Wall clock time and date at job start Mon Mar 30 2020 23:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99722 * 2 1 4 4 H 1.48497 * 109.47064 * 270.00022 * 3 2 1 5 5 H 1.48497 * 109.47054 * 30.00182 * 3 2 1 6 6 H 1.48497 * 109.46934 * 149.99842 * 3 2 1 7 7 C 1.37870 * 120.00274 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00186 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99885 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46830 * 179.97438 * 9 7 2 11 11 C 1.50705 * 109.46830 * 179.97438 * 10 9 7 12 12 N 1.31125 * 126.55556 * 90.25224 * 11 10 9 13 13 C 1.34488 * 105.61715 * 180.12175 * 12 11 10 14 14 C 1.50699 * 126.28692 * 179.90396 * 13 12 11 15 15 C 1.52997 * 109.47339 * 269.71475 * 14 13 12 16 16 C 1.53002 * 109.47469 * 179.97438 * 15 14 13 17 17 C 1.52997 * 109.46817 * 64.99892 * 16 15 14 18 18 C 1.52999 * 109.47317 * 179.97438 * 17 16 15 19 19 C 1.53005 * 109.47159 * 300.00546 * 18 17 16 20 20 C 1.52997 * 109.47452 * 59.99536 * 19 18 17 21 21 C 1.53000 * 109.47233 * 184.99697 * 16 15 14 22 22 N 1.29946 * 107.42556 * 359.64272 * 13 12 11 23 23 O 1.21292 * 110.24989 * 0.22655 * 22 13 12 24 24 H 0.96998 * 120.00005 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47169 * 59.99847 * 9 7 2 26 26 H 1.09004 * 109.47089 * 299.99764 * 9 7 2 27 27 H 1.09000 * 109.47150 * 60.00104 * 10 9 7 28 28 H 1.08994 * 109.47741 * 300.00106 * 10 9 7 29 29 H 1.08997 * 109.47531 * 149.71057 * 14 13 12 30 30 H 1.09006 * 109.47449 * 29.71558 * 14 13 12 31 31 H 1.09008 * 109.47149 * 59.99835 * 15 14 13 32 32 H 1.08997 * 109.47163 * 299.99905 * 15 14 13 33 33 H 1.09002 * 109.47070 * 305.00072 * 16 15 14 34 34 H 1.08996 * 109.47853 * 300.00202 * 17 16 15 35 35 H 1.09002 * 109.47153 * 60.00231 * 17 16 15 36 36 H 1.09000 * 109.47486 * 180.02562 * 18 17 16 37 37 H 1.09002 * 109.46716 * 60.00091 * 18 17 16 38 38 H 1.09002 * 109.46935 * 299.99411 * 19 18 17 39 39 H 1.09001 * 109.46812 * 179.97438 * 19 18 17 40 40 H 1.08993 * 109.47194 * 179.97438 * 20 19 18 41 41 H 1.09002 * 109.46695 * 59.99734 * 20 19 18 42 42 H 1.08992 * 109.47399 * 300.00166 * 21 16 15 43 43 H 1.09004 * 109.46724 * 60.00652 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4919 -4.9671 0.0012 12 7 1.1051 -5.6461 -1.0518 13 6 0.4731 -6.7313 -0.5707 14 6 -0.1604 -7.8291 -1.3859 15 6 -1.6242 -7.4800 -1.6615 16 6 -2.2672 -8.5942 -2.4898 17 6 -2.3066 -9.8834 -1.6668 18 6 -2.9501 -10.9976 -2.4948 19 6 -4.3753 -10.5918 -2.8756 20 6 -4.3360 -9.3026 -3.6985 21 6 -3.6924 -8.1888 -2.8710 22 7 0.5137 -6.6623 0.7263 23 8 1.0947 -5.6563 1.0751 24 1 -0.4850 0.8400 0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8903 27 1 2.8721 -3.6042 0.8905 28 1 2.8721 -3.6043 -0.8894 29 1 -0.1084 -8.7677 -0.8342 30 1 0.3724 -7.9334 -2.3312 31 1 -1.6762 -6.5413 -2.2134 32 1 -2.1570 -7.3757 -0.7164 33 1 -1.6818 -8.7584 -3.3945 34 1 -1.2913 -10.1723 -1.3951 35 1 -2.8920 -9.7192 -0.7621 36 1 -2.9786 -11.9159 -1.9083 37 1 -2.3650 -11.1619 -3.3997 38 1 -4.9604 -10.4275 -1.9707 39 1 -4.8336 -11.3854 -3.4658 40 1 -5.3512 -9.0138 -3.9702 41 1 -3.7509 -9.4670 -4.6034 42 1 -4.2777 -8.0246 -1.9664 43 1 -3.6643 -7.2703 -3.4574 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361015318.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:58:19 Heat of formation + Delta-G solvation = 10.879086 kcal Electronic energy + Delta-G solvation = -20992.692453 eV Core-core repulsion = 17845.953047 eV Total energy + Delta-G solvation = -3146.739405 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -45.07779 -39.09135 -35.96983 -34.82927 -33.63471 -32.38164 -31.00102 -30.32409 -29.11281 -25.83470 -24.87444 -23.13547 -22.80571 -21.88174 -21.04879 -20.12188 -19.93252 -17.61424 -16.93641 -16.37620 -15.75343 -15.11971 -14.59657 -14.54126 -14.27753 -14.18917 -13.96060 -13.62745 -13.20690 -12.94323 -12.43618 -12.36347 -12.11312 -12.03197 -11.82017 -11.55368 -11.33734 -11.30754 -11.06973 -10.99493 -10.88698 -10.73542 -10.63149 -10.53357 -10.25660 -10.16156 -10.11429 -9.93097 -9.32708 -9.14082 -8.45350 -6.09642 -4.14399 1.64125 2.66890 3.28688 3.34508 3.36844 3.41412 3.97691 4.36550 4.42132 4.46022 4.50643 4.56866 4.87891 4.94431 5.13274 5.17480 5.25990 5.26985 5.27447 5.31352 5.40115 5.43252 5.50385 5.64815 5.74376 5.80826 5.84613 5.92421 5.93916 5.99184 6.01991 6.08030 6.11259 6.14856 6.22426 6.29321 6.33235 6.47021 6.63543 7.49055 7.56266 7.85941 8.21416 8.63976 8.90900 9.50550 11.01633 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.026531 B = 0.002862 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.100010 B = 9779.452400 C =10544.901590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.526 4.526 8 H 0.062 0.938 9 C 0.028 3.972 10 C -0.028 4.028 11 C 0.213 3.787 12 N -0.496 5.496 13 C 0.165 3.835 14 C -0.024 4.024 15 C -0.111 4.111 16 C -0.083 4.083 17 C -0.118 4.118 18 C -0.119 4.119 19 C -0.120 4.120 20 C -0.119 4.119 21 C -0.116 4.116 22 N -0.401 5.401 23 O 0.066 5.934 24 H 0.263 0.737 25 H 0.026 0.974 26 H 0.024 0.976 27 H 0.090 0.910 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.220 -19.903 -5.154 21.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.564 4.564 8 H 0.080 0.920 9 C -0.010 4.010 10 C -0.068 4.068 11 C -0.006 4.006 12 N -0.230 5.230 13 C -0.108 4.108 14 C -0.063 4.063 15 C -0.149 4.149 16 C -0.102 4.102 17 C -0.156 4.156 18 C -0.157 4.157 19 C -0.158 4.158 20 C -0.157 4.157 21 C -0.153 4.153 22 N -0.112 5.112 23 O 0.010 5.990 24 H 0.073 0.927 25 H 0.044 0.956 26 H 0.042 0.958 27 H 0.109 0.891 28 H 0.118 0.882 29 H 0.106 0.894 30 H 0.110 0.890 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.756 -20.480 -5.052 21.865 hybrid contribution 0.420 1.125 0.072 1.203 sum -5.336 -19.355 -4.980 20.686 Atomic orbital electron populations 1.69968 1.06159 1.26966 1.49889 1.25014 0.94873 0.99449 0.94927 0.86507 0.79775 0.83026 0.78194 1.20546 1.21175 1.19695 1.21071 0.93165 0.90220 1.51917 0.92025 1.19154 0.93581 0.89839 0.98450 1.20745 0.97961 0.83719 1.04335 1.29626 0.94203 0.97033 0.79765 1.71921 1.16658 1.05306 1.29138 1.25779 0.99417 0.97022 0.88600 1.19953 0.95356 0.92616 0.98351 1.21615 0.93385 0.99120 1.00806 1.21142 0.96239 0.94346 0.98461 1.21671 1.00853 0.94548 0.98501 1.21535 0.96162 0.98003 0.99982 1.21545 0.96960 0.97294 0.99977 1.21519 1.00529 0.95108 0.98503 1.21575 0.95508 0.98142 1.00107 1.74532 1.16529 1.04421 1.15714 1.85262 1.52450 1.25011 1.36259 0.92749 0.95556 0.95812 0.89141 0.88248 0.89436 0.89025 0.90949 0.91564 0.90883 0.91752 0.91881 0.92228 0.92057 0.92090 0.92348 0.92157 0.92048 0.91926 0.91743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.18 13.29 55.43 0.74 -25.44 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.53 -14.07 9.11 -34.44 -0.31 -14.39 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.03 0.69 4.96 -27.88 -0.14 0.55 16 10 C -0.03 -0.55 5.78 -27.88 -0.16 -0.71 16 11 C 0.21 4.13 7.77 -13.06 -0.10 4.03 16 12 N -0.50 -9.59 11.55 -9.87 -0.11 -9.70 16 13 C 0.16 2.84 7.47 -156.38 -1.17 1.67 16 14 C -0.02 -0.30 5.60 -27.89 -0.16 -0.46 16 15 C -0.11 -1.30 4.66 -26.73 -0.12 -1.43 16 16 C -0.08 -0.77 2.19 -90.62 -0.20 -0.97 16 17 C -0.12 -1.00 4.96 -26.73 -0.13 -1.14 16 18 C -0.12 -0.89 5.92 -26.73 -0.16 -1.05 16 19 C -0.12 -0.88 5.92 -26.73 -0.16 -1.04 16 20 C -0.12 -0.93 5.92 -26.76 -0.16 -1.09 16 21 C -0.12 -1.05 5.20 -26.76 -0.14 -1.19 16 22 N -0.40 -7.42 12.16 30.89 0.38 -7.04 16 23 O 0.07 1.26 11.31 18.09 0.20 1.46 16 24 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 25 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 28 H 0.10 1.83 8.14 -51.93 -0.42 1.40 16 29 H 0.09 0.97 6.57 -51.93 -0.34 0.63 16 30 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.07 0.96 8.14 -51.92 -0.42 0.54 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.53 6.57 -51.93 -0.34 0.19 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 347.68 15.07 5.24 5.24 Total: -1.00 -29.75 347.68 -9.20 -38.95 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -7.41 Total: -3.72 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: -3.21 Total: -15.65 kcal Atomic # 7 Polarization: -43.19 SS G_CDS: 1.00 Total: -42.19 kcal Atomic # 8 Polarization: 1.26 SS G_CDS: 0.20 Total: 1.46 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.75 -9.20 -38.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361015318.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.828 kcal (2) G-P(sol) polarization free energy of solvation -29.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds