Wall clock time and date at job start Tue Mar 31 2020 00:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00444 * 2 1 4 4 H 1.48504 * 109.47095 * 270.00038 * 3 2 1 5 5 H 1.48503 * 109.46972 * 30.00098 * 3 2 1 6 6 H 1.48497 * 109.47202 * 150.00049 * 3 2 1 7 7 C 1.37881 * 119.99849 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00209 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99743 * 359.97438 * 7 2 1 10 10 C 1.53046 * 109.45898 * 180.02562 * 9 7 2 11 11 C 1.53191 * 109.33770 * 178.62909 * 10 9 7 12 12 N 1.46923 * 108.77443 * 54.62231 * 11 10 9 13 13 C 1.34783 * 120.63239 * 126.41001 * 12 11 10 14 14 O 1.21585 * 119.99662 * 354.77174 * 13 12 11 15 15 N 1.34770 * 119.99886 * 174.76945 * 13 12 11 16 16 C 1.46503 * 120.00137 * 184.98832 * 15 13 12 17 17 H 1.09001 * 109.63767 * 324.58390 * 16 15 13 18 18 C 1.53020 * 109.64176 * 84.99987 * 16 15 13 19 19 C 1.50067 * 110.14839 * 169.12560 * 18 16 15 20 20 C 1.29439 * 124.07659 * 342.86902 * 19 18 16 21 21 C 1.50072 * 124.07305 * 0.49391 * 20 19 18 22 22 C 1.53037 * 110.13825 * 342.82789 * 21 20 19 23 23 C 1.46931 * 118.74051 * 306.38818 * 12 11 10 24 24 C 1.53038 * 109.48742 * 59.91867 * 9 7 2 25 25 H 0.96999 * 119.99259 * 0.02562 * 1 2 3 26 26 H 1.08994 * 109.45082 * 299.96589 * 9 7 2 27 27 H 1.08998 * 109.49398 * 58.66356 * 10 9 7 28 28 H 1.08998 * 109.49500 * 298.60216 * 10 9 7 29 29 H 1.09000 * 109.58250 * 174.40543 * 11 10 9 30 30 H 1.08995 * 109.59074 * 294.83262 * 11 10 9 31 31 H 0.97002 * 120.00412 * 4.98674 * 15 13 12 32 32 H 1.09004 * 109.36079 * 289.33095 * 18 16 15 33 33 H 1.08999 * 109.35797 * 49.05154 * 18 16 15 34 34 H 1.08002 * 117.96240 * 162.84827 * 19 18 16 35 35 H 1.08000 * 117.96478 * 180.47171 * 20 19 18 36 36 H 1.08997 * 109.35992 * 103.05291 * 21 20 19 37 37 H 1.09008 * 109.35657 * 222.78196 * 21 20 19 38 38 H 1.09000 * 109.66472 * 289.77864 * 22 21 20 39 39 H 1.09000 * 109.63819 * 169.14215 * 22 21 20 40 40 H 1.08991 * 109.58845 * 173.39672 * 23 12 11 41 41 H 1.09002 * 109.58223 * 293.82502 * 23 12 11 42 42 H 1.09004 * 109.46985 * 61.39881 * 24 9 7 43 43 H 1.09007 * 109.52190 * 301.33661 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2456 -3.6623 -0.0005 11 6 1.4771 -4.9870 0.0340 12 7 0.5227 -5.0093 -1.0828 13 6 0.5122 -6.0353 -1.9568 14 8 1.3576 -6.9059 -1.8824 15 7 -0.4355 -6.0962 -2.9131 16 6 -0.5140 -7.2646 -3.7933 17 1 0.4900 -7.6343 -4.0018 18 6 -1.3366 -8.3636 -3.1173 19 6 -1.6490 -9.4540 -4.0999 20 6 -1.5576 -9.3210 -5.3842 21 6 -1.1163 -8.0610 -6.0697 22 6 -1.2079 -6.8765 -5.1050 23 6 -0.4204 -3.8921 -1.2286 24 6 0.3689 -2.5794 -1.2486 25 1 -0.4849 0.8401 -0.0004 26 1 0.6252 -2.5570 0.8900 27 1 2.8881 -3.5914 0.8771 28 1 2.8559 -3.6191 -0.9026 29 1 2.1759 -5.8175 -0.0659 30 1 0.9377 -5.0721 0.9774 31 1 -1.0657 -5.3663 -3.0186 32 1 -0.7692 -8.7793 -2.2846 33 1 -2.2684 -7.9391 -2.7433 34 1 -1.9697 -10.4092 -3.7113 35 1 -1.8145 -10.1696 -6.0008 36 1 -0.0858 -8.1745 -6.4060 37 1 -1.7588 -7.8738 -6.9302 38 1 -2.2545 -6.6421 -4.9104 39 1 -0.7102 -6.0101 -5.5404 40 1 -0.9736 -4.0002 -2.1614 41 1 -1.1145 -3.8879 -0.3881 42 1 0.9961 -2.5460 -2.1395 43 1 -0.3240 -1.7380 -1.2597 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335979060.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:14 Heat of formation + Delta-G solvation = -26.917439 kcal Electronic energy + Delta-G solvation = -22134.364690 eV Core-core repulsion = 18985.986305 eV Total energy + Delta-G solvation = -3148.378386 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.15573 -38.48094 -36.70796 -34.12918 -33.42297 -31.27549 -30.95009 -30.06641 -29.08961 -26.06853 -23.64070 -22.99075 -22.46149 -21.76092 -20.10573 -18.98098 -18.07933 -17.41533 -16.60978 -16.21799 -15.61032 -15.05541 -14.62947 -14.39407 -13.89066 -13.61919 -13.51744 -13.35271 -13.09002 -12.78921 -12.63117 -12.52715 -12.43330 -12.23676 -11.60477 -11.33757 -11.12489 -10.94036 -10.80680 -10.66551 -10.62533 -10.36410 -10.14387 -9.71442 -9.52897 -9.16301 -9.14631 -8.94082 -8.85707 -8.37904 -7.87184 -6.03553 -4.09342 2.13767 3.03750 3.27931 3.34992 3.38705 3.59010 4.22864 4.40757 4.58928 4.62167 4.83224 5.11655 5.19048 5.25554 5.29745 5.41884 5.46685 5.58814 5.66117 5.73907 5.80535 5.92811 5.95595 6.02067 6.07514 6.16250 6.21269 6.29180 6.45226 6.49385 6.69751 6.76509 6.78609 6.90031 7.01661 7.16331 7.24077 7.48921 7.67278 7.92833 8.03442 8.35437 8.40939 8.94142 8.99240 9.55692 11.01887 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.033348 B = 0.003626 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.417433 B = 7719.571885 C = 8134.716056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.511 4.511 8 H 0.055 0.945 9 C 0.050 3.950 10 C -0.124 4.124 11 C 0.129 3.871 12 N -0.619 5.619 13 C 0.706 3.294 14 O -0.605 6.605 15 N -0.748 5.748 16 C 0.165 3.835 17 H 0.089 0.911 18 C -0.105 4.105 19 C -0.144 4.144 20 C -0.164 4.164 21 C -0.086 4.086 22 C -0.129 4.129 23 C 0.111 3.889 24 C -0.123 4.123 25 H 0.260 0.740 26 H 0.027 0.973 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.079 0.921 30 H 0.057 0.943 31 H 0.396 0.604 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.056 0.944 41 H 0.061 0.939 42 H 0.038 0.962 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.124 -13.710 -8.828 17.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.549 4.549 8 H 0.073 0.927 9 C 0.031 3.969 10 C -0.162 4.162 11 C 0.007 3.993 12 N -0.355 5.355 13 C 0.408 3.592 14 O -0.485 6.485 15 N -0.405 5.405 16 C 0.059 3.941 17 H 0.107 0.893 18 C -0.143 4.143 19 C -0.163 4.163 20 C -0.182 4.182 21 C -0.123 4.123 22 C -0.167 4.167 23 C -0.012 4.012 24 C -0.162 4.162 25 H 0.070 0.930 26 H 0.045 0.955 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.097 0.903 30 H 0.075 0.925 31 H 0.233 0.767 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.057 0.943 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -5.658 -14.206 -8.735 17.610 hybrid contribution 0.016 1.297 -0.073 1.299 sum -5.642 -12.910 -8.808 16.616 Atomic orbital electron populations 1.69837 1.05836 1.26406 1.51084 1.24961 0.94879 0.99044 0.95118 0.86616 0.79932 0.83520 0.78062 1.20770 1.21271 1.19955 1.21226 0.92973 0.90603 1.50083 0.92707 1.18615 0.92643 0.91751 0.93882 1.22021 0.98908 0.94388 1.00929 1.21561 0.91228 0.99584 0.86962 1.47426 1.38193 1.20979 1.28916 1.15866 0.81556 0.82306 0.79491 1.90843 1.40379 1.41606 1.75644 1.45360 1.35841 1.22869 1.36422 1.20752 1.00074 0.85004 0.88270 0.89275 1.20910 1.00344 0.94910 0.98150 1.22024 1.00464 0.99074 0.94719 1.22031 1.01823 0.98595 0.95784 1.20395 1.01790 0.92281 0.97837 1.21904 1.01221 0.98561 0.94987 1.21882 0.91678 0.87978 0.99663 1.22015 1.00036 0.94481 0.99669 0.93025 0.95482 0.92194 0.92989 0.90294 0.92518 0.76742 0.90424 0.90702 0.87921 0.87956 0.90591 0.90733 0.91203 0.90785 0.92544 0.92072 0.94328 0.87863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.31 11.31 55.43 0.63 -23.68 16 2 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 3 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 7 C -0.51 -13.61 8.56 -34.44 -0.29 -13.90 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.05 1.18 2.06 -91.73 -0.19 0.99 16 10 C -0.12 -2.58 5.30 -26.61 -0.14 -2.72 16 11 C 0.13 2.43 6.44 -3.71 -0.02 2.40 16 12 N -0.62 -11.36 2.97 -178.51 -0.53 -11.89 16 13 C 0.71 12.85 8.26 -86.92 -0.72 12.13 16 14 O -0.60 -12.81 15.40 5.29 0.08 -12.73 16 15 N -0.75 -10.64 5.01 -58.47 -0.29 -10.93 16 16 C 0.16 2.05 2.54 -67.72 -0.17 1.87 16 17 H 0.09 1.31 7.52 -51.93 -0.39 0.92 16 18 C -0.10 -1.21 5.70 -28.18 -0.16 -1.37 16 19 C -0.14 -1.42 9.80 -35.90 -0.35 -1.77 16 20 C -0.16 -1.46 9.80 -35.90 -0.35 -1.81 16 21 C -0.09 -0.72 6.12 -28.17 -0.17 -0.89 16 22 C -0.13 -1.23 5.49 -26.51 -0.15 -1.38 16 23 C 0.11 1.96 6.39 -3.71 -0.02 1.93 16 24 C -0.12 -2.70 5.15 -26.61 -0.14 -2.84 16 25 H 0.26 6.79 8.31 -40.82 -0.34 6.46 16 26 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 28 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 29 H 0.08 1.49 7.00 -51.93 -0.36 1.13 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.40 4.96 6.09 -40.82 -0.25 4.71 16 32 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.10 0.89 8.06 -52.49 -0.42 0.47 16 35 H 0.10 0.76 8.06 -52.49 -0.42 0.34 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.52 8.14 -51.92 -0.42 0.09 16 38 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.84 5.65 -51.93 -0.29 0.54 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.10 2.50 6.04 -51.93 -0.31 2.19 16 LS Contribution 334.61 15.07 5.04 5.04 Total: -1.00 -29.46 334.61 -10.14 -39.60 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -7.07 Total: 4.60 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: -2.98 Total: -5.82 kcal Atomic # 7 Polarization: -46.31 SS G_CDS: -0.20 Total: -46.50 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.08 Total: -12.73 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.46 -10.14 -39.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335979060.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.685 kcal (2) G-P(sol) polarization free energy of solvation -29.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds