Wall clock time and date at job start Tue Mar 31 2020 00:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86793 * 120.00247 * 2 1 4 4 H 1.48495 * 109.47465 * 269.99999 * 3 2 1 5 5 H 1.48500 * 109.47143 * 29.99995 * 3 2 1 6 6 H 1.48495 * 109.47245 * 149.99754 * 3 2 1 7 7 C 1.40051 * 119.99992 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00371 * 158.85977 * 7 2 1 9 9 C 1.46382 * 119.99754 * 338.86243 * 7 2 1 10 10 O 1.21689 * 119.99935 * 340.98860 * 9 7 2 11 11 N 1.34775 * 119.99678 * 160.99114 * 9 7 2 12 12 C 1.46942 * 120.68449 * 354.82689 * 11 9 7 13 13 C 1.52717 * 108.93773 * 233.85207 * 12 11 9 14 14 C 1.53102 * 109.48392 * 305.27929 * 13 12 11 15 15 H 1.09002 * 109.87177 * 300.57024 * 14 13 12 16 16 C 1.53083 * 109.54240 * 60.98265 * 14 13 12 17 17 H 1.08994 * 109.45397 * 179.24517 * 16 14 13 18 18 C 1.53057 * 109.18106 * 59.45193 * 16 14 13 19 19 C 1.53163 * 109.05480 * 58.15897 * 18 16 14 20 20 C 1.53012 * 109.27500 * 302.46563 * 19 18 16 21 21 N 1.46850 * 109.64613 * 58.94035 * 20 19 18 22 22 C 1.46905 * 111.00465 * 174.17166 * 21 20 19 23 23 C 1.53006 * 117.49458 * 7.73582 * 22 21 20 24 24 C 1.53008 * 117.49431 * 299.08027 * 22 21 20 25 25 C 1.46915 * 120.68134 * 175.10906 * 11 9 7 26 26 H 0.97001 * 120.00186 * 174.20330 * 1 2 3 27 27 H 1.08991 * 109.59716 * 353.67060 * 12 11 9 28 28 H 1.09005 * 109.59396 * 114.13759 * 12 11 9 29 29 H 1.08992 * 109.54954 * 185.20874 * 13 12 11 30 30 H 1.09008 * 109.34165 * 65.21559 * 13 12 11 31 31 H 1.08998 * 109.54278 * 177.96225 * 18 16 14 32 32 H 1.08999 * 109.54306 * 298.22059 * 18 16 14 33 33 H 1.08998 * 109.49085 * 182.54525 * 19 18 16 34 34 H 1.08996 * 109.57296 * 62.43735 * 19 18 16 35 35 H 1.08996 * 109.44614 * 298.87930 * 20 19 18 36 36 H 1.09009 * 109.44179 * 178.99327 * 20 19 18 37 37 H 1.08997 * 115.55151 * 153.40849 * 22 21 20 38 38 H 1.09002 * 117.49612 * 0.02562 * 23 22 21 39 39 H 1.09001 * 117.49414 * 145.02325 * 23 22 21 40 40 H 1.09000 * 117.49382 * 214.97813 * 24 22 21 41 41 H 1.08992 * 117.49774 * 359.97212 * 24 22 21 42 42 H 1.08998 * 109.55861 * 246.33893 * 25 11 9 43 43 H 1.09006 * 109.55470 * 6.55317 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 2.4883 2.0464 -1.4000 5 1 1.4383 2.6526 0.7000 6 1 3.5382 1.4401 0.7001 7 6 2.0070 -1.2129 0.0005 8 1 3.0324 -1.2446 -0.3367 9 6 1.3489 -2.4377 0.4582 10 8 0.3487 -2.3697 1.1481 11 7 1.8508 -3.6407 0.1157 12 6 2.9892 -3.7428 -0.8078 13 6 2.6136 -4.6768 -1.9562 14 6 2.1485 -6.0211 -1.3899 15 1 2.9458 -6.4692 -0.7970 16 6 0.9140 -5.8066 -0.5103 17 1 0.5762 -6.7661 -0.1188 18 6 -0.1998 -5.1786 -1.3515 19 6 -0.5122 -6.0992 -2.5350 20 6 0.7617 -6.3198 -3.3533 21 7 1.7983 -6.9170 -2.5017 22 6 2.9878 -7.2692 -3.2886 23 6 3.0309 -6.8105 -4.7476 24 6 2.8127 -8.2889 -4.4158 25 6 1.2670 -4.8772 0.6530 26 1 -0.4850 -0.8357 -0.0848 27 1 3.2281 -2.7560 -1.2041 28 1 3.8532 -4.1464 -0.2797 29 1 3.4807 -4.8331 -2.5978 30 1 1.8074 -4.2287 -2.5371 31 1 -1.0938 -5.0566 -0.7400 32 1 0.1263 -4.2063 -1.7208 33 1 -1.2732 -5.6373 -3.1641 34 1 -0.8779 -7.0573 -2.1658 35 1 1.1154 -5.3637 -3.7390 36 1 0.5465 -6.9891 -4.1864 37 1 3.9283 -7.2844 -2.7378 38 1 2.1767 -6.2472 -5.1234 39 1 3.9998 -6.5244 -5.1568 40 1 3.6381 -8.9747 -4.6068 41 1 1.8151 -8.6987 -4.5731 42 1 1.9888 -5.3677 1.3060 43 1 0.3659 -4.6395 1.2185 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336527678.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:34 Heat of formation + Delta-G solvation = -14.408572 kcal Electronic energy + Delta-G solvation = -23350.472068 eV Core-core repulsion = 20202.636107 eV Total energy + Delta-G solvation = -3147.835961 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.52275 -38.09664 -36.44248 -34.30700 -32.65012 -32.15294 -30.86494 -29.54919 -26.40273 -24.86694 -23.55300 -22.72998 -22.59500 -21.88890 -20.33130 -19.41450 -17.96352 -17.04759 -16.73656 -15.72689 -15.07986 -15.01858 -14.57342 -14.30034 -13.83360 -13.56304 -13.48565 -13.31895 -12.93945 -12.71023 -12.38967 -12.17060 -11.77012 -11.73366 -11.54618 -11.33851 -11.10687 -10.93453 -10.85312 -10.75796 -10.56075 -10.45202 -10.24639 -10.10062 -9.99759 -9.92738 -9.74117 -8.73350 -8.03389 -7.71073 -7.42286 -6.75696 -4.68288 3.25577 3.32672 3.49890 3.59346 4.00644 4.16617 4.44251 4.52291 4.71092 4.82847 4.88702 4.90557 5.08963 5.19863 5.23441 5.39034 5.47835 5.52670 5.54602 5.59015 5.61042 5.68231 5.79803 5.88034 5.96286 5.97299 6.01636 6.08195 6.14422 6.17661 6.22896 6.35824 6.43632 6.49001 6.55351 6.61553 6.83603 7.14613 7.19978 7.48630 7.88586 8.07997 8.37187 8.87428 9.40749 10.36360 10.54455 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.024820 B = 0.005206 C = 0.004867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.854795 B = 5377.157252 C = 5751.115488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.055 3.945 3 Si 1.072 2.928 4 H -0.282 1.282 5 H -0.277 1.277 6 H -0.280 1.280 7 C -0.619 4.619 8 H 0.069 0.931 9 C 0.561 3.439 10 O -0.622 6.622 11 N -0.634 5.634 12 C 0.128 3.872 13 C -0.164 4.164 14 C 0.096 3.904 15 H 0.079 0.921 16 C -0.088 4.088 17 H 0.075 0.925 18 C -0.112 4.112 19 C -0.115 4.115 20 C 0.050 3.950 21 N -0.501 5.501 22 C 0.029 3.971 23 C -0.220 4.220 24 C -0.174 4.174 25 C 0.123 3.877 26 H 0.301 0.699 27 H 0.093 0.907 28 H 0.040 0.960 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.044 0.956 36 H 0.068 0.932 37 H 0.115 0.885 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.042 0.958 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.616 -13.056 -8.692 16.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.168 4.168 3 Si 0.897 3.103 4 H -0.208 1.208 5 H -0.202 1.202 6 H -0.205 1.205 7 C -0.655 4.655 8 H 0.087 0.913 9 C 0.370 3.630 10 O -0.510 6.510 11 N -0.370 5.370 12 C 0.003 3.997 13 C -0.204 4.204 14 C -0.012 4.012 15 H 0.097 0.903 16 C -0.108 4.108 17 H 0.094 0.906 18 C -0.150 4.150 19 C -0.153 4.153 20 C -0.078 4.078 21 N -0.221 5.221 22 C -0.081 4.081 23 C -0.259 4.259 24 C -0.212 4.212 25 C -0.002 4.002 26 H 0.115 0.885 27 H 0.111 0.889 28 H 0.058 0.942 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.062 0.938 36 H 0.086 0.914 37 H 0.133 0.867 38 H 0.116 0.884 39 H 0.110 0.890 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.060 0.940 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.651 -11.861 -8.029 15.059 hybrid contribution 0.705 -1.154 -0.603 1.481 sum 5.356 -13.016 -8.632 16.511 Atomic orbital electron populations 1.70138 1.08241 1.34675 1.30325 1.26575 0.95795 1.03050 0.91372 0.83587 0.75395 0.74104 0.77238 1.20823 1.20199 1.20508 1.21810 1.01052 0.92692 1.49927 0.91329 1.18345 0.82952 0.82109 0.79626 1.90510 1.29532 1.86667 1.44316 1.47994 1.34569 1.05364 1.49109 1.21210 0.88562 1.00284 0.89654 1.22568 1.01350 0.97115 0.99341 1.21742 0.97343 0.90588 0.91500 0.90287 1.21472 0.94610 0.98825 0.95855 0.90639 1.21577 0.98220 0.99027 0.96177 1.21600 0.96203 1.00132 0.97353 1.22202 0.92206 0.97918 0.95441 1.62120 1.07543 1.42581 1.09896 1.22573 0.94569 1.02892 0.88072 1.23547 1.03382 0.97967 1.00983 1.23051 1.02885 0.92104 1.03190 1.21178 0.99118 0.85714 0.94199 0.88516 0.88879 0.94172 0.91950 0.90984 0.92000 0.91083 0.91858 0.91617 0.93795 0.91357 0.86728 0.88357 0.89041 0.88801 0.88814 0.93955 0.89602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -24.25 13.21 55.55 0.73 -23.51 16 2 C 0.05 1.53 5.34 -17.37 -0.09 1.43 16 3 Si 1.07 23.49 29.98 -169.99 -5.10 18.39 16 4 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 6 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 7 C -0.62 -17.23 8.43 -35.63 -0.30 -17.53 16 8 H 0.07 1.78 6.34 -52.49 -0.33 1.45 16 9 C 0.56 15.58 7.22 -12.98 -0.09 15.49 16 10 O -0.62 -19.42 14.27 5.20 0.07 -19.35 16 11 N -0.63 -14.09 2.43 -174.81 -0.42 -14.51 16 12 C 0.13 2.37 6.25 -3.95 -0.02 2.35 16 13 C -0.16 -2.55 4.36 -26.82 -0.12 -2.67 16 14 C 0.10 1.39 2.19 -67.55 -0.15 1.24 16 15 H 0.08 1.12 8.06 -51.93 -0.42 0.70 16 16 C -0.09 -1.41 2.60 -90.53 -0.24 -1.64 16 17 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 18 C -0.11 -1.89 4.90 -26.62 -0.13 -2.02 16 19 C -0.12 -1.57 6.10 -26.64 -0.16 -1.74 16 20 C 0.05 0.64 3.79 -3.84 -0.01 0.63 16 21 N -0.50 -6.51 4.82 -218.53 -1.05 -7.57 16 22 C 0.03 0.32 5.00 -67.70 -0.34 -0.02 16 23 C -0.22 -2.25 9.51 -26.69 -0.25 -2.50 16 24 C -0.17 -1.69 9.98 -26.69 -0.27 -1.96 16 25 C 0.12 2.37 5.83 -3.80 -0.02 2.35 16 26 H 0.30 9.52 6.70 -40.82 -0.27 9.25 16 27 H 0.09 1.87 5.63 -51.93 -0.29 1.58 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.86 7.37 -51.93 -0.38 0.48 16 30 H 0.07 1.25 4.70 -51.92 -0.24 1.01 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.07 1.42 6.06 -51.93 -0.31 1.10 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.04 0.61 5.35 -51.93 -0.28 0.33 16 36 H 0.07 0.80 6.49 -51.92 -0.34 0.46 16 37 H 0.11 1.23 7.99 -51.93 -0.41 0.82 16 38 H 0.10 1.06 5.90 -51.93 -0.31 0.75 16 39 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.09 0.94 7.56 -51.93 -0.39 0.54 16 42 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.09 1.87 7.00 -51.93 -0.36 1.51 16 LS Contribution 317.79 15.07 4.79 4.79 Total: -1.00 -31.55 317.79 -9.70 -41.25 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -6.53 Total: 7.09 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: -2.20 Total: -6.59 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: -0.74 Total: -45.59 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: 0.07 Total: -19.35 kcal Atomic # 14 Polarization: 23.49 SS G_CDS: -5.10 Total: 18.39 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.55 -9.70 -41.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336527678.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.845 kcal (2) G-P(sol) polarization free energy of solvation -31.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds