Wall clock time and date at job start Tue Mar 31 2020 00:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99965 * 2 1 4 4 H 1.48495 * 109.47528 * 273.71811 * 3 2 1 5 5 H 1.48500 * 109.46963 * 33.72147 * 3 2 1 6 6 H 1.48500 * 109.47139 * 153.71824 * 3 2 1 7 7 C 1.37881 * 119.99805 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00175 * 2.95040 * 7 2 1 9 9 C 1.50702 * 119.99343 * 182.67301 * 7 2 1 10 10 C 1.53003 * 115.55071 * 295.00263 * 9 7 2 11 11 N 1.46503 * 109.47185 * 304.64827 * 10 9 7 12 12 C 1.34773 * 119.99542 * 174.81253 * 11 10 9 13 13 O 1.21583 * 120.00331 * 4.77347 * 12 11 10 14 14 N 1.34776 * 119.99631 * 184.77409 * 12 11 10 15 15 C 1.47254 * 136.46493 * 5.19012 * 14 12 11 16 16 C 1.53986 * 87.66942 * 151.82596 * 15 14 12 17 17 H 1.09002 * 114.97879 * 142.13646 * 16 15 14 18 18 C 1.53038 * 111.64059 * 273.72785 * 16 15 14 19 19 C 1.53015 * 109.05760 * 140.95198 * 18 16 15 20 20 C 1.52549 * 108.98476 * 296.61896 * 19 18 16 21 21 C 1.51644 * 111.23801 * 63.21694 * 20 19 18 22 22 C 1.46560 * 136.46185 * 184.81120 * 14 12 11 23 23 H 1.09003 * 111.28682 * 96.07783 * 22 14 12 24 24 C 1.53007 * 117.49409 * 149.33824 * 9 7 2 25 25 C 1.52997 * 117.49843 * 80.68072 * 9 7 2 26 26 H 0.97001 * 120.00083 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.46715 * 64.65307 * 10 9 7 28 28 H 1.08993 * 109.46765 * 184.65035 * 10 9 7 29 29 H 0.96994 * 119.99787 * 354.81751 * 11 10 9 30 30 H 1.09006 * 113.51725 * 266.52369 * 15 14 12 31 31 H 1.09003 * 113.52173 * 37.05289 * 15 14 12 32 32 H 1.08996 * 109.54023 * 260.82610 * 18 16 15 33 33 H 1.09004 * 109.53406 * 20.99400 * 18 16 15 34 34 H 1.08997 * 109.55663 * 56.47290 * 19 18 16 35 35 H 1.09005 * 109.54818 * 176.77466 * 19 18 16 36 36 H 1.09006 * 109.12584 * 183.66721 * 20 19 18 37 37 H 1.08999 * 109.12899 * 302.76091 * 20 19 18 38 38 H 1.08994 * 108.55148 * 73.85854 * 21 20 19 39 39 H 1.09004 * 108.54936 * 191.59426 * 21 20 19 40 40 H 1.08995 * 117.50000 * 359.97438 * 24 9 7 41 41 H 1.09000 * 117.49383 * 145.02051 * 24 9 7 42 42 H 1.08998 * 117.49706 * 214.97036 * 25 9 7 43 43 H 1.08996 * 117.50309 * 359.97017 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4180 2.0919 -1.3970 5 1 1.4881 2.6286 0.7773 6 1 3.5838 1.4187 0.6199 7 6 2.0045 -1.1941 -0.0005 8 1 1.4656 -2.1287 -0.0491 9 6 3.5103 -1.1947 0.0603 10 6 4.2199 -0.5820 -1.1488 11 7 3.7708 -1.2538 -2.3708 12 6 4.1841 -0.8101 -3.5744 13 8 4.9969 0.0914 -3.6438 14 7 3.6963 -1.3658 -4.7012 15 6 2.6731 -2.3690 -5.0404 16 6 2.4953 -1.6410 -6.3856 17 1 2.3234 -2.2925 -7.2424 18 6 1.4948 -0.4883 -6.2756 19 6 1.9983 0.6917 -7.1096 20 6 3.3179 1.1854 -6.5248 21 6 4.3908 0.1173 -6.6111 22 6 3.9411 -1.2387 -6.1406 23 1 4.6318 -2.0045 -6.4937 24 6 4.1888 -2.3786 0.7525 25 6 4.1619 -1.0071 1.4318 26 1 -0.4850 0.8400 0.0004 27 1 3.9824 0.4800 -1.2097 28 1 5.2971 -0.7077 -1.0400 29 1 3.1759 -2.0178 -2.3135 30 1 3.0707 -3.3789 -5.1416 31 1 1.7916 -2.3248 -4.4007 32 1 0.5236 -0.8115 -6.6504 33 1 1.4008 -0.1855 -5.2327 34 1 2.1531 0.3707 -8.1396 35 1 1.2638 1.4967 -7.0832 36 1 3.6458 2.0664 -7.0768 37 1 3.1665 1.4559 -5.4798 38 1 4.7165 0.0359 -7.6481 39 1 5.2413 0.4302 -6.0053 40 1 3.5461 -3.1567 1.1642 41 1 5.1409 -2.7206 0.3467 42 1 5.0964 -0.4475 1.4727 43 1 3.5016 -0.8828 2.2900 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000377350581.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:14:02 Heat of formation + Delta-G solvation = 3.482107 kcal Electronic energy + Delta-G solvation = -22957.537803 eV Core-core repulsion = 19810.477640 eV Total energy + Delta-G solvation = -3147.060163 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.17403 -39.98768 -38.54690 -35.97653 -34.84488 -34.31050 -32.30460 -30.51083 -28.26257 -26.96428 -26.58198 -24.11675 -23.23268 -22.35748 -21.46718 -21.15705 -19.67014 -18.49708 -18.18759 -17.36167 -17.06107 -17.01955 -15.99707 -15.77546 -15.51732 -15.19142 -14.97102 -14.89604 -14.82566 -14.20485 -14.10843 -13.81148 -13.37716 -13.20332 -13.12551 -12.68366 -12.62358 -12.37865 -12.18977 -12.09757 -12.03292 -11.63456 -11.54617 -11.40532 -11.10785 -10.97845 -10.78959 -10.73185 -10.41510 -10.05170 -9.37169 -8.36509 -6.38575 1.23851 1.31132 1.38727 1.58905 2.20677 2.27395 2.87891 3.07395 3.28490 3.36719 3.77629 3.88091 4.00691 4.03988 4.14927 4.26374 4.33703 4.37852 4.43217 4.49109 4.51500 4.56515 4.64715 4.70518 4.75008 4.84316 4.89585 4.91702 5.02311 5.03355 5.06289 5.18614 5.24027 5.25500 5.35856 5.45620 5.49452 5.56665 5.62444 5.68052 6.25121 6.39872 6.67662 7.14285 7.29779 7.66084 8.77744 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019268 B = 0.006106 C = 0.005635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.816570 B = 4584.369882 C = 4967.389786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.041 3.959 3 Si 0.916 3.084 4 H -0.303 1.303 5 H -0.294 1.294 6 H -0.230 1.230 7 C -0.468 4.468 8 H 0.049 0.951 9 C -0.047 4.047 10 C 0.181 3.819 11 N -0.718 5.718 12 C 0.723 3.277 13 O -0.642 6.642 14 N -0.671 5.671 15 C 0.093 3.907 16 C -0.095 4.095 17 H 0.150 0.850 18 C -0.105 4.105 19 C -0.108 4.108 20 C -0.112 4.112 21 C -0.122 4.122 22 C 0.155 3.845 23 H 0.103 0.897 24 C -0.152 4.152 25 C -0.182 4.182 26 H 0.264 0.736 27 H 0.023 0.977 28 H 0.056 0.944 29 H 0.405 0.595 30 H 0.113 0.887 31 H 0.064 0.936 32 H 0.089 0.911 33 H 0.021 0.979 34 H 0.096 0.904 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.008 0.992 38 H 0.101 0.899 39 H 0.044 0.956 40 H 0.088 0.912 41 H 0.100 0.900 42 H 0.091 0.909 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.917 -5.638 -15.635 17.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.158 4.158 3 Si 0.744 3.256 4 H -0.231 1.231 5 H -0.221 1.221 6 H -0.153 1.153 7 C -0.506 4.506 8 H 0.067 0.933 9 C -0.048 4.048 10 C 0.057 3.943 11 N -0.371 5.371 12 C 0.426 3.574 13 O -0.525 6.525 14 N -0.410 5.410 15 C -0.029 4.029 16 C -0.113 4.113 17 H 0.167 0.833 18 C -0.143 4.143 19 C -0.145 4.145 20 C -0.150 4.150 21 C -0.160 4.160 22 C 0.052 3.948 23 H 0.121 0.879 24 C -0.188 4.188 25 C -0.220 4.220 26 H 0.073 0.927 27 H 0.042 0.958 28 H 0.074 0.926 29 H 0.240 0.760 30 H 0.131 0.869 31 H 0.083 0.917 32 H 0.108 0.892 33 H 0.040 0.960 34 H 0.115 0.885 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.027 0.973 38 H 0.120 0.880 39 H 0.062 0.938 40 H 0.106 0.894 41 H 0.118 0.882 42 H 0.110 0.890 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.441 -4.776 -15.431 17.390 hybrid contribution -0.260 1.027 0.747 1.296 sum 6.181 -3.748 -14.684 16.367 Atomic orbital electron populations 1.69977 1.07577 1.27609 1.52386 1.25417 0.94855 1.01406 0.94095 0.86294 0.81218 0.80993 0.77063 1.23059 1.22067 1.15322 1.20325 0.88308 0.92795 1.49164 0.93268 1.19489 0.93261 1.01993 0.90085 1.20732 0.96285 0.94106 0.83225 1.44874 1.52958 1.35705 1.03598 1.15532 0.80346 0.81473 0.80042 1.90791 1.40145 1.34952 1.86657 1.48821 1.42848 1.44311 1.05050 1.23530 0.90523 0.93602 0.95293 1.22795 0.92927 0.97321 0.98300 0.83285 1.21396 0.98941 0.95185 0.98780 1.21351 0.95439 0.97414 1.00340 1.21051 0.96627 0.98616 0.98704 1.20829 0.98371 0.94336 1.02446 1.21879 0.97991 0.98067 0.76869 0.87888 1.22857 1.01296 0.90976 1.03712 1.23064 1.01730 1.00508 0.96679 0.92692 0.95842 0.92555 0.76022 0.86883 0.91749 0.89221 0.95975 0.88550 0.92269 0.91345 0.97346 0.88024 0.93760 0.89369 0.88160 0.89014 0.89830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.20 13.96 21.45 0.30 -56.90 16 2 C 0.04 2.37 5.47 84.66 0.46 2.83 16 3 Si 0.92 47.06 24.72 68.60 1.70 48.75 16 4 H -0.30 -16.65 7.11 99.48 0.71 -15.94 16 5 H -0.29 -14.89 7.11 99.48 0.71 -14.18 16 6 H -0.23 -10.85 5.89 99.48 0.59 -10.27 16 7 C -0.47 -25.15 8.85 25.60 0.23 -24.93 16 8 H 0.05 2.87 8.06 -2.91 -0.02 2.85 16 9 C -0.05 -2.09 0.91 -52.92 -0.05 -2.14 16 10 C 0.18 8.13 5.01 86.38 0.43 8.56 16 11 N -0.72 -30.36 5.36 -478.55 -2.56 -32.93 16 12 C 0.72 30.55 8.74 179.06 1.57 32.12 16 13 O -0.64 -31.66 15.65 -3.98 -0.06 -31.72 16 14 N -0.67 -21.41 3.38 -881.73 -2.98 -24.38 16 15 C 0.09 2.10 7.69 81.45 0.63 2.72 16 16 C -0.09 -1.70 4.57 -10.76 -0.05 -1.75 16 17 H 0.15 1.37 8.14 -2.39 -0.02 1.35 16 18 C -0.11 -2.39 5.54 30.61 0.17 -2.22 16 19 C -0.11 -2.28 5.89 30.45 0.18 -2.10 16 20 C -0.11 -3.08 5.85 30.00 0.18 -2.91 16 21 C -0.12 -3.09 5.37 29.31 0.16 -2.93 16 22 C 0.15 3.59 3.89 38.72 0.15 3.74 16 23 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 24 C -0.15 -5.54 9.93 30.62 0.30 -5.24 16 25 C -0.18 -7.16 8.68 30.62 0.27 -6.90 16 26 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 27 H 0.02 1.19 4.48 -2.39 -0.01 1.18 16 28 H 0.06 2.36 8.10 -2.39 -0.02 2.34 16 29 H 0.40 16.21 7.92 -92.71 -0.73 15.47 16 30 H 0.11 1.84 8.14 -2.38 -0.02 1.82 16 31 H 0.06 1.70 8.04 -2.39 -0.02 1.68 16 32 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.02 0.71 7.70 -2.38 -0.02 0.69 16 34 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 36 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 37 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 38 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.04 1.47 6.97 -2.38 -0.02 1.45 16 40 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 41 H 0.10 3.16 8.14 -2.39 -0.02 3.15 16 42 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 43 H 0.08 3.40 8.14 -2.39 -0.02 3.38 16 Total: -1.00 -73.66 334.97 1.14 -72.52 By element: Atomic # 1 Polarization: 25.68 SS G_CDS: 0.13 Total: 25.82 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: 4.62 Total: -1.15 kcal Atomic # 7 Polarization: -108.96 SS G_CDS: -5.24 Total: -114.21 kcal Atomic # 8 Polarization: -31.66 SS G_CDS: -0.06 Total: -31.72 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 1.70 Total: 48.75 kcal Total: -73.66 1.14 -72.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377350581.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.999 kcal (2) G-P(sol) polarization free energy of solvation -73.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds