Wall clock time and date at job start Tue Mar 31 2020 00:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86793 * 120.00247 * 2 1 4 4 H 1.48495 * 109.47465 * 269.99999 * 3 2 1 5 5 H 1.48500 * 109.47143 * 29.99995 * 3 2 1 6 6 H 1.48495 * 109.47245 * 149.99754 * 3 2 1 7 7 C 1.40051 * 119.99992 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00371 * 158.85977 * 7 2 1 9 9 C 1.46382 * 119.99754 * 338.86243 * 7 2 1 10 10 O 1.21689 * 119.99935 * 340.98860 * 9 7 2 11 11 N 1.34775 * 119.99678 * 160.99114 * 9 7 2 12 12 C 1.46942 * 120.68449 * 354.82689 * 11 9 7 13 13 C 1.52717 * 108.93773 * 233.85207 * 12 11 9 14 14 C 1.53102 * 109.48392 * 305.27929 * 13 12 11 15 15 H 1.09002 * 109.87177 * 300.57024 * 14 13 12 16 16 C 1.53083 * 109.54240 * 60.98265 * 14 13 12 17 17 H 1.08994 * 109.45397 * 179.24517 * 16 14 13 18 18 C 1.53057 * 109.18106 * 59.45193 * 16 14 13 19 19 C 1.53163 * 109.05480 * 58.15897 * 18 16 14 20 20 C 1.53012 * 109.27500 * 302.46563 * 19 18 16 21 21 N 1.46850 * 109.64613 * 58.94035 * 20 19 18 22 22 C 1.46905 * 111.00465 * 174.17166 * 21 20 19 23 23 C 1.53006 * 117.49458 * 7.73582 * 22 21 20 24 24 C 1.53008 * 117.49431 * 299.08027 * 22 21 20 25 25 C 1.46915 * 120.68134 * 175.10906 * 11 9 7 26 26 H 0.97001 * 120.00186 * 174.20330 * 1 2 3 27 27 H 1.08991 * 109.59716 * 353.67060 * 12 11 9 28 28 H 1.09005 * 109.59396 * 114.13759 * 12 11 9 29 29 H 1.08992 * 109.54954 * 185.20874 * 13 12 11 30 30 H 1.09008 * 109.34165 * 65.21559 * 13 12 11 31 31 H 1.08998 * 109.54278 * 177.96225 * 18 16 14 32 32 H 1.08999 * 109.54306 * 298.22059 * 18 16 14 33 33 H 1.08998 * 109.49085 * 182.54525 * 19 18 16 34 34 H 1.08996 * 109.57296 * 62.43735 * 19 18 16 35 35 H 1.08996 * 109.44614 * 298.87930 * 20 19 18 36 36 H 1.09009 * 109.44179 * 178.99327 * 20 19 18 37 37 H 1.08997 * 115.55151 * 153.40849 * 22 21 20 38 38 H 1.09002 * 117.49612 * 0.02562 * 23 22 21 39 39 H 1.09001 * 117.49414 * 145.02325 * 23 22 21 40 40 H 1.09000 * 117.49382 * 214.97813 * 24 22 21 41 41 H 1.08992 * 117.49774 * 359.97212 * 24 22 21 42 42 H 1.08998 * 109.55861 * 246.33893 * 25 11 9 43 43 H 1.09006 * 109.55470 * 6.55317 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 2.4883 2.0464 -1.4000 5 1 1.4383 2.6526 0.7000 6 1 3.5382 1.4401 0.7001 7 6 2.0070 -1.2129 0.0005 8 1 3.0324 -1.2446 -0.3367 9 6 1.3489 -2.4377 0.4582 10 8 0.3487 -2.3697 1.1481 11 7 1.8508 -3.6407 0.1157 12 6 2.9892 -3.7428 -0.8078 13 6 2.6136 -4.6768 -1.9562 14 6 2.1485 -6.0211 -1.3899 15 1 2.9458 -6.4692 -0.7970 16 6 0.9140 -5.8066 -0.5103 17 1 0.5762 -6.7661 -0.1188 18 6 -0.1998 -5.1786 -1.3515 19 6 -0.5122 -6.0992 -2.5350 20 6 0.7617 -6.3198 -3.3533 21 7 1.7983 -6.9170 -2.5017 22 6 2.9878 -7.2692 -3.2886 23 6 3.0309 -6.8105 -4.7476 24 6 2.8127 -8.2889 -4.4158 25 6 1.2670 -4.8772 0.6530 26 1 -0.4850 -0.8357 -0.0848 27 1 3.2281 -2.7560 -1.2041 28 1 3.8532 -4.1464 -0.2797 29 1 3.4807 -4.8331 -2.5978 30 1 1.8074 -4.2287 -2.5371 31 1 -1.0938 -5.0566 -0.7400 32 1 0.1263 -4.2063 -1.7208 33 1 -1.2732 -5.6373 -3.1641 34 1 -0.8779 -7.0573 -2.1658 35 1 1.1154 -5.3637 -3.7390 36 1 0.5465 -6.9891 -4.1864 37 1 3.9283 -7.2844 -2.7378 38 1 2.1767 -6.2472 -5.1234 39 1 3.9998 -6.5244 -5.1568 40 1 3.6381 -8.9747 -4.6068 41 1 1.8151 -8.6987 -4.5731 42 1 1.9888 -5.3677 1.3060 43 1 0.3659 -4.6395 1.2185 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336527678.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:33 Heat of formation + Delta-G solvation = -34.860985 kcal Electronic energy + Delta-G solvation = -23351.358951 eV Core-core repulsion = 20202.636107 eV Total energy + Delta-G solvation = -3148.722844 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.78825 -39.73260 -37.89343 -35.83353 -34.70056 -33.51300 -32.29400 -30.93125 -28.30489 -26.39365 -24.96447 -24.03946 -23.66981 -22.92338 -21.97719 -20.72998 -19.61270 -18.61693 -17.77583 -17.45072 -16.63531 -16.23990 -16.14766 -15.71472 -15.54889 -15.04392 -14.87576 -14.55495 -14.28998 -14.18842 -14.01826 -13.51631 -13.44777 -13.07213 -12.93191 -12.61784 -12.45279 -12.38865 -12.30692 -12.11719 -11.98900 -11.90058 -11.72711 -11.52788 -11.25642 -11.17451 -10.96286 -10.83754 -9.91914 -9.32020 -9.02135 -8.94216 -6.91088 1.49620 1.56051 1.81465 2.30151 2.42281 2.64875 2.75699 3.13241 3.38445 3.56345 3.73877 3.83901 3.98658 4.02578 4.10312 4.13433 4.17904 4.21905 4.24907 4.44267 4.51951 4.55850 4.70057 4.72812 4.77754 4.79788 4.84281 4.85338 4.92083 4.99854 5.05492 5.06796 5.12196 5.16335 5.26473 5.28965 5.46956 5.58278 5.70668 6.06722 6.07926 6.18544 6.23201 6.78278 7.34763 8.21277 8.27819 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.024820 B = 0.005206 C = 0.004867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.854795 B = 5377.157252 C = 5751.115488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.005 3.995 3 Si 1.129 2.871 4 H -0.255 1.255 5 H -0.279 1.279 6 H -0.260 1.260 7 C -0.639 4.639 8 H 0.085 0.915 9 C 0.546 3.454 10 O -0.669 6.669 11 N -0.633 5.633 12 C 0.123 3.877 13 C -0.150 4.150 14 C 0.105 3.895 15 H 0.095 0.905 16 C -0.079 4.079 17 H 0.094 0.906 18 C -0.109 4.109 19 C -0.108 4.108 20 C 0.054 3.946 21 N -0.499 5.499 22 C 0.012 3.988 23 C -0.219 4.219 24 C -0.160 4.160 25 C 0.120 3.880 26 H 0.276 0.724 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.088 0.912 30 H 0.049 0.951 31 H 0.039 0.961 32 H 0.032 0.968 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.032 0.968 36 H 0.087 0.913 37 H 0.125 0.875 38 H 0.090 0.910 39 H 0.102 0.898 40 H 0.111 0.889 41 H 0.092 0.908 42 H 0.065 0.935 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.181 -14.687 -10.238 19.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.209 4.209 3 Si 0.945 3.055 4 H -0.180 1.180 5 H -0.204 1.204 6 H -0.184 1.184 7 C -0.674 4.674 8 H 0.103 0.897 9 C 0.354 3.646 10 O -0.561 6.561 11 N -0.367 5.367 12 C 0.000 4.000 13 C -0.190 4.190 14 C -0.003 4.003 15 H 0.113 0.887 16 C -0.099 4.099 17 H 0.112 0.888 18 C -0.147 4.147 19 C -0.146 4.146 20 C -0.073 4.073 21 N -0.220 5.220 22 C -0.097 4.097 23 C -0.258 4.258 24 C -0.198 4.198 25 C -0.004 4.004 26 H 0.088 0.912 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.107 0.893 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.050 0.950 36 H 0.106 0.894 37 H 0.143 0.857 38 H 0.108 0.892 39 H 0.120 0.880 40 H 0.130 0.870 41 H 0.110 0.890 42 H 0.084 0.916 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.253 -13.563 -9.616 18.139 hybrid contribution -0.083 -0.756 -0.122 0.770 sum 7.170 -14.319 -9.738 18.742 Atomic orbital electron populations 1.70293 1.09541 1.32978 1.33603 1.28447 0.95712 1.07429 0.89345 0.82922 0.74530 0.69155 0.78903 1.17963 1.20424 1.18374 1.22208 1.01896 0.93336 1.50008 0.89664 1.18632 0.82543 0.84100 0.79329 1.90466 1.31407 1.87868 1.46373 1.47867 1.35094 1.04779 1.48952 1.21406 0.87995 1.00450 0.90179 1.22436 1.01589 0.96880 0.98079 1.21615 0.96424 0.90282 0.92013 0.88679 1.21389 0.95343 0.98340 0.94838 0.88766 1.21488 0.97635 0.98168 0.97381 1.21551 0.97179 0.99703 0.96118 1.22166 0.91636 0.97857 0.95642 1.62128 1.08479 1.41432 1.09933 1.22714 0.94078 1.04470 0.88484 1.23562 1.03697 0.98532 0.99991 1.23112 1.03533 0.91964 1.01202 1.21320 0.98110 0.85254 0.95690 0.91229 0.90737 0.91576 0.89341 0.93233 0.94203 0.94892 0.91329 0.90346 0.94997 0.89442 0.85716 0.89161 0.87975 0.87025 0.88968 0.91636 0.93139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -52.58 13.21 21.84 0.29 -52.30 16 2 C 0.01 0.31 5.34 85.31 0.46 0.77 16 3 Si 1.13 47.05 29.98 68.60 2.06 49.10 16 4 H -0.26 -9.50 7.11 99.48 0.71 -8.80 16 5 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 6 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 7 C -0.64 -36.41 8.43 24.83 0.21 -36.20 16 8 H 0.09 4.44 6.34 -2.91 -0.02 4.42 16 9 C 0.55 31.69 7.22 86.36 0.62 32.31 16 10 O -0.67 -44.41 14.27 -4.31 -0.06 -44.47 16 11 N -0.63 -28.74 2.43 -825.19 -2.00 -30.75 16 12 C 0.12 4.48 6.25 86.20 0.54 5.01 16 13 C -0.15 -4.44 4.36 30.53 0.13 -4.31 16 14 C 0.10 2.79 2.19 44.95 0.10 2.89 16 15 H 0.10 2.31 8.06 -2.39 -0.02 2.29 16 16 C -0.08 -2.50 2.60 -10.74 -0.03 -2.53 16 17 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 18 C -0.11 -3.79 4.90 30.67 0.15 -3.64 16 19 C -0.11 -2.86 6.10 30.65 0.19 -2.67 16 20 C 0.05 1.30 3.79 86.32 0.33 1.62 16 21 N -0.50 -11.51 4.82 -845.31 -4.07 -15.58 16 22 C 0.01 0.22 5.00 44.92 0.22 0.44 16 23 C -0.22 -3.74 9.51 30.62 0.29 -3.45 16 24 C -0.16 -2.48 9.98 30.62 0.31 -2.18 16 25 C 0.12 4.72 5.83 86.31 0.50 5.22 16 26 H 0.28 18.66 6.70 -92.71 -0.62 18.04 16 27 H 0.07 2.98 5.63 -2.39 -0.01 2.96 16 28 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 29 H 0.09 2.18 7.37 -2.39 -0.02 2.16 16 30 H 0.05 1.72 4.70 -2.38 -0.01 1.71 16 31 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.03 1.38 6.06 -2.39 -0.01 1.37 16 33 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.03 0.85 5.35 -2.39 -0.01 0.84 16 36 H 0.09 1.79 6.49 -2.38 -0.02 1.77 16 37 H 0.13 2.12 7.99 -2.39 -0.02 2.11 16 38 H 0.09 1.71 5.90 -2.39 -0.01 1.70 16 39 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.09 1.49 7.56 -2.39 -0.02 1.47 16 42 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 43 H 0.05 2.33 7.00 -2.38 -0.02 2.32 16 Total: -1.00 -72.98 317.79 1.38 -71.60 By element: Atomic # 1 Polarization: 27.95 SS G_CDS: 1.15 Total: 29.11 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: 4.02 Total: -6.71 kcal Atomic # 7 Polarization: -92.84 SS G_CDS: -5.79 Total: -98.62 kcal Atomic # 8 Polarization: -44.41 SS G_CDS: -0.06 Total: -44.47 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.06 Total: 49.10 kcal Total: -72.98 1.38 -71.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336527678.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.736 kcal (2) G-P(sol) polarization free energy of solvation -72.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds