Wall clock time and date at job start Tue Mar 31 2020 00:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 120.00227 * 2 1 4 4 H 1.48503 * 109.47247 * 239.99944 * 3 2 1 5 5 H 1.48506 * 109.47137 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47618 * 119.99744 * 3 2 1 7 7 C 1.38818 * 119.99905 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99615 * 194.37823 * 7 2 1 9 9 N 1.36935 * 119.99856 * 14.38354 * 7 2 1 10 10 C 1.46959 * 120.59269 * 209.56667 * 9 7 2 11 11 C 1.53368 * 108.63765 * 235.24543 * 10 9 7 12 12 N 1.46961 * 108.63331 * 310.57639 * 11 10 9 13 13 C 1.34780 * 120.59153 * 234.94534 * 12 11 10 14 14 O 1.21286 * 119.99706 * 175.87181 * 13 12 11 15 15 C 1.50694 * 120.00281 * 355.88352 * 13 12 11 16 16 H 1.08998 * 109.61603 * 39.23858 * 15 13 12 17 17 C 1.53300 * 109.61349 * 278.87967 * 15 13 12 18 18 C 1.52878 * 108.59080 * 165.82807 * 17 15 13 19 19 C 1.52072 * 110.51054 * 54.88539 * 18 17 15 20 20 H 1.09001 * 114.63746 * 194.36850 * 19 18 17 21 21 C 1.52307 * 119.83944 * 49.55929 * 19 18 17 22 22 C 1.52059 * 120.02422 * 338.30731 * 19 18 17 23 23 H 1.09005 * 117.25366 * 216.65986 * 22 19 18 24 24 C 1.52760 * 120.59320 * 5.09972 * 22 19 18 25 25 C 1.46959 * 118.81173 * 55.22413 * 12 11 10 26 26 C 1.46961 * 120.59558 * 29.58621 * 9 7 2 27 27 H 0.96998 * 120.00101 * 359.97438 * 1 2 3 28 28 H 1.09007 * 109.61179 * 115.49833 * 10 9 7 29 29 H 1.09003 * 109.61370 * 354.99412 * 10 9 7 30 30 H 1.09003 * 109.60993 * 190.82887 * 11 10 9 31 31 H 1.08999 * 109.74926 * 70.40432 * 11 10 9 32 32 H 1.09002 * 109.62277 * 285.55599 * 17 15 13 33 33 H 1.09000 * 109.62352 * 46.09850 * 17 15 13 34 34 H 1.08995 * 109.27329 * 175.15521 * 18 17 15 35 35 H 1.08997 * 109.26759 * 294.62542 * 18 17 15 36 36 H 1.09001 * 117.53891 * 357.55204 * 21 19 18 37 37 H 1.08997 * 117.53800 * 142.72555 * 21 19 18 38 38 H 1.09000 * 109.51986 * 218.57832 * 24 22 19 39 39 H 1.08993 * 109.21640 * 98.98191 * 24 22 19 40 40 H 1.09007 * 109.61179 * 64.52086 * 25 12 11 41 41 H 1.09003 * 109.61370 * 185.02507 * 25 12 11 42 42 H 1.09006 * 109.61191 * 244.49784 * 26 9 7 43 43 H 1.09003 * 109.61144 * 5.00590 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0648 -1.2167 0.2328 9 7 1.3577 -2.3696 -0.2935 10 6 1.8050 -3.6433 0.2874 11 6 2.0721 -4.6347 -0.8518 12 7 0.9123 -4.6364 -1.7544 13 6 0.2738 -5.7864 -2.0485 14 8 -0.7266 -5.7663 -2.7340 15 6 0.8025 -7.0970 -1.5254 16 1 1.1627 -6.9652 -0.5051 17 6 1.9508 -7.5816 -2.4180 18 6 2.6962 -8.6997 -1.6890 19 6 1.7342 -9.8056 -1.2841 20 1 2.1337 -10.5112 -0.5555 21 6 0.7691 -10.3840 -2.3106 22 6 0.2475 -9.5124 -1.1578 23 1 -0.2946 -10.0169 -0.3579 24 6 -0.3108 -8.1444 -1.5457 25 6 0.4650 -3.3628 -2.3353 26 6 0.1979 -2.3714 -1.1961 27 1 -0.4850 0.8400 0.0004 28 1 1.0288 -4.0392 0.9425 29 1 2.7211 -3.4843 0.8564 30 1 2.2174 -5.6337 -0.4408 31 1 2.9632 -4.3323 -1.4018 32 1 1.5489 -7.9617 -3.3572 33 1 2.6337 -6.7556 -2.6167 34 1 3.4608 -9.1113 -2.3477 35 1 3.1721 -8.2925 -0.7969 36 1 0.7749 -9.9478 -3.3095 37 1 0.5675 -11.4542 -2.2658 38 1 -1.0908 -7.8563 -0.8409 39 1 -0.7353 -8.2012 -2.5479 40 1 1.2412 -2.9669 -2.9904 41 1 -0.4510 -3.5218 -2.9043 42 1 -0.6927 -2.6767 -0.6468 43 1 0.0526 -1.3723 -1.6070 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403350377.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:48 Heat of formation + Delta-G solvation = 6.066979 kcal Electronic energy + Delta-G solvation = -22650.036389 eV Core-core repulsion = 19503.088315 eV Total energy + Delta-G solvation = -3146.948074 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 2.25 seconds Orbital eigenvalues (eV) -40.42725 -38.71916 -36.73244 -33.99285 -33.16674 -31.17104 -30.94533 -30.15722 -27.05023 -25.15072 -23.96427 -23.27533 -22.48585 -21.27137 -20.41073 -18.84638 -18.23503 -17.16748 -16.40076 -16.04082 -15.33394 -14.99159 -14.78049 -14.03983 -13.92480 -13.67916 -13.55428 -13.44272 -13.25410 -13.23963 -12.59845 -12.36071 -12.11362 -11.74542 -11.52745 -11.29030 -11.22778 -11.04075 -10.79828 -10.69361 -10.62789 -10.57046 -10.22228 -9.98636 -9.87830 -9.83159 -9.75788 -9.17602 -8.58320 -8.20587 -6.68995 -5.84161 -3.32189 3.01993 3.34732 3.40355 3.41090 3.45260 3.63553 4.41915 4.47722 4.60545 4.65049 4.82666 4.96417 4.99044 5.11017 5.20835 5.33265 5.38483 5.40598 5.55709 5.59513 5.65110 5.75177 5.79155 5.82429 5.89353 5.92309 5.99666 6.08715 6.14299 6.18432 6.20894 6.31027 6.36822 6.40295 6.52798 6.71103 6.90301 7.28764 7.57789 7.71446 7.96487 8.37633 8.62634 9.12667 9.74650 10.32083 11.22979 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.039254 B = 0.004021 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.140044 B = 6962.604420 C = 7288.400174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.005 3.995 3 Si 0.906 3.094 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.259 4.259 8 H 0.066 0.934 9 N -0.591 5.591 10 C 0.130 3.870 11 C 0.088 3.912 12 N -0.596 5.596 13 C 0.512 3.488 14 O -0.557 6.557 15 C -0.105 4.105 16 H 0.095 0.905 17 C -0.109 4.109 18 C -0.086 4.086 19 C -0.141 4.141 20 H 0.097 0.903 21 C -0.183 4.183 22 C -0.146 4.146 23 H 0.102 0.898 24 C -0.072 4.072 25 C 0.086 3.914 26 C 0.159 3.841 27 H 0.256 0.744 28 H 0.023 0.977 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.058 0.942 41 H 0.079 0.921 42 H 0.022 0.978 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.649 -17.601 -2.765 18.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.194 4.194 3 Si 0.736 3.264 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.388 4.388 8 H 0.084 0.916 9 N -0.314 5.314 10 C 0.003 3.997 11 C -0.037 4.037 12 N -0.327 5.327 13 C 0.300 3.700 14 O -0.436 6.436 15 C -0.126 4.126 16 H 0.113 0.887 17 C -0.147 4.147 18 C -0.124 4.124 19 C -0.159 4.159 20 H 0.116 0.884 21 C -0.220 4.220 22 C -0.164 4.164 23 H 0.120 0.880 24 C -0.109 4.109 25 C -0.038 4.038 26 C 0.033 3.967 27 H 0.066 0.934 28 H 0.041 0.959 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.113 0.887 37 H 0.108 0.892 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.077 0.923 41 H 0.098 0.902 42 H 0.041 0.959 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 4.006 -17.395 -3.104 18.119 hybrid contribution 0.442 0.874 0.164 0.993 sum 4.449 -16.521 -2.941 17.360 Atomic orbital electron populations 1.69981 1.05322 1.25846 1.53438 1.25132 0.95348 0.98546 1.00390 0.86320 0.78850 0.83100 0.78148 1.20921 1.21566 1.20824 1.19147 0.91760 0.84267 1.43648 0.91593 1.43962 1.34378 1.02235 1.50805 1.21284 0.98418 0.87490 0.92513 1.22427 0.87909 1.00396 0.92952 1.48066 1.31125 1.07271 1.46280 1.20542 0.83566 0.85327 0.80561 1.90631 1.25465 1.87114 1.40398 1.21330 0.97428 0.92698 1.01159 0.88681 1.21540 0.96325 0.98371 0.98423 1.20847 0.96862 0.94197 1.00445 1.21837 0.91307 1.00692 1.02089 0.88450 1.23124 1.04773 0.98974 0.95089 1.22245 0.96265 0.97334 1.00598 0.88016 1.20880 0.96340 0.90733 1.02988 1.22503 0.99645 0.83557 0.98080 1.21193 0.88735 0.98115 0.88672 0.93370 0.95935 0.91534 0.90712 0.91741 0.91293 0.91064 0.91250 0.91090 0.88674 0.89178 0.91261 0.90402 0.92342 0.90236 0.95938 0.88183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.83 11.10 55.49 0.62 -25.22 16 2 C 0.00 0.13 4.97 -17.43 -0.09 0.05 16 3 Si 0.91 21.21 29.58 -169.99 -5.03 16.18 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 7 C -0.26 -6.88 9.58 -15.06 -0.14 -7.03 16 8 H 0.07 1.70 7.87 -52.49 -0.41 1.29 16 9 N -0.59 -14.46 2.96 -172.04 -0.51 -14.97 16 10 C 0.13 2.58 6.67 -3.60 -0.02 2.56 16 11 C 0.09 1.42 6.08 -3.60 -0.02 1.40 16 12 N -0.60 -10.89 2.95 -172.49 -0.51 -11.40 16 13 C 0.51 9.01 6.82 -10.99 -0.07 8.93 16 14 O -0.56 -11.61 15.33 5.55 0.09 -11.53 16 15 C -0.10 -1.38 1.63 -91.68 -0.15 -1.53 16 16 H 0.10 1.18 6.24 -51.93 -0.32 0.85 16 17 C -0.11 -1.21 4.89 -26.64 -0.13 -1.34 16 18 C -0.09 -0.77 5.93 -27.27 -0.16 -0.93 16 19 C -0.14 -1.26 6.00 -91.93 -0.55 -1.82 16 20 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 21 C -0.18 -1.66 9.67 -26.75 -0.26 -1.92 16 22 C -0.15 -1.47 6.18 -90.89 -0.56 -2.03 16 23 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 24 C -0.07 -0.90 4.74 -26.92 -0.13 -1.03 16 25 C 0.09 1.76 6.60 -3.60 -0.02 1.73 16 26 C 0.16 3.84 5.49 -3.60 -0.02 3.82 16 27 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.07 1.24 7.93 -51.93 -0.41 0.82 16 30 H 0.07 0.97 5.39 -51.93 -0.28 0.69 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.07 0.80 7.11 -51.93 -0.37 0.43 16 33 H 0.07 0.81 7.71 -51.93 -0.40 0.41 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.09 0.91 7.26 -51.93 -0.38 0.54 16 37 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.08 1.08 7.59 -51.93 -0.39 0.69 16 40 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.08 1.65 6.99 -51.93 -0.36 1.29 16 42 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.10 2.66 5.99 -51.93 -0.31 2.35 16 LS Contribution 328.33 15.07 4.95 4.95 Total: -1.00 -30.48 328.33 -9.74 -40.22 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -7.01 Total: 0.89 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: -2.34 Total: 0.87 kcal Atomic # 7 Polarization: -51.18 SS G_CDS: -0.40 Total: -51.59 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.09 Total: -11.53 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.48 -9.74 -40.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403350377.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.290 kcal (2) G-P(sol) polarization free energy of solvation -30.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.25 seconds