Wall clock time and date at job start Tue Mar 31 2020 00:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86799 * 120.00263 * 2 1 4 4 H 1.48499 * 109.47086 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46894 * 299.99859 * 3 2 1 6 6 H 1.48501 * 109.47097 * 59.99760 * 3 2 1 7 7 C 1.40049 * 119.99810 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00334 * 180.02562 * 7 2 1 9 9 C 1.46372 * 120.00286 * 359.97438 * 7 2 1 10 10 O 1.21690 * 119.99834 * 5.49434 * 9 7 2 11 11 N 1.34773 * 120.00435 * 185.49072 * 9 7 2 12 12 C 1.46940 * 120.67916 * 354.74799 * 11 9 7 13 13 C 1.53160 * 108.70221 * 126.14865 * 12 11 9 14 14 C 1.53100 * 109.40061 * 54.95529 * 13 12 11 15 15 H 1.09003 * 109.57173 * 59.47279 * 14 13 12 16 16 C 1.53084 * 109.54050 * 298.87439 * 14 13 12 17 17 H 1.08994 * 109.45580 * 180.76570 * 16 14 13 18 18 C 1.53058 * 109.22917 * 300.52250 * 16 14 13 19 19 C 1.53160 * 109.05413 * 301.93429 * 18 16 14 20 20 C 1.53006 * 109.33211 * 57.43450 * 19 18 16 21 21 N 1.46859 * 109.64754 * 301.10234 * 20 19 18 22 22 C 1.46896 * 111.00121 * 185.82458 * 21 20 19 23 23 C 1.52999 * 117.50247 * 124.63738 * 22 21 20 24 24 C 1.53001 * 117.50406 * 56.00918 * 22 21 20 25 25 C 1.46910 * 120.68409 * 174.77079 * 11 9 7 26 26 H 0.97000 * 119.99699 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.60101 * 245.91500 * 12 11 9 28 28 H 1.08999 * 109.60054 * 6.37939 * 12 11 9 29 29 H 1.09001 * 109.48653 * 174.93687 * 13 12 11 30 30 H 1.09003 * 109.48339 * 294.96392 * 13 12 11 31 31 H 1.09004 * 109.53480 * 182.06307 * 18 16 14 32 32 H 1.08994 * 109.61111 * 61.85537 * 18 16 14 33 33 H 1.09005 * 109.48987 * 297.47709 * 19 18 16 34 34 H 1.08996 * 109.51771 * 177.40475 * 19 18 16 35 35 H 1.09004 * 109.44032 * 181.05514 * 20 19 18 36 36 H 1.08998 * 109.44519 * 61.16099 * 20 19 18 37 37 H 1.09007 * 115.54887 * 270.34139 * 22 21 20 38 38 H 1.09003 * 117.49481 * 359.97438 * 23 22 21 39 39 H 1.08996 * 117.50151 * 145.01791 * 23 22 21 40 40 H 1.08999 * 117.50118 * 214.98338 * 24 22 21 41 41 H 1.09003 * 117.49314 * 359.97438 * 24 22 21 42 42 H 1.09006 * 109.55343 * 353.28696 * 25 11 9 43 43 H 1.08997 * 109.55960 * 113.59844 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7008 1.3463 0.0006 5 1 1.8821 2.3963 -1.2125 6 1 1.8821 2.3964 1.2125 7 6 2.0069 -1.2129 -0.0005 8 1 3.0870 -1.2130 -0.0001 9 6 1.2751 -2.4805 -0.0005 10 8 0.0624 -2.4829 -0.1010 11 7 1.9443 -3.6451 0.1106 12 6 3.4135 -3.6678 0.1172 13 6 3.8875 -4.4181 1.3656 14 6 3.2434 -5.8066 1.3995 15 1 3.5244 -6.3615 0.5044 16 6 1.7207 -5.6632 1.4663 17 1 1.2642 -6.6522 1.5041 18 6 1.3428 -4.8803 2.7260 19 6 1.8888 -5.6151 3.9539 20 6 3.4042 -5.7749 3.8163 21 7 3.7124 -6.5263 2.5926 22 6 5.1494 -6.8169 2.5011 23 6 5.5652 -8.2800 2.3361 24 6 5.7947 -7.5651 3.6693 25 6 1.2199 -4.9178 0.2271 26 1 -0.4850 0.8401 -0.0004 27 1 3.7754 -4.1781 -0.7754 28 1 3.7949 -2.6470 0.1373 29 1 4.9722 -4.5211 1.3379 30 1 3.5978 -3.8608 2.2565 31 1 0.2576 -4.8068 2.7977 32 1 1.7735 -3.8802 2.6781 33 1 1.4243 -6.5986 4.0256 34 1 1.6638 -5.0402 4.8522 35 1 3.7921 -6.3142 4.6805 36 1 3.8697 -4.7907 3.7646 37 1 5.7503 -6.0623 1.9934 38 1 4.7724 -9.0270 2.2959 39 1 6.4397 -8.4883 1.7197 40 1 6.8202 -7.3031 3.9299 41 1 5.1530 -7.8414 4.5060 42 1 0.1521 -4.7221 0.3258 43 1 1.4009 -5.5233 -0.6609 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336527676.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:31 Heat of formation + Delta-G solvation = -3.021726 kcal Electronic energy + Delta-G solvation = -23172.153048 eV Core-core repulsion = 20024.810858 eV Total energy + Delta-G solvation = -3147.342190 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.27894 -37.76272 -36.27171 -34.20346 -32.64456 -32.20786 -30.77233 -29.43781 -26.63147 -24.81289 -23.56702 -22.70173 -22.50112 -21.57911 -20.36584 -19.36423 -17.65511 -16.72502 -16.55760 -15.72463 -15.18892 -14.99880 -14.38503 -14.25433 -14.08670 -13.58566 -13.42011 -13.06951 -12.68383 -12.66079 -12.39282 -12.27921 -11.70461 -11.57878 -11.46395 -11.20700 -10.99030 -10.93249 -10.90459 -10.68121 -10.56295 -10.27816 -10.22699 -10.06457 -9.93455 -9.82827 -9.66125 -8.86796 -8.07733 -7.55866 -7.18097 -6.20275 -4.64658 3.11055 3.19562 3.23180 3.71717 3.85062 4.07901 4.56023 4.59264 4.86892 4.87692 4.95721 5.05732 5.17339 5.29051 5.32707 5.44568 5.53619 5.59326 5.59986 5.70080 5.74194 5.78055 5.84740 5.93756 5.99685 6.04885 6.10365 6.17514 6.24355 6.25638 6.33263 6.44430 6.51001 6.53867 6.67654 6.70361 6.91931 7.23081 7.29531 7.45281 7.64905 8.14853 8.36959 9.02107 9.45410 10.57857 10.76815 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.025440 B = 0.005012 C = 0.004744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.355478 B = 5585.493476 C = 5900.597591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.904 3.096 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.545 4.545 8 H 0.072 0.928 9 C 0.561 3.439 10 O -0.578 6.578 11 N -0.639 5.639 12 C 0.127 3.873 13 C -0.168 4.168 14 C 0.099 3.901 15 H 0.078 0.922 16 C -0.087 4.087 17 H 0.073 0.927 18 C -0.113 4.113 19 C -0.114 4.114 20 C 0.055 3.945 21 N -0.506 5.506 22 C 0.007 3.993 23 C -0.165 4.165 24 C -0.178 4.178 25 C 0.125 3.875 26 H 0.267 0.733 27 H 0.040 0.960 28 H 0.092 0.908 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.039 0.961 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.096 0.904 42 H 0.085 0.915 43 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.437 -11.938 6.404 17.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.131 4.131 3 Si 0.729 3.271 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.582 4.582 8 H 0.090 0.910 9 C 0.367 3.633 10 O -0.460 6.460 11 N -0.377 5.377 12 C 0.002 3.998 13 C -0.208 4.208 14 C -0.009 4.009 15 H 0.096 0.904 16 C -0.107 4.107 17 H 0.092 0.908 18 C -0.151 4.151 19 C -0.152 4.152 20 C -0.073 4.073 21 N -0.228 5.228 22 C -0.102 4.102 23 C -0.203 4.203 24 C -0.216 4.216 25 C 0.000 4.000 26 H 0.078 0.922 27 H 0.058 0.942 28 H 0.110 0.890 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.057 0.943 37 H 0.109 0.891 38 H 0.116 0.884 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.114 0.886 42 H 0.104 0.896 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 9.312 -12.271 6.379 16.673 hybrid contribution 1.072 1.517 0.003 1.858 sum 10.384 -10.754 6.382 16.254 Atomic orbital electron populations 1.70025 1.07021 1.27115 1.35488 1.25711 0.94578 1.00213 0.92610 0.86377 0.80508 0.82012 0.78248 1.18811 1.20133 1.20195 1.21011 0.93528 0.89343 1.54298 0.91006 1.18207 0.86854 0.82174 0.76061 1.90591 1.14455 1.86133 1.54834 1.48136 1.04469 1.05927 1.79164 1.21317 0.82806 1.01174 0.94538 1.22661 0.99225 0.97726 1.01168 1.21666 0.95079 0.92140 0.92017 0.90357 1.21471 0.93987 0.99021 0.96229 0.90818 1.21584 1.00754 0.99657 0.93084 1.21588 0.94635 1.00660 0.98337 1.22076 0.96566 0.96577 0.92063 1.62078 1.12039 1.46065 1.02665 1.22450 0.89652 0.95046 1.03081 1.23026 1.02594 0.95441 0.99205 1.23021 1.01113 1.04795 0.92667 1.21125 0.98601 0.85849 0.94381 0.92191 0.94209 0.88981 0.92378 0.90815 0.92060 0.90895 0.91772 0.91949 0.91449 0.94266 0.89083 0.88379 0.89110 0.89031 0.88568 0.89643 0.94114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.84 11.84 55.55 0.66 -22.19 16 2 C 0.09 2.44 5.50 -17.37 -0.10 2.35 16 3 Si 0.90 19.96 29.56 -169.99 -5.02 14.94 16 4 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 6 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 7 C -0.55 -15.11 8.88 -35.63 -0.32 -15.43 16 8 H 0.07 1.83 5.64 -52.48 -0.30 1.53 16 9 C 0.56 15.76 7.62 -12.99 -0.10 15.66 16 10 O -0.58 -18.52 14.48 5.20 0.08 -18.45 16 11 N -0.64 -14.27 2.42 -174.55 -0.42 -14.69 16 12 C 0.13 2.35 6.35 -3.72 -0.02 2.32 16 13 C -0.17 -2.61 4.37 -26.60 -0.12 -2.73 16 14 C 0.10 1.45 2.23 -67.55 -0.15 1.30 16 15 H 0.08 1.15 8.12 -51.93 -0.42 0.73 16 16 C -0.09 -1.41 2.59 -90.53 -0.23 -1.65 16 17 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 18 C -0.11 -1.90 4.89 -26.62 -0.13 -2.03 16 19 C -0.11 -1.56 6.09 -26.65 -0.16 -1.72 16 20 C 0.05 0.71 5.03 -3.84 -0.02 0.69 16 21 N -0.51 -6.63 4.76 -218.54 -1.04 -7.67 16 22 C 0.01 0.08 5.03 -67.71 -0.34 -0.27 16 23 C -0.16 -1.63 10.46 -26.73 -0.28 -1.91 16 24 C -0.18 -1.71 9.70 -26.73 -0.26 -1.97 16 25 C 0.13 2.45 5.81 -3.80 -0.02 2.43 16 26 H 0.27 7.22 8.29 -40.82 -0.34 6.88 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.09 1.81 5.31 -51.93 -0.28 1.54 16 29 H 0.06 0.80 6.39 -51.93 -0.33 0.47 16 30 H 0.07 1.26 4.70 -51.93 -0.24 1.02 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.07 1.44 6.08 -51.93 -0.32 1.12 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.78 6.69 -51.93 -0.35 0.43 16 36 H 0.04 0.55 6.14 -51.93 -0.32 0.23 16 37 H 0.09 1.06 6.34 -51.92 -0.33 0.73 16 38 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.10 0.93 7.24 -51.93 -0.38 0.56 16 42 H 0.09 1.89 7.04 -51.93 -0.37 1.53 16 43 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 320.20 15.07 4.83 4.83 Total: -1.00 -32.07 320.20 -9.74 -41.81 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -6.56 Total: 4.37 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: -2.25 Total: -2.95 kcal Atomic # 7 Polarization: -43.75 SS G_CDS: -0.81 Total: -44.55 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: 0.08 Total: -18.45 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.07 -9.74 -41.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336527676.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.790 kcal (2) G-P(sol) polarization free energy of solvation -32.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds