85190 1.00846 1.21712 0.99385 0.95518 0.98426 0.93096 0.97833 0.90730 0.93479 0.90806 0.87960 0.75294 0.89887 0.93199 0.87072 0.86117 0.90714 0.88335 0.90384 0.89575 0.91726 0.92379 0.90931 0.96102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.31 11.30 21.45 0.24 -52.07 16 2 C 0.01 0.64 5.30 84.66 0.45 1.09 16 3 Si 0.95 43.18 29.54 68.60 2.03 45.21 16 4 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 5 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 7 C -0.53 -28.46 8.56 25.60 0.22 -28.24 16 8 H 0.05 2.81 7.74 -2.91 -0.02 2.78 16 9 C 0.05 2.19 2.07 -11.51 -0.02 2.16 16 10 C -0.12 -4.25 5.30 30.67 0.16 -4.08 16 11 C 0.12 3.47 6.43 86.36 0.56 4.02 16 12 N -0.62 -22.37 2.98 -837.77 -2.50 -24.87 16 13 C 0.70 25.09 8.27 179.05 1.48 26.57 16 14 O -0.64 -28.04 15.49 -3.99 -0.06 -28.10 16 15 N -0.73 -18.77 5.00 -457.14 -2.29 -21.05 16 16 C 0.16 3.74 2.48 45.13 0.11 3.85 16 17 H 0.06 1.73 7.64 -2.39 -0.02 1.71 16 18 C -0.10 -2.16 5.71 29.66 0.17 -1.99 16 19 C -0.16 -2.92 9.80 27.03 0.27 -2.65 16 20 C -0.16 -2.32 9.80 27.03 0.27 -2.06 16 21 C -0.09 -1.18 6.12 29.66 0.18 -0.99 16 22 C -0.12 -1.85 5.49 30.73 0.17 -1.68 16 23 C 0.14 5.86 6.39 86.22 0.55 6.41 16 24 C -0.11 -5.36 5.14 30.53 0.16 -5.21 16 25 H 0.26 14.22 8.31 -92.70 -0.77 13.45 16 26 H 0.00 0.18 8.14 -2.39 -0.02 0.17 16 27 H 0.07 2.53 8.14 -2.38 -0.02 2.51 16 28 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.10 2.15 5.57 -2.39 -0.01 2.13 16 31 H 0.41 8.03 6.07 -92.71 -0.56 7.46 16 32 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.11 1.76 8.06 -2.91 -0.02 1.74 16 35 H 0.12 1.37 8.06 -2.91 -0.02 1.35 16 36 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.10 0.90 8.14 -2.38 -0.02 0.89 16 38 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 39 H 0.09 1.07 8.13 -2.39 -0.02 1.06 16 40 H 0.06 2.83 7.04 -2.39 -0.02 2.82 16 41 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 42 H 0.07 3.95 6.03 -2.39 -0.01 3.93 16 43 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -66.84 334.69 2.56 -64.28 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: 0.42 Total: 19.39 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: 4.71 Total: -2.80 kcal Atomic # 7 Polarization: -93.45 SS G_CDS: -4.54 Total: -97.99 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -0.06 Total: -28.10 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -66.84 2.56 -64.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335979059.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.437 kcal (2) G-P(sol) polarization free energy of solvation -66.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds