Wall clock time and date at job start Tue Mar 31 2020 00:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86789 * 120.00300 * 2 1 4 4 H 1.48507 * 109.46992 * 270.00283 * 3 2 1 5 5 H 1.48501 * 109.47201 * 30.00080 * 3 2 1 6 6 H 1.48497 * 109.47261 * 150.00109 * 3 2 1 7 7 C 1.38811 * 119.99498 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00122 * 196.76972 * 7 2 1 9 9 N 1.36940 * 120.00268 * 16.77443 * 7 2 1 10 10 C 1.46968 * 120.59439 * 213.59905 * 9 7 2 11 11 C 1.53362 * 108.63527 * 235.20603 * 10 9 7 12 12 N 1.46973 * 108.63605 * 310.57439 * 11 10 9 13 13 C 1.34773 * 120.59353 * 235.20663 * 12 11 10 14 14 O 1.21281 * 120.00298 * 4.93596 * 13 12 11 15 15 C 1.50696 * 119.99639 * 184.93790 * 13 12 11 16 16 H 1.08995 * 109.62178 * 33.28051 * 15 13 12 17 17 C 1.53296 * 109.61861 * 272.91840 * 15 13 12 18 18 C 1.52875 * 108.58505 * 165.82542 * 17 15 13 19 19 C 1.52713 * 110.15063 * 54.52588 * 18 17 15 20 20 H 1.09002 * 114.91556 * 127.84404 * 19 18 17 21 21 C 1.53654 * 116.02803 * 269.79504 * 19 18 17 22 22 C 1.52299 * 120.56335 * 338.47922 * 19 18 17 23 23 H 1.09002 * 115.91039 * 149.31886 * 22 19 18 24 24 C 1.52072 * 120.06788 * 5.29770 * 22 19 18 25 25 C 1.46962 * 118.80810 * 55.47964 * 12 11 10 26 26 C 1.46963 * 120.59209 * 33.58006 * 9 7 2 27 27 H 0.96994 * 119.99535 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.60433 * 115.46054 * 10 9 7 29 29 H 1.09000 * 109.60718 * 354.95526 * 10 9 7 30 30 H 1.09005 * 109.61049 * 190.83404 * 11 10 9 31 31 H 1.09000 * 109.61295 * 70.32465 * 11 10 9 32 32 H 1.09004 * 109.62110 * 46.09990 * 17 15 13 33 33 H 1.09003 * 109.77014 * 285.64992 * 17 15 13 34 34 H 1.09001 * 109.35963 * 294.31644 * 18 17 15 35 35 H 1.09008 * 109.24663 * 174.65861 * 18 17 15 36 36 H 1.08997 * 117.53517 * 4.31318 * 21 19 18 37 37 H 1.09001 * 117.54161 * 219.13346 * 21 19 18 38 38 H 1.09001 * 109.26875 * 98.60879 * 24 22 19 39 39 H 1.09000 * 109.26424 * 218.07267 * 24 22 19 40 40 H 1.09007 * 109.60786 * 64.26947 * 25 12 11 41 41 H 1.09000 * 109.60479 * 184.77469 * 25 12 11 42 42 H 1.08997 * 109.60749 * 244.53772 * 26 9 7 43 43 H 1.08997 * 109.61240 * 5.05472 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0558 -1.2221 0.2704 9 7 1.3692 -2.3630 -0.3412 10 6 1.7371 -3.6359 0.2948 11 6 2.0943 -4.6465 -0.8021 12 7 1.0257 -4.6418 -1.8111 13 6 0.3948 -5.7843 -2.1474 14 8 0.6440 -6.8120 -1.5537 15 6 -0.6203 -5.7846 -3.2612 16 1 -0.3291 -5.0605 -4.0220 17 6 -1.9990 -5.4166 -2.7012 18 6 -2.9246 -5.0771 -3.8696 19 6 -2.9490 -6.2280 -4.8730 20 1 -3.9443 -6.5836 -5.1399 21 6 -1.9012 -6.1665 -5.9952 22 6 -1.8118 -7.2400 -4.9185 23 1 -2.0842 -8.2490 -5.2282 24 6 -0.6991 -7.1828 -3.8835 25 6 0.6616 -3.3699 -2.4511 26 6 0.3006 -2.3582 -1.3502 27 1 -0.4849 0.8400 -0.0004 28 1 0.8954 -4.0104 0.8774 29 1 2.5975 -3.4838 0.9465 30 1 2.1825 -5.6422 -0.3674 31 1 3.0382 -4.3629 -1.2675 32 1 -1.9080 -4.5522 -2.0434 33 1 -2.4074 -6.2594 -2.1436 34 1 -2.5662 -4.1742 -4.3640 35 1 -3.9326 -4.9061 -3.4915 36 1 -1.1729 -5.3563 -5.9607 37 1 -2.2120 -6.4776 -6.9926 38 1 -0.8986 -7.9141 -3.1002 39 1 0.2506 -7.4202 -4.3629 40 1 1.5059 -2.9975 -3.0313 41 1 -0.1965 -3.5224 -3.1057 42 1 -0.6433 -2.6419 -0.8847 43 1 0.2124 -1.3626 -1.7849 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403350384.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:51 Heat of formation + Delta-G solvation = -12.503070 kcal Electronic energy + Delta-G solvation = -22830.407095 eV Core-core repulsion = 19682.653763 eV Total energy + Delta-G solvation = -3147.753332 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.64579 -39.81950 -38.36676 -35.62562 -34.33932 -33.03650 -31.92189 -31.69653 -28.81193 -26.47531 -25.31318 -24.52144 -23.88821 -22.42243 -21.79725 -20.24886 -19.35661 -18.79082 -17.73646 -17.36207 -16.68832 -16.32450 -16.15792 -15.62458 -15.38473 -15.24328 -14.95538 -14.84028 -14.65688 -14.44168 -13.93235 -13.43587 -13.32829 -13.27349 -12.93896 -12.67327 -12.55042 -12.45291 -12.24583 -12.10487 -12.05923 -11.98710 -11.85776 -11.66399 -11.49374 -10.73583 -10.61459 -10.60352 -10.44046 -9.82075 -8.61671 -7.90551 -5.44134 1.48503 1.50131 1.58883 1.59561 2.03485 2.50417 2.88136 3.24254 3.45233 3.57956 3.63717 3.79595 3.97785 4.08907 4.10734 4.18840 4.21948 4.33507 4.35878 4.45159 4.53950 4.54662 4.61392 4.67345 4.74354 4.79641 4.84219 4.94204 5.01692 5.04103 5.12105 5.18601 5.21813 5.27026 5.29720 5.37373 5.44005 5.50430 5.59495 5.64622 6.36814 6.48797 7.10242 7.16244 7.75512 8.33136 9.14376 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.025335 B = 0.004719 C = 0.004233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.937871 B = 5932.351477 C = 6612.387085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.037 4.037 3 Si 0.968 3.032 4 H -0.280 1.280 5 H -0.296 1.296 6 H -0.270 1.270 7 C -0.273 4.273 8 H 0.065 0.935 9 N -0.606 5.606 10 C 0.133 3.867 11 C 0.104 3.896 12 N -0.602 5.602 13 C 0.512 3.488 14 O -0.589 6.589 15 C -0.098 4.098 16 H 0.106 0.894 17 C -0.105 4.105 18 C -0.085 4.085 19 C -0.149 4.149 20 H 0.116 0.884 21 C -0.176 4.176 22 C -0.144 4.144 23 H 0.112 0.888 24 C -0.066 4.066 25 C 0.095 3.905 26 C 0.170 3.830 27 H 0.253 0.747 28 H 0.005 0.995 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.107 0.893 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.104 0.896 42 H 0.001 0.999 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.235 -10.407 -12.463 16.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.234 4.234 3 Si 0.796 3.204 4 H -0.206 1.206 5 H -0.222 1.222 6 H -0.195 1.195 7 C -0.403 4.403 8 H 0.083 0.917 9 N -0.330 5.330 10 C 0.006 3.994 11 C -0.020 4.020 12 N -0.333 5.333 13 C 0.302 3.698 14 O -0.470 6.470 15 C -0.119 4.119 16 H 0.124 0.876 17 C -0.143 4.143 18 C -0.122 4.122 19 C -0.167 4.167 20 H 0.134 0.866 21 C -0.213 4.213 22 C -0.162 4.162 23 H 0.130 0.870 24 C -0.103 4.103 25 C -0.029 4.029 26 C 0.044 3.956 27 H 0.062 0.938 28 H 0.023 0.977 29 H 0.090 0.910 30 H 0.102 0.898 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.111 0.889 37 H 0.125 0.875 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.122 0.878 42 H 0.019 0.981 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.192 -10.785 -12.129 16.763 hybrid contribution 0.358 1.047 0.606 1.262 sum -3.835 -9.738 -11.523 15.566 Atomic orbital electron populations 1.70169 1.06763 1.26266 1.54221 1.25908 0.95950 1.01600 0.99919 0.85276 0.78057 0.79304 0.77805 1.20635 1.22246 1.19523 1.19452 0.92662 0.85567 1.42640 0.91718 1.44183 1.42151 1.03335 1.43337 1.21346 0.97929 0.86525 0.93553 1.22014 0.89805 1.00025 0.90190 1.48154 1.36686 1.08156 1.40347 1.21234 0.81580 0.82226 0.84746 1.90600 1.66842 1.33364 1.56177 1.21434 0.94180 1.00872 0.95463 0.87619 1.21486 0.93000 1.01279 0.98530 1.21052 0.99854 0.97141 0.94143 1.22331 0.95290 0.99313 0.99813 0.86623 1.23229 1.02148 1.01348 0.94558 1.21819 0.98109 0.96515 0.99752 0.87018 1.20675 0.98261 0.94287 0.97115 1.22588 1.01310 0.83085 0.95879 1.20973 0.89045 0.97160 0.88452 0.93798 0.97727 0.91042 0.89806 0.90969 0.92659 0.91827 0.90714 0.90194 0.88869 0.87497 0.91869 0.91543 0.91091 0.87789 0.98102 0.91573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.96 11.58 21.65 0.25 -52.71 16 2 C -0.04 -1.98 4.88 84.86 0.41 -1.57 16 3 Si 0.97 43.07 29.59 68.60 2.03 45.10 16 4 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 5 H -0.30 -13.33 7.11 99.48 0.71 -12.63 16 6 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 7 C -0.27 -14.56 9.51 84.03 0.80 -13.76 16 8 H 0.07 3.38 7.88 -2.91 -0.02 3.36 16 9 N -0.61 -29.81 2.93 -697.35 -2.05 -31.86 16 10 C 0.13 5.71 6.67 86.41 0.58 6.29 16 11 C 0.10 3.84 6.60 86.41 0.57 4.41 16 12 N -0.60 -21.47 2.94 -817.15 -2.40 -23.87 16 13 C 0.51 17.60 6.76 87.66 0.59 18.19 16 14 O -0.59 -23.78 15.41 -3.03 -0.05 -23.82 16 15 C -0.10 -2.55 1.39 -11.36 -0.02 -2.57 16 16 H 0.11 2.42 5.58 -2.39 -0.01 2.41 16 17 C -0.10 -2.62 4.89 30.65 0.15 -2.47 16 18 C -0.08 -1.61 5.83 30.46 0.18 -1.43 16 19 C -0.15 -2.50 6.19 -10.90 -0.07 -2.56 16 20 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 21 C -0.18 -2.73 9.65 30.59 0.30 -2.44 16 22 C -0.14 -2.59 6.01 -11.56 -0.07 -2.66 16 23 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 24 C -0.07 -1.54 4.93 30.37 0.15 -1.39 16 25 C 0.10 3.27 6.24 86.56 0.54 3.81 16 26 C 0.17 7.68 5.49 86.56 0.48 8.16 16 27 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 28 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 29 H 0.07 2.93 7.93 -2.39 -0.02 2.91 16 30 H 0.08 3.07 6.99 -2.38 -0.02 3.05 16 31 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 32 H 0.05 1.59 7.66 -2.38 -0.02 1.58 16 33 H 0.06 1.67 8.05 -2.39 -0.02 1.65 16 34 H 0.07 1.36 8.06 -2.39 -0.02 1.34 16 35 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 36 H 0.09 1.50 7.27 -2.39 -0.02 1.49 16 37 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.06 1.70 7.66 -2.39 -0.02 1.68 16 39 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 41 H 0.10 2.92 5.15 -2.39 -0.01 2.90 16 42 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 43 H 0.07 3.29 6.40 -2.39 -0.02 3.27 16 Total: -1.00 -64.03 329.03 3.35 -60.67 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: 0.98 Total: 16.48 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: 4.59 Total: 10.01 kcal Atomic # 7 Polarization: -104.24 SS G_CDS: -4.20 Total: -108.44 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: -0.05 Total: -23.82 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -64.03 3.35 -60.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403350384.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.170 kcal (2) G-P(sol) polarization free energy of solvation -64.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds