Wall clock time and date at job start Tue Mar 31 2020 00:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00444 * 2 1 4 4 H 1.48504 * 109.47095 * 270.00038 * 3 2 1 5 5 H 1.48503 * 109.46972 * 30.00098 * 3 2 1 6 6 H 1.48497 * 109.47202 * 150.00049 * 3 2 1 7 7 C 1.37881 * 119.99849 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00209 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99743 * 359.97438 * 7 2 1 10 10 C 1.53046 * 109.45898 * 180.02562 * 9 7 2 11 11 C 1.53191 * 109.33770 * 178.62909 * 10 9 7 12 12 N 1.46923 * 108.77443 * 54.62231 * 11 10 9 13 13 C 1.34783 * 120.63239 * 126.41001 * 12 11 10 14 14 O 1.21585 * 119.99662 * 354.77174 * 13 12 11 15 15 N 1.34770 * 119.99886 * 174.76945 * 13 12 11 16 16 C 1.46503 * 120.00137 * 184.98832 * 15 13 12 17 17 H 1.09001 * 109.63767 * 324.58390 * 16 15 13 18 18 C 1.53020 * 109.64176 * 84.99987 * 16 15 13 19 19 C 1.50067 * 110.14839 * 169.12560 * 18 16 15 20 20 C 1.29439 * 124.07659 * 342.86902 * 19 18 16 21 21 C 1.50072 * 124.07305 * 0.49391 * 20 19 18 22 22 C 1.53037 * 110.13825 * 342.82789 * 21 20 19 23 23 C 1.46931 * 118.74051 * 306.38818 * 12 11 10 24 24 C 1.53038 * 109.48742 * 59.91867 * 9 7 2 25 25 H 0.96999 * 119.99259 * 0.02562 * 1 2 3 26 26 H 1.08994 * 109.45082 * 299.96589 * 9 7 2 27 27 H 1.08998 * 109.49398 * 58.66356 * 10 9 7 28 28 H 1.08998 * 109.49500 * 298.60216 * 10 9 7 29 29 H 1.09000 * 109.58250 * 174.40543 * 11 10 9 30 30 H 1.08995 * 109.59074 * 294.83262 * 11 10 9 31 31 H 0.97002 * 120.00412 * 4.98674 * 15 13 12 32 32 H 1.09004 * 109.36079 * 289.33095 * 18 16 15 33 33 H 1.08999 * 109.35797 * 49.05154 * 18 16 15 34 34 H 1.08002 * 117.96240 * 162.84827 * 19 18 16 35 35 H 1.08000 * 117.96478 * 180.47171 * 20 19 18 36 36 H 1.08997 * 109.35992 * 103.05291 * 21 20 19 37 37 H 1.09008 * 109.35657 * 222.78196 * 21 20 19 38 38 H 1.09000 * 109.66472 * 289.77864 * 22 21 20 39 39 H 1.09000 * 109.63819 * 169.14215 * 22 21 20 40 40 H 1.08991 * 109.58845 * 173.39672 * 23 12 11 41 41 H 1.09002 * 109.58223 * 293.82502 * 23 12 11 42 42 H 1.09004 * 109.46985 * 61.39881 * 24 9 7 43 43 H 1.09007 * 109.52190 * 301.33661 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2456 -3.6623 -0.0005 11 6 1.4771 -4.9870 0.0340 12 7 0.5227 -5.0093 -1.0828 13 6 0.5122 -6.0353 -1.9568 14 8 1.3576 -6.9059 -1.8824 15 7 -0.4355 -6.0962 -2.9131 16 6 -0.5140 -7.2646 -3.7933 17 1 0.4900 -7.6343 -4.0018 18 6 -1.3366 -8.3636 -3.1173 19 6 -1.6490 -9.4540 -4.0999 20 6 -1.5576 -9.3210 -5.3842 21 6 -1.1163 -8.0610 -6.0697 22 6 -1.2079 -6.8765 -5.1050 23 6 -0.4204 -3.8921 -1.2286 24 6 0.3689 -2.5794 -1.2486 25 1 -0.4849 0.8401 -0.0004 26 1 0.6252 -2.5570 0.8900 27 1 2.8881 -3.5914 0.8771 28 1 2.8559 -3.6191 -0.9026 29 1 2.1759 -5.8175 -0.0659 30 1 0.9377 -5.0721 0.9774 31 1 -1.0657 -5.3663 -3.0186 32 1 -0.7692 -8.7793 -2.2846 33 1 -2.2684 -7.9391 -2.7433 34 1 -1.9697 -10.4092 -3.7113 35 1 -1.8145 -10.1696 -6.0008 36 1 -0.0858 -8.1745 -6.4060 37 1 -1.7588 -7.8738 -6.9302 38 1 -2.2545 -6.6421 -4.9104 39 1 -0.7102 -6.0101 -5.5404 40 1 -0.9736 -4.0002 -2.1614 41 1 -1.1145 -3.8879 -0.3881 42 1 0.9961 -2.5460 -2.1395 43 1 -0.3240 -1.7380 -1.2597 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335979060.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:13 Heat of formation + Delta-G solvation = -42.813280 kcal Electronic energy + Delta-G solvation = -22135.053986 eV Core-core repulsion = 18985.986305 eV Total energy + Delta-G solvation = -3149.067681 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -41.51169 -39.54147 -38.24164 -35.45860 -35.12485 -32.96986 -31.75393 -31.65880 -30.19624 -27.87317 -24.98488 -24.16619 -23.94719 -22.92684 -21.63189 -20.44679 -19.32875 -18.56480 -18.18729 -17.65103 -16.77572 -16.47023 -16.42616 -15.60345 -15.21372 -14.92213 -14.75469 -14.52650 -14.40429 -14.25098 -14.14573 -13.85649 -13.38984 -13.23168 -13.16795 -13.10554 -12.79976 -12.45769 -12.14437 -12.09163 -11.91559 -11.67317 -11.50228 -11.43783 -11.15701 -10.98863 -10.77336 -10.39072 -10.16312 -9.85745 -9.37792 -8.07164 -6.20018 1.41641 1.42542 1.43843 1.52695 1.71942 2.15025 2.44857 2.93309 3.19246 3.75740 3.83288 4.01449 4.12222 4.23081 4.29611 4.35895 4.42841 4.46566 4.49606 4.59025 4.63434 4.68452 4.74038 4.88874 4.91368 4.98113 5.00563 5.07346 5.20718 5.22148 5.25929 5.32050 5.44215 5.52284 5.58815 5.66847 5.78400 5.99882 6.05796 6.08693 6.14401 6.40774 6.88975 6.99938 7.47429 7.58274 8.96106 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.033348 B = 0.003626 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.417433 B = 7719.571885 C = 8134.716056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.018 3.982 3 Si 0.948 3.052 4 H -0.278 1.278 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.535 4.535 8 H 0.045 0.955 9 C 0.047 3.953 10 C -0.114 4.114 11 C 0.135 3.865 12 N -0.623 5.623 13 C 0.703 3.297 14 O -0.637 6.637 15 N -0.733 5.733 16 C 0.161 3.839 17 H 0.063 0.937 18 C -0.099 4.099 19 C -0.163 4.163 20 C -0.156 4.156 21 C -0.088 4.088 22 C -0.122 4.122 23 C 0.121 3.879 24 C -0.114 4.114 25 H 0.262 0.738 26 H 0.005 0.995 27 H 0.064 0.936 28 H 0.038 0.962 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.406 0.594 32 H 0.051 0.949 33 H 0.081 0.919 34 H 0.113 0.887 35 H 0.122 0.878 36 H 0.076 0.924 37 H 0.097 0.903 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.090 0.910 41 H 0.067 0.933 42 H 0.024 0.976 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.215 -14.139 -10.200 18.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.181 4.181 3 Si 0.774 3.226 4 H -0.204 1.204 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.573 4.573 8 H 0.064 0.936 9 C 0.028 3.972 10 C -0.152 4.152 11 C 0.012 3.988 12 N -0.358 5.358 13 C 0.405 3.595 14 O -0.520 6.520 15 N -0.390 5.390 16 C 0.056 3.944 17 H 0.082 0.918 18 C -0.137 4.137 19 C -0.181 4.181 20 C -0.174 4.174 21 C -0.125 4.125 22 C -0.160 4.160 23 C -0.001 4.001 24 C -0.153 4.153 25 H 0.071 0.929 26 H 0.023 0.977 27 H 0.082 0.918 28 H 0.057 0.943 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.245 0.755 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.131 0.869 35 H 0.140 0.860 36 H 0.094 0.906 37 H 0.115 0.885 38 H 0.101 0.899 39 H 0.095 0.905 40 H 0.108 0.892 41 H 0.086 0.914 42 H 0.043 0.957 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.776 -14.637 -10.128 19.045 hybrid contribution 0.373 1.423 0.334 1.509 sum -6.403 -13.213 -9.795 17.650 Atomic orbital electron populations 1.69939 1.06723 1.27105 1.51234 1.25617 0.95722 1.01855 0.94861 0.85712 0.78770 0.79990 0.78087 1.20355 1.20768 1.19856 1.21549 0.92866 0.92331 1.50574 0.93628 1.18587 0.93019 0.91818 0.93753 1.21869 0.98337 0.94561 1.00447 1.21451 0.91414 0.98039 0.87900 1.47419 1.38222 1.21267 1.28935 1.16025 0.81880 0.81772 0.79873 1.90820 1.41876 1.42736 1.76526 1.45315 1.34754 1.23679 1.35300 1.20902 0.99357 0.84644 0.89500 0.91828 1.20794 0.99925 0.95141 0.97849 1.22027 1.02144 0.99052 0.94891 1.22275 1.00143 0.99336 0.95605 1.20476 1.02399 0.91465 0.98150 1.21891 1.01508 0.99242 0.93363 1.21761 0.91004 0.85551 1.01778 1.21780 0.99356 0.96125 0.97999 0.92912 0.97672 0.91786 0.94315 0.90367 0.91206 0.75529 0.92982 0.90100 0.86907 0.86018 0.90551 0.88450 0.89872 0.90542 0.89205 0.91423 0.95676 0.90088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.82 11.31 21.45 0.24 -49.57 16 2 C 0.02 0.99 5.30 84.66 0.45 1.44 16 3 Si 0.95 42.76 29.54 68.60 2.03 44.78 16 4 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.54 -28.94 8.56 25.60 0.22 -28.72 16 8 H 0.05 2.48 7.74 -2.91 -0.02 2.46 16 9 C 0.05 2.25 2.06 -11.51 -0.02 2.23 16 10 C -0.11 -4.77 5.30 30.67 0.16 -4.61 16 11 C 0.14 5.02 6.44 86.36 0.56 5.58 16 12 N -0.62 -22.37 2.97 -836.93 -2.49 -24.85 16 13 C 0.70 25.12 8.26 179.05 1.48 26.60 16 14 O -0.64 -27.08 15.40 -3.98 -0.06 -27.14 16 15 N -0.73 -19.89 5.01 -457.16 -2.29 -22.18 16 16 C 0.16 3.82 2.54 45.13 0.11 3.94 16 17 H 0.06 1.86 7.52 -2.39 -0.02 1.84 16 18 C -0.10 -2.19 5.70 29.66 0.17 -2.02 16 19 C -0.16 -2.93 9.80 27.04 0.27 -2.66 16 20 C -0.16 -2.36 9.80 27.04 0.27 -2.09 16 21 C -0.09 -1.22 6.12 29.66 0.18 -1.04 16 22 C -0.12 -2.04 5.49 30.74 0.17 -1.87 16 23 C 0.12 4.15 6.39 86.36 0.55 4.70 16 24 C -0.11 -5.00 5.15 30.67 0.16 -4.84 16 25 H 0.26 13.65 8.31 -92.71 -0.77 12.88 16 26 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 27 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 28 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.08 2.94 7.00 -2.39 -0.02 2.93 16 30 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 31 H 0.41 9.22 6.09 -92.71 -0.56 8.66 16 32 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 33 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.11 1.77 8.06 -2.91 -0.02 1.75 16 35 H 0.12 1.40 8.06 -2.91 -0.02 1.38 16 36 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 38 H 0.08 1.20 8.12 -2.39 -0.02 1.18 16 39 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.09 2.45 5.65 -2.39 -0.01 2.44 16 41 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.08 3.95 6.04 -2.38 -0.01 3.94 16 Total: -1.00 -63.70 334.61 2.57 -61.13 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: 0.42 Total: 21.19 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: 4.72 Total: -3.36 kcal Atomic # 7 Polarization: -92.07 SS G_CDS: -4.53 Total: -96.60 kcal Atomic # 8 Polarization: -27.08 SS G_CDS: -0.06 Total: -27.14 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Total: -63.70 2.57 -61.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335979060.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.320 kcal (2) G-P(sol) polarization free energy of solvation -63.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds