Wall clock time and date at job start Tue Mar 31 2020 00:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86799 * 120.00263 * 2 1 4 4 H 1.48499 * 109.47086 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46894 * 299.99859 * 3 2 1 6 6 H 1.48501 * 109.47097 * 59.99760 * 3 2 1 7 7 C 1.40049 * 119.99810 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00334 * 180.02562 * 7 2 1 9 9 C 1.46372 * 120.00286 * 359.97438 * 7 2 1 10 10 O 1.21690 * 119.99834 * 5.49434 * 9 7 2 11 11 N 1.34773 * 120.00435 * 185.49072 * 9 7 2 12 12 C 1.46940 * 120.67916 * 354.74799 * 11 9 7 13 13 C 1.53160 * 108.70221 * 126.14865 * 12 11 9 14 14 C 1.53100 * 109.40061 * 54.95529 * 13 12 11 15 15 H 1.09003 * 109.57173 * 59.47279 * 14 13 12 16 16 C 1.53084 * 109.54050 * 298.87439 * 14 13 12 17 17 H 1.08994 * 109.45580 * 180.76570 * 16 14 13 18 18 C 1.53058 * 109.22917 * 300.52250 * 16 14 13 19 19 C 1.53160 * 109.05413 * 301.93429 * 18 16 14 20 20 C 1.53006 * 109.33211 * 57.43450 * 19 18 16 21 21 N 1.46859 * 109.64754 * 301.10234 * 20 19 18 22 22 C 1.46896 * 111.00121 * 185.82458 * 21 20 19 23 23 C 1.52999 * 117.50247 * 124.63738 * 22 21 20 24 24 C 1.53001 * 117.50406 * 56.00918 * 22 21 20 25 25 C 1.46910 * 120.68409 * 174.77079 * 11 9 7 26 26 H 0.97000 * 119.99699 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.60101 * 245.91500 * 12 11 9 28 28 H 1.08999 * 109.60054 * 6.37939 * 12 11 9 29 29 H 1.09001 * 109.48653 * 174.93687 * 13 12 11 30 30 H 1.09003 * 109.48339 * 294.96392 * 13 12 11 31 31 H 1.09004 * 109.53480 * 182.06307 * 18 16 14 32 32 H 1.08994 * 109.61111 * 61.85537 * 18 16 14 33 33 H 1.09005 * 109.48987 * 297.47709 * 19 18 16 34 34 H 1.08996 * 109.51771 * 177.40475 * 19 18 16 35 35 H 1.09004 * 109.44032 * 181.05514 * 20 19 18 36 36 H 1.08998 * 109.44519 * 61.16099 * 20 19 18 37 37 H 1.09007 * 115.54887 * 270.34139 * 22 21 20 38 38 H 1.09003 * 117.49481 * 359.97438 * 23 22 21 39 39 H 1.08996 * 117.50151 * 145.01791 * 23 22 21 40 40 H 1.08999 * 117.50118 * 214.98338 * 24 22 21 41 41 H 1.09003 * 117.49314 * 359.97438 * 24 22 21 42 42 H 1.09006 * 109.55343 * 353.28696 * 25 11 9 43 43 H 1.08997 * 109.55960 * 113.59844 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7008 1.3463 0.0006 5 1 1.8821 2.3963 -1.2125 6 1 1.8821 2.3964 1.2125 7 6 2.0069 -1.2129 -0.0005 8 1 3.0870 -1.2130 -0.0001 9 6 1.2751 -2.4805 -0.0005 10 8 0.0624 -2.4829 -0.1010 11 7 1.9443 -3.6451 0.1106 12 6 3.4135 -3.6678 0.1172 13 6 3.8875 -4.4181 1.3656 14 6 3.2434 -5.8066 1.3995 15 1 3.5244 -6.3615 0.5044 16 6 1.7207 -5.6632 1.4663 17 1 1.2642 -6.6522 1.5041 18 6 1.3428 -4.8803 2.7260 19 6 1.8888 -5.6151 3.9539 20 6 3.4042 -5.7749 3.8163 21 7 3.7124 -6.5263 2.5926 22 6 5.1494 -6.8169 2.5011 23 6 5.5652 -8.2800 2.3361 24 6 5.7947 -7.5651 3.6693 25 6 1.2199 -4.9178 0.2271 26 1 -0.4850 0.8401 -0.0004 27 1 3.7754 -4.1781 -0.7754 28 1 3.7949 -2.6470 0.1373 29 1 4.9722 -4.5211 1.3379 30 1 3.5978 -3.8608 2.2565 31 1 0.2576 -4.8068 2.7977 32 1 1.7735 -3.8802 2.6781 33 1 1.4243 -6.5986 4.0256 34 1 1.6638 -5.0402 4.8522 35 1 3.7921 -6.3142 4.6805 36 1 3.8697 -4.7907 3.7646 37 1 5.7503 -6.0623 1.9934 38 1 4.7724 -9.0270 2.2959 39 1 6.4397 -8.4883 1.7197 40 1 6.8202 -7.3031 3.9299 41 1 5.1530 -7.8414 4.5060 42 1 0.1521 -4.7221 0.3258 43 1 1.4009 -5.5233 -0.6609 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336527676.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:31 Heat of formation + Delta-G solvation = -23.880337 kcal Electronic energy + Delta-G solvation = -23173.057545 eV Core-core repulsion = 20024.810858 eV Total energy + Delta-G solvation = -3148.246687 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.04 seconds Orbital eigenvalues (eV) -41.57477 -39.35381 -37.62837 -35.77917 -34.67525 -33.54999 -32.23074 -30.83280 -28.61077 -26.31341 -24.88028 -24.04480 -23.54692 -22.62133 -21.80592 -20.80416 -19.15619 -18.29945 -17.91244 -17.48991 -16.55882 -16.31994 -15.94808 -15.77208 -15.54484 -14.88636 -14.76548 -14.39331 -14.19930 -14.06039 -13.92015 -13.50927 -13.25298 -13.15549 -12.92238 -12.75688 -12.48965 -12.40851 -12.25997 -12.11906 -11.98237 -11.70073 -11.63084 -11.34901 -11.13042 -10.96664 -10.94829 -10.89763 -9.76661 -9.13395 -9.02815 -8.29081 -6.83072 1.37627 1.38123 1.55218 2.22397 2.46706 2.79467 2.87161 2.97981 3.60031 3.65666 3.83811 3.96829 4.07910 4.08954 4.16595 4.24890 4.26293 4.31553 4.38438 4.53969 4.58143 4.64292 4.73133 4.81654 4.82793 4.87888 4.92551 4.94806 4.97365 5.06111 5.10536 5.13778 5.17974 5.25652 5.34163 5.39560 5.39978 5.55933 5.79004 6.13267 6.15263 6.29243 6.43520 6.88528 7.45033 8.48808 8.68396 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.025440 B = 0.005012 C = 0.004744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.355478 B = 5585.493476 C = 5900.597591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.030 3.970 3 Si 0.992 3.008 4 H -0.246 1.246 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.569 4.569 8 H 0.091 0.909 9 C 0.545 3.455 10 O -0.633 6.633 11 N -0.639 5.639 12 C 0.123 3.877 13 C -0.155 4.155 14 C 0.108 3.892 15 H 0.087 0.913 16 C -0.078 4.078 17 H 0.090 0.910 18 C -0.110 4.110 19 C -0.106 4.106 20 C 0.057 3.943 21 N -0.503 5.503 22 C -0.014 4.014 23 C -0.157 4.157 24 C -0.166 4.166 25 C 0.124 3.876 26 H 0.273 0.727 27 H 0.061 0.939 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.056 0.944 31 H 0.039 0.961 32 H 0.038 0.962 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.029 0.971 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.096 0.904 42 H 0.048 0.952 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.720 -12.981 7.224 20.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.185 4.185 3 Si 0.812 3.188 4 H -0.169 1.169 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.606 4.606 8 H 0.109 0.891 9 C 0.350 3.650 10 O -0.520 6.520 11 N -0.375 5.375 12 C -0.001 4.001 13 C -0.195 4.195 14 C 0.000 4.000 15 H 0.105 0.895 16 C -0.098 4.098 17 H 0.108 0.892 18 C -0.148 4.148 19 C -0.144 4.144 20 C -0.070 4.070 21 N -0.226 5.226 22 C -0.123 4.123 23 C -0.195 4.195 24 C -0.203 4.203 25 C 0.000 4.000 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.096 0.904 29 H 0.104 0.896 30 H 0.074 0.926 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.107 0.893 36 H 0.047 0.953 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.124 0.876 40 H 0.125 0.875 41 H 0.115 0.885 42 H 0.067 0.933 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 12.655 -13.372 7.209 19.772 hybrid contribution 0.043 1.744 -0.260 1.764 sum 12.698 -11.628 6.949 18.568 Atomic orbital electron populations 1.70203 1.09508 1.28694 1.36875 1.26951 0.95449 1.04820 0.91268 0.85052 0.79504 0.75773 0.78499 1.16862 1.19419 1.19440 1.21519 0.94658 0.89914 1.54470 0.89083 1.18584 0.86461 0.84127 0.75778 1.90538 1.16746 1.87430 1.57327 1.47964 1.06279 1.05401 1.77831 1.21500 0.80179 1.01308 0.97109 1.22533 1.00791 0.97597 0.98558 1.21498 0.93285 0.91815 0.93424 0.89453 1.21367 0.95765 0.98795 0.93859 0.89209 1.21499 0.99300 0.98525 0.95442 1.21533 0.95449 1.00686 0.96738 1.22076 0.95565 0.96443 0.92916 1.62060 1.13693 1.45142 1.01712 1.22528 0.88361 0.96114 1.05255 1.23077 1.02835 0.94002 0.99609 1.23096 1.01705 1.03292 0.92254 1.21229 0.96510 0.85251 0.97059 0.91736 0.92072 0.90361 0.89649 0.92587 0.94227 0.94336 0.90658 0.91160 0.89300 0.95317 0.89024 0.88884 0.87613 0.87469 0.88533 0.93310 0.92336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.04 11.84 21.84 0.26 -50.78 16 2 C 0.03 1.68 5.50 85.30 0.47 2.15 16 3 Si 0.99 41.26 29.56 68.60 2.03 43.29 16 4 H -0.25 -9.37 7.11 99.48 0.71 -8.67 16 5 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 6 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 7 C -0.57 -32.40 8.88 24.83 0.22 -32.18 16 8 H 0.09 4.65 5.64 -2.91 -0.02 4.64 16 9 C 0.54 32.07 7.62 86.36 0.66 32.73 16 10 O -0.63 -43.26 14.48 -4.32 -0.06 -43.32 16 11 N -0.64 -29.40 2.42 -824.38 -2.00 -31.40 16 12 C 0.12 4.47 6.35 86.35 0.55 5.02 16 13 C -0.16 -4.59 4.37 30.68 0.13 -4.46 16 14 C 0.11 2.96 2.23 44.95 0.10 3.06 16 15 H 0.09 2.30 8.12 -2.39 -0.02 2.28 16 16 C -0.08 -2.51 2.59 -10.74 -0.03 -2.54 16 17 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 18 C -0.11 -3.79 4.89 30.67 0.15 -3.64 16 19 C -0.11 -2.77 6.09 30.65 0.19 -2.59 16 20 C 0.06 1.35 5.03 86.31 0.43 1.78 16 21 N -0.50 -11.79 4.76 -845.34 -4.02 -15.81 16 22 C -0.01 -0.27 5.03 44.92 0.23 -0.05 16 23 C -0.16 -2.51 10.46 30.60 0.32 -2.19 16 24 C -0.17 -2.53 9.70 30.60 0.30 -2.23 16 25 C 0.12 5.00 5.81 86.31 0.50 5.50 16 26 H 0.27 15.32 8.29 -92.71 -0.77 14.55 16 27 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.08 3.06 5.31 -2.39 -0.01 3.04 16 29 H 0.09 2.09 6.39 -2.39 -0.02 2.08 16 30 H 0.06 1.89 4.70 -2.39 -0.01 1.88 16 31 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 32 H 0.04 1.58 6.08 -2.39 -0.01 1.57 16 33 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 34 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.09 1.75 6.69 -2.39 -0.02 1.74 16 36 H 0.03 0.75 6.14 -2.39 -0.01 0.73 16 37 H 0.09 1.79 6.34 -2.38 -0.02 1.77 16 38 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.10 1.49 7.24 -2.39 -0.02 1.48 16 42 H 0.05 2.32 7.04 -2.38 -0.02 2.30 16 43 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -74.00 320.20 1.43 -72.57 By element: Atomic # 1 Polarization: 24.07 SS G_CDS: 1.01 Total: 25.08 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: 4.22 Total: 0.37 kcal Atomic # 7 Polarization: -92.23 SS G_CDS: -5.76 Total: -97.99 kcal Atomic # 8 Polarization: -43.26 SS G_CDS: -0.06 Total: -43.32 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.29 kcal Total: -74.00 1.43 -72.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336527676.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.690 kcal (2) G-P(sol) polarization free energy of solvation -73.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.04 seconds