Wall clock time and date at job start Tue Mar 31 2020 00:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86789 * 120.00300 * 2 1 4 4 H 1.48507 * 109.46992 * 270.00283 * 3 2 1 5 5 H 1.48501 * 109.47201 * 30.00080 * 3 2 1 6 6 H 1.48497 * 109.47261 * 150.00109 * 3 2 1 7 7 C 1.38811 * 119.99498 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00122 * 196.76972 * 7 2 1 9 9 N 1.36940 * 120.00268 * 16.77443 * 7 2 1 10 10 C 1.46968 * 120.59439 * 213.59905 * 9 7 2 11 11 C 1.53362 * 108.63527 * 235.20603 * 10 9 7 12 12 N 1.46973 * 108.63605 * 310.57439 * 11 10 9 13 13 C 1.34773 * 120.59353 * 235.20663 * 12 11 10 14 14 O 1.21281 * 120.00298 * 4.93596 * 13 12 11 15 15 C 1.50696 * 119.99639 * 184.93790 * 13 12 11 16 16 H 1.08995 * 109.62178 * 33.28051 * 15 13 12 17 17 C 1.53296 * 109.61861 * 272.91840 * 15 13 12 18 18 C 1.52875 * 108.58505 * 165.82542 * 17 15 13 19 19 C 1.52713 * 110.15063 * 54.52588 * 18 17 15 20 20 H 1.09002 * 114.91556 * 127.84404 * 19 18 17 21 21 C 1.53654 * 116.02803 * 269.79504 * 19 18 17 22 22 C 1.52299 * 120.56335 * 338.47922 * 19 18 17 23 23 H 1.09002 * 115.91039 * 149.31886 * 22 19 18 24 24 C 1.52072 * 120.06788 * 5.29770 * 22 19 18 25 25 C 1.46962 * 118.80810 * 55.47964 * 12 11 10 26 26 C 1.46963 * 120.59209 * 33.58006 * 9 7 2 27 27 H 0.96994 * 119.99535 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.60433 * 115.46054 * 10 9 7 29 29 H 1.09000 * 109.60718 * 354.95526 * 10 9 7 30 30 H 1.09005 * 109.61049 * 190.83404 * 11 10 9 31 31 H 1.09000 * 109.61295 * 70.32465 * 11 10 9 32 32 H 1.09004 * 109.62110 * 46.09990 * 17 15 13 33 33 H 1.09003 * 109.77014 * 285.64992 * 17 15 13 34 34 H 1.09001 * 109.35963 * 294.31644 * 18 17 15 35 35 H 1.09008 * 109.24663 * 174.65861 * 18 17 15 36 36 H 1.08997 * 117.53517 * 4.31318 * 21 19 18 37 37 H 1.09001 * 117.54161 * 219.13346 * 21 19 18 38 38 H 1.09001 * 109.26875 * 98.60879 * 24 22 19 39 39 H 1.09000 * 109.26424 * 218.07267 * 24 22 19 40 40 H 1.09007 * 109.60786 * 64.26947 * 25 12 11 41 41 H 1.09000 * 109.60479 * 184.77469 * 25 12 11 42 42 H 1.08997 * 109.60749 * 244.53772 * 26 9 7 43 43 H 1.08997 * 109.61240 * 5.05472 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0558 -1.2221 0.2704 9 7 1.3692 -2.3630 -0.3412 10 6 1.7371 -3.6359 0.2948 11 6 2.0943 -4.6465 -0.8021 12 7 1.0257 -4.6418 -1.8111 13 6 0.3948 -5.7843 -2.1474 14 8 0.6440 -6.8120 -1.5537 15 6 -0.6203 -5.7846 -3.2612 16 1 -0.3291 -5.0605 -4.0220 17 6 -1.9990 -5.4166 -2.7012 18 6 -2.9246 -5.0771 -3.8696 19 6 -2.9490 -6.2280 -4.8730 20 1 -3.9443 -6.5836 -5.1399 21 6 -1.9012 -6.1665 -5.9952 22 6 -1.8118 -7.2400 -4.9185 23 1 -2.0842 -8.2490 -5.2282 24 6 -0.6991 -7.1828 -3.8835 25 6 0.6616 -3.3699 -2.4511 26 6 0.3006 -2.3582 -1.3502 27 1 -0.4849 0.8400 -0.0004 28 1 0.8954 -4.0104 0.8774 29 1 2.5975 -3.4838 0.9465 30 1 2.1825 -5.6422 -0.3674 31 1 3.0382 -4.3629 -1.2675 32 1 -1.9080 -4.5522 -2.0434 33 1 -2.4074 -6.2594 -2.1436 34 1 -2.5662 -4.1742 -4.3640 35 1 -3.9326 -4.9061 -3.4915 36 1 -1.1729 -5.3563 -5.9607 37 1 -2.2120 -6.4776 -6.9926 38 1 -0.8986 -7.9141 -3.1002 39 1 0.2506 -7.4202 -4.3629 40 1 1.5059 -2.9975 -3.0313 41 1 -0.1965 -3.5224 -3.1057 42 1 -0.6433 -2.6419 -0.8847 43 1 0.2124 -1.3626 -1.7849 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403350384.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:52 Heat of formation + Delta-G solvation = 3.266593 kcal Electronic energy + Delta-G solvation = -22829.723271 eV Core-core repulsion = 19682.653763 eV Total energy + Delta-G solvation = -3147.069508 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -40.40692 -38.67180 -36.72714 -33.90466 -33.18431 -31.26238 -30.82275 -30.14639 -27.08916 -25.23971 -23.71764 -23.12045 -22.54424 -21.39606 -20.42231 -18.84697 -18.23972 -17.25328 -16.23501 -15.95424 -15.04676 -14.92754 -14.72417 -14.44279 -13.88925 -13.77069 -13.52095 -13.34087 -13.31324 -13.18843 -12.56262 -12.31452 -12.05882 -11.63479 -11.53836 -11.37355 -11.10773 -10.99012 -10.84860 -10.77026 -10.56193 -10.49570 -10.25252 -10.08589 -9.83897 -9.82014 -9.72441 -9.18448 -8.59984 -8.22065 -6.66640 -5.88713 -3.37768 3.00318 3.32062 3.39387 3.40443 3.45612 3.66372 4.41969 4.49525 4.66310 4.71539 4.88705 4.99958 5.02156 5.20147 5.26783 5.32434 5.44071 5.45896 5.58071 5.66208 5.76936 5.79474 5.85082 5.88272 5.96303 6.03222 6.04743 6.09983 6.15333 6.18671 6.22583 6.27701 6.33780 6.36998 6.45118 6.80015 6.92557 7.18710 7.36321 7.72589 7.94420 8.37015 8.60035 9.10044 9.71235 10.32135 11.18863 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.025335 B = 0.004719 C = 0.004233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.937871 B = 5932.351477 C = 6612.387085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.010 3.990 3 Si 0.903 3.097 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.262 4.262 8 H 0.065 0.935 9 N -0.589 5.589 10 C 0.132 3.868 11 C 0.094 3.906 12 N -0.596 5.596 13 C 0.515 3.485 14 O -0.560 6.560 15 C -0.106 4.106 16 H 0.090 0.910 17 C -0.108 4.108 18 C -0.088 4.088 19 C -0.148 4.148 20 H 0.100 0.900 21 C -0.185 4.185 22 C -0.137 4.137 23 H 0.099 0.901 24 C -0.070 4.070 25 C 0.078 3.922 26 C 0.163 3.837 27 H 0.255 0.745 28 H 0.023 0.977 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.073 0.927 42 H 0.025 0.975 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.248 -10.196 -10.445 15.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.190 4.190 3 Si 0.733 3.267 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.391 4.391 8 H 0.083 0.917 9 N -0.312 5.312 10 C 0.005 3.995 11 C -0.030 4.030 12 N -0.328 5.328 13 C 0.303 3.697 14 O -0.439 6.439 15 C -0.127 4.127 16 H 0.109 0.891 17 C -0.146 4.146 18 C -0.125 4.125 19 C -0.166 4.166 20 H 0.118 0.882 21 C -0.222 4.222 22 C -0.155 4.155 23 H 0.117 0.883 24 C -0.108 4.108 25 C -0.046 4.046 26 C 0.037 3.963 27 H 0.065 0.935 28 H 0.041 0.959 29 H 0.084 0.916 30 H 0.099 0.901 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.113 0.887 37 H 0.108 0.892 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.092 0.908 42 H 0.043 0.957 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.214 -10.553 -10.097 15.201 hybrid contribution 0.367 1.033 -0.111 1.102 sum -3.847 -9.520 -10.208 14.479 Atomic orbital electron populations 1.70032 1.05386 1.25803 1.52917 1.25193 0.95256 0.98659 0.99869 0.86290 0.79245 0.83434 0.77776 1.21280 1.21679 1.20287 1.19156 0.92413 0.84528 1.43017 0.91740 1.43917 1.41968 1.02946 1.42388 1.21307 0.98496 0.86977 0.92713 1.22202 0.89125 1.00945 0.90687 1.48058 1.36670 1.07698 1.40352 1.20529 0.81699 0.83088 0.84378 1.90616 1.65972 1.32396 1.54937 1.21402 0.95210 0.99414 0.96667 0.89144 1.21526 0.92824 1.02462 0.97784 1.21058 1.00052 0.96466 0.94931 1.22277 0.94500 0.99958 0.99880 0.88176 1.23153 1.02785 1.02202 0.94048 1.21857 0.98577 0.95351 0.99728 0.88329 1.20743 0.97191 0.95827 0.97031 1.22808 0.99810 0.84589 0.97433 1.21138 0.90365 0.97042 0.87796 0.93469 0.95895 0.91577 0.90063 0.92074 0.90708 0.91049 0.91258 0.91142 0.88673 0.89184 0.90128 0.91496 0.91950 0.90839 0.95650 0.89286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.17 11.58 55.49 0.64 -24.52 16 2 C 0.01 0.27 4.88 -17.43 -0.08 0.19 16 3 Si 0.90 20.94 29.59 -169.99 -5.03 15.91 16 4 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.26 -6.94 9.51 -15.06 -0.14 -7.08 16 8 H 0.06 1.69 7.88 -52.48 -0.41 1.28 16 9 N -0.59 -14.33 2.93 -171.77 -0.50 -14.83 16 10 C 0.13 2.80 6.67 -3.60 -0.02 2.78 16 11 C 0.09 1.77 6.60 -3.60 -0.02 1.75 16 12 N -0.60 -10.85 2.94 -172.21 -0.51 -11.35 16 13 C 0.52 9.03 6.76 -10.99 -0.07 8.95 16 14 O -0.56 -11.35 15.41 5.56 0.09 -11.26 16 15 C -0.11 -1.44 1.39 -91.49 -0.13 -1.57 16 16 H 0.09 1.16 5.58 -51.93 -0.29 0.87 16 17 C -0.11 -1.40 4.89 -26.64 -0.13 -1.53 16 18 C -0.09 -0.93 5.83 -26.94 -0.16 -1.09 16 19 C -0.15 -1.46 6.19 -90.79 -0.56 -2.02 16 20 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 21 C -0.18 -1.75 9.65 -26.74 -0.26 -2.01 16 22 C -0.14 -1.41 6.01 -91.80 -0.55 -1.97 16 23 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 24 C -0.07 -0.88 4.93 -27.08 -0.13 -1.01 16 25 C 0.08 1.38 6.24 -3.37 -0.02 1.36 16 26 C 0.16 3.64 5.49 -3.37 -0.02 3.62 16 27 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.07 1.35 7.93 -51.93 -0.41 0.93 16 30 H 0.08 1.50 6.99 -51.93 -0.36 1.14 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.07 1.09 7.66 -51.93 -0.40 0.69 16 33 H 0.07 0.95 8.05 -51.93 -0.42 0.53 16 34 H 0.07 0.72 8.06 -51.93 -0.42 0.31 16 35 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 36 H 0.09 0.93 7.27 -51.93 -0.38 0.56 16 37 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.08 1.11 7.66 -51.93 -0.40 0.71 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.06 1.10 8.14 -51.92 -0.42 0.68 16 41 H 0.07 1.10 5.15 -51.93 -0.27 0.83 16 42 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.09 2.17 6.40 -51.93 -0.33 1.84 16 LS Contribution 329.03 15.07 4.96 4.96 Total: -1.00 -29.77 329.03 -9.69 -39.46 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -7.03 Total: 1.29 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: -2.31 Total: 0.36 kcal Atomic # 7 Polarization: -50.34 SS G_CDS: -0.37 Total: -50.71 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.09 Total: -11.26 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.03 Total: 15.91 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.77 -9.69 -39.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403350384.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.722 kcal (2) G-P(sol) polarization free energy of solvation -29.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds