Wall clock time and date at job start Tue Mar 31 2020 00:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 120.00227 * 2 1 4 4 H 1.48503 * 109.47247 * 239.99944 * 3 2 1 5 5 H 1.48506 * 109.47137 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47618 * 119.99744 * 3 2 1 7 7 C 1.38818 * 119.99905 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99615 * 194.37823 * 7 2 1 9 9 N 1.36935 * 119.99856 * 14.38354 * 7 2 1 10 10 C 1.46959 * 120.59269 * 209.56667 * 9 7 2 11 11 C 1.53368 * 108.63765 * 235.24543 * 10 9 7 12 12 N 1.46961 * 108.63331 * 310.57639 * 11 10 9 13 13 C 1.34780 * 120.59153 * 234.94534 * 12 11 10 14 14 O 1.21286 * 119.99706 * 175.87181 * 13 12 11 15 15 C 1.50694 * 120.00281 * 355.88352 * 13 12 11 16 16 H 1.08998 * 109.61603 * 39.23858 * 15 13 12 17 17 C 1.53300 * 109.61349 * 278.87967 * 15 13 12 18 18 C 1.52878 * 108.59080 * 165.82807 * 17 15 13 19 19 C 1.52072 * 110.51054 * 54.88539 * 18 17 15 20 20 H 1.09001 * 114.63746 * 194.36850 * 19 18 17 21 21 C 1.52307 * 119.83944 * 49.55929 * 19 18 17 22 22 C 1.52059 * 120.02422 * 338.30731 * 19 18 17 23 23 H 1.09005 * 117.25366 * 216.65986 * 22 19 18 24 24 C 1.52760 * 120.59320 * 5.09972 * 22 19 18 25 25 C 1.46959 * 118.81173 * 55.22413 * 12 11 10 26 26 C 1.46961 * 120.59558 * 29.58621 * 9 7 2 27 27 H 0.96998 * 120.00101 * 359.97438 * 1 2 3 28 28 H 1.09007 * 109.61179 * 115.49833 * 10 9 7 29 29 H 1.09003 * 109.61370 * 354.99412 * 10 9 7 30 30 H 1.09003 * 109.60993 * 190.82887 * 11 10 9 31 31 H 1.08999 * 109.74926 * 70.40432 * 11 10 9 32 32 H 1.09002 * 109.62277 * 285.55599 * 17 15 13 33 33 H 1.09000 * 109.62352 * 46.09850 * 17 15 13 34 34 H 1.08995 * 109.27329 * 175.15521 * 18 17 15 35 35 H 1.08997 * 109.26759 * 294.62542 * 18 17 15 36 36 H 1.09001 * 117.53891 * 357.55204 * 21 19 18 37 37 H 1.08997 * 117.53800 * 142.72555 * 21 19 18 38 38 H 1.09000 * 109.51986 * 218.57832 * 24 22 19 39 39 H 1.08993 * 109.21640 * 98.98191 * 24 22 19 40 40 H 1.09007 * 109.61179 * 64.52086 * 25 12 11 41 41 H 1.09003 * 109.61370 * 185.02507 * 25 12 11 42 42 H 1.09006 * 109.61191 * 244.49784 * 26 9 7 43 43 H 1.09003 * 109.61144 * 5.00590 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0648 -1.2167 0.2328 9 7 1.3577 -2.3696 -0.2935 10 6 1.8050 -3.6433 0.2874 11 6 2.0721 -4.6347 -0.8518 12 7 0.9123 -4.6364 -1.7544 13 6 0.2738 -5.7864 -2.0485 14 8 -0.7266 -5.7663 -2.7340 15 6 0.8025 -7.0970 -1.5254 16 1 1.1627 -6.9652 -0.5051 17 6 1.9508 -7.5816 -2.4180 18 6 2.6962 -8.6997 -1.6890 19 6 1.7342 -9.8056 -1.2841 20 1 2.1337 -10.5112 -0.5555 21 6 0.7691 -10.3840 -2.3106 22 6 0.2475 -9.5124 -1.1578 23 1 -0.2946 -10.0169 -0.3579 24 6 -0.3108 -8.1444 -1.5457 25 6 0.4650 -3.3628 -2.3353 26 6 0.1979 -2.3714 -1.1961 27 1 -0.4850 0.8400 0.0004 28 1 1.0288 -4.0392 0.9425 29 1 2.7211 -3.4843 0.8564 30 1 2.2174 -5.6337 -0.4408 31 1 2.9632 -4.3323 -1.4018 32 1 1.5489 -7.9617 -3.3572 33 1 2.6337 -6.7556 -2.6167 34 1 3.4608 -9.1113 -2.3477 35 1 3.1721 -8.2925 -0.7969 36 1 0.7749 -9.9478 -3.3095 37 1 0.5675 -11.4542 -2.2658 38 1 -1.0908 -7.8563 -0.8409 39 1 -0.7353 -8.2012 -2.5479 40 1 1.2412 -2.9669 -2.9904 41 1 -0.4510 -3.5218 -2.9043 42 1 -0.6927 -2.6767 -0.6468 43 1 0.0526 -1.3723 -1.6070 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403350377.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:46 Heat of formation + Delta-G solvation = -10.876488 kcal Electronic energy + Delta-G solvation = -22650.771113 eV Core-core repulsion = 19503.088315 eV Total energy + Delta-G solvation = -3147.682798 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.62492 -39.84227 -38.37439 -35.69331 -34.25970 -33.03107 -31.98695 -31.63324 -28.78766 -26.33702 -25.37596 -24.67741 -23.94322 -22.05827 -21.96416 -20.21555 -19.28841 -18.75714 -17.78691 -17.22328 -16.73614 -16.71569 -16.23588 -15.49500 -15.30863 -15.07904 -14.88028 -14.78931 -14.77446 -14.31595 -13.85252 -13.48412 -13.39148 -13.15546 -12.97047 -12.65391 -12.53588 -12.39428 -12.33483 -12.14749 -12.02200 -11.94959 -11.79806 -11.68046 -11.47465 -10.66639 -10.62394 -10.55420 -10.50590 -9.81880 -8.65122 -7.88184 -5.39979 1.48597 1.50928 1.57656 1.62804 2.04434 2.50890 2.88403 3.27167 3.44276 3.58410 3.76532 3.79445 3.96675 4.06110 4.14718 4.20993 4.24502 4.31810 4.38000 4.45037 4.55479 4.59558 4.64553 4.69533 4.75839 4.80862 4.91135 4.95675 5.04645 5.06007 5.16897 5.20178 5.23811 5.29057 5.37346 5.39099 5.42975 5.45795 5.60517 5.68143 6.35596 6.53264 7.09008 7.19250 7.78161 8.32225 9.16819 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.039254 B = 0.004021 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.140044 B = 6962.604420 C = 7288.400174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.051 4.051 3 Si 0.972 3.028 4 H -0.276 1.276 5 H -0.298 1.298 6 H -0.273 1.273 7 C -0.265 4.265 8 H 0.077 0.923 9 N -0.609 5.609 10 C 0.124 3.876 11 C 0.099 3.901 12 N -0.601 5.601 13 C 0.507 3.493 14 O -0.596 6.596 15 C -0.095 4.095 16 H 0.112 0.888 17 C -0.105 4.105 18 C -0.083 4.083 19 C -0.131 4.131 20 H 0.117 0.883 21 C -0.182 4.182 22 C -0.157 4.157 23 H 0.112 0.888 24 C -0.069 4.069 25 C 0.100 3.900 26 C 0.171 3.829 27 H 0.250 0.750 28 H 0.013 0.987 29 H 0.082 0.918 30 H 0.117 0.883 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.104 0.896 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.066 0.934 41 H 0.070 0.930 42 H -0.012 1.012 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.432 -19.657 -2.287 21.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.246 4.246 3 Si 0.800 3.200 4 H -0.202 1.202 5 H -0.225 1.225 6 H -0.198 1.198 7 C -0.395 4.395 8 H 0.095 0.905 9 N -0.332 5.332 10 C -0.002 4.002 11 C -0.025 4.025 12 N -0.332 5.332 13 C 0.298 3.702 14 O -0.477 6.477 15 C -0.116 4.116 16 H 0.129 0.871 17 C -0.143 4.143 18 C -0.121 4.121 19 C -0.149 4.149 20 H 0.135 0.865 21 C -0.219 4.219 22 C -0.175 4.175 23 H 0.130 0.870 24 C -0.107 4.107 25 C -0.024 4.024 26 C 0.045 3.955 27 H 0.059 0.941 28 H 0.031 0.969 29 H 0.101 0.899 30 H 0.134 0.866 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.123 0.877 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.007 0.993 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.832 -19.494 -2.613 20.821 hybrid contribution -0.473 1.471 0.022 1.545 sum 6.359 -18.023 -2.591 19.287 Atomic orbital electron populations 1.70159 1.06944 1.26059 1.55304 1.25928 0.96018 1.01848 1.00818 0.85273 0.77422 0.78804 0.78499 1.20160 1.22476 1.19813 1.19562 0.92376 0.85185 1.42340 0.90547 1.44216 1.34081 1.03508 1.51419 1.21510 0.98572 0.86224 0.93882 1.22446 0.87204 1.01491 0.91319 1.48165 1.31859 1.06571 1.46639 1.21428 0.82720 0.86429 0.79659 1.90614 1.27232 1.87736 1.42140 1.21370 0.98285 0.89943 1.02043 0.87065 1.21543 0.95485 0.99338 0.97904 1.20886 0.96812 0.93242 1.01115 1.21965 0.90325 1.00727 1.01905 0.86524 1.23169 1.04704 0.99576 0.94464 1.22178 0.97728 0.95917 1.01713 0.87020 1.20810 0.96043 0.92384 1.01502 1.22092 0.99646 0.84148 0.96543 1.20860 0.87897 0.97425 0.89362 0.94070 0.96885 0.89919 0.86555 0.90475 0.92204 0.90846 0.89628 0.89544 0.89578 0.87727 0.92552 0.92510 0.91614 0.91124 0.99345 0.91169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.58 11.10 21.65 0.24 -55.34 16 2 C -0.05 -2.79 4.97 84.86 0.42 -2.36 16 3 Si 0.97 43.88 29.58 68.60 2.03 45.91 16 4 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.30 -13.75 7.11 99.48 0.71 -13.05 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.26 -14.03 9.58 84.04 0.81 -13.22 16 8 H 0.08 3.82 7.87 -2.91 -0.02 3.80 16 9 N -0.61 -29.89 2.96 -698.21 -2.07 -31.96 16 10 C 0.12 4.73 6.67 86.42 0.58 5.31 16 11 C 0.10 2.92 6.08 86.41 0.53 3.45 16 12 N -0.60 -21.44 2.95 -818.03 -2.41 -23.86 16 13 C 0.51 17.56 6.82 87.65 0.60 18.16 16 14 O -0.60 -25.38 15.33 -3.05 -0.05 -25.43 16 15 C -0.10 -2.32 1.63 -11.48 -0.02 -2.34 16 16 H 0.11 2.36 6.24 -2.39 -0.01 2.35 16 17 C -0.10 -2.03 4.89 30.65 0.15 -1.88 16 18 C -0.08 -1.13 5.93 30.25 0.18 -0.95 16 19 C -0.13 -1.84 6.00 -11.64 -0.07 -1.91 16 20 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 21 C -0.18 -2.84 9.67 30.58 0.30 -2.54 16 22 C -0.16 -2.79 6.18 -10.97 -0.07 -2.86 16 23 H 0.11 1.77 8.14 -2.38 -0.02 1.75 16 24 C -0.07 -1.69 4.74 30.47 0.14 -1.54 16 25 C 0.10 4.19 6.60 86.42 0.57 4.76 16 26 C 0.17 8.59 5.49 86.41 0.47 9.06 16 27 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 28 H 0.01 0.53 8.14 -2.38 -0.02 0.51 16 29 H 0.08 2.87 7.93 -2.39 -0.02 2.85 16 30 H 0.12 2.50 5.39 -2.39 -0.01 2.49 16 31 H 0.08 2.16 8.14 -2.39 -0.02 2.15 16 32 H 0.06 1.28 7.11 -2.39 -0.02 1.26 16 33 H 0.07 1.41 7.71 -2.39 -0.02 1.39 16 34 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.09 1.51 7.26 -2.39 -0.02 1.49 16 37 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.06 1.60 7.59 -2.39 -0.02 1.58 16 40 H 0.07 2.64 8.14 -2.38 -0.02 2.62 16 41 H 0.07 3.05 6.99 -2.39 -0.02 3.04 16 42 H -0.01 -0.64 8.14 -2.38 -0.02 -0.66 16 43 H 0.07 3.92 5.99 -2.39 -0.01 3.91 16 Total: -1.00 -68.18 328.33 3.31 -64.87 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: 0.98 Total: 14.67 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: 4.58 Total: 11.14 kcal Atomic # 7 Polarization: -106.91 SS G_CDS: -4.24 Total: -111.15 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -0.05 Total: -25.43 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -68.18 3.31 -64.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403350377.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.994 kcal (2) G-P(sol) polarization free energy of solvation -68.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds