Wall clock time and date at job start Tue Mar 31 2020 00:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 119.99986 * 2 1 4 4 H 1.48502 * 109.46754 * 275.33536 * 3 2 1 5 5 H 1.48502 * 109.47290 * 155.33602 * 3 2 1 6 6 H 1.48497 * 109.47170 * 35.33358 * 3 2 1 7 7 C 1.38810 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99781 * 35.15829 * 7 2 1 9 9 N 1.36936 * 120.00495 * 215.16139 * 7 2 1 10 10 C 1.46970 * 120.59251 * 27.65718 * 9 7 2 11 11 C 1.53812 * 108.39660 * 124.75767 * 10 9 7 12 12 N 1.46965 * 108.57864 * 49.64322 * 11 10 9 13 13 C 1.34774 * 120.59411 * 124.66909 * 12 11 10 14 14 O 1.21282 * 119.99878 * 179.97438 * 13 12 11 15 15 C 1.50698 * 120.00083 * 359.97354 * 13 12 11 16 16 C 1.53007 * 109.46779 * 180.02562 * 15 13 12 17 17 H 1.08993 * 110.43409 * 56.08966 * 16 15 13 18 18 C 1.54883 * 110.48442 * 293.54457 * 16 15 13 19 19 C 1.54895 * 102.74839 * 203.38258 * 18 16 15 20 20 C 1.54267 * 104.19366 * 37.94224 * 19 18 16 21 21 H 1.08994 * 117.41056 * 196.41200 * 20 19 18 22 22 C 1.53002 * 118.19914 * 41.78407 * 20 19 18 23 23 C 1.53874 * 106.60022 * 336.39426 * 20 19 18 24 24 H 1.09004 * 121.32755 * 221.93710 * 23 20 19 25 25 C 1.46963 * 118.80805 * 304.64328 * 12 11 10 26 26 C 1.46965 * 120.59852 * 207.94139 * 9 7 2 27 27 H 0.96993 * 119.99987 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.61257 * 244.54593 * 10 9 7 29 29 H 1.09007 * 109.60976 * 5.05906 * 10 9 7 30 30 H 1.09004 * 109.74705 * 289.84991 * 11 10 9 31 31 H 1.09006 * 109.53086 * 169.30588 * 11 10 9 32 32 H 1.08998 * 109.47026 * 299.99953 * 15 13 12 33 33 H 1.08999 * 109.46859 * 60.00368 * 15 13 12 34 34 H 1.09001 * 110.75957 * 321.69791 * 18 16 15 35 35 H 1.09003 * 110.75951 * 85.06770 * 18 16 15 36 36 H 1.08995 * 110.48459 * 156.62063 * 19 18 16 37 37 H 1.08993 * 110.48404 * 279.26468 * 19 18 16 38 38 H 1.09008 * 117.45781 * 13.97642 * 22 20 19 39 39 H 1.08995 * 117.46057 * 158.78189 * 22 20 19 40 40 H 1.08997 * 109.61430 * 295.47916 * 25 12 11 41 41 H 1.08998 * 109.60918 * 174.96948 * 25 12 11 42 42 H 1.08999 * 109.60516 * 354.94401 * 26 9 7 43 43 H 1.08994 * 109.60812 * 115.28635 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3849 2.1115 -1.3941 5 1 3.5996 1.4103 0.5842 6 1 1.5086 2.6175 0.8097 7 6 2.0103 -1.2021 0.0005 8 1 1.6180 -2.0524 -0.5377 9 7 3.1922 -1.3101 0.6835 10 6 3.4565 -0.4683 1.8589 11 6 3.8040 -1.3850 3.0442 12 7 4.8335 -2.3402 2.6113 13 6 5.9968 -2.4464 3.2835 14 8 6.8388 -3.2387 2.9170 15 6 6.2513 -1.5807 4.4905 16 6 7.6348 -1.8971 5.0623 17 1 8.4008 -1.7702 4.2974 18 6 7.6699 -3.3373 5.6311 19 6 8.8306 -3.2723 6.6547 20 6 8.6927 -1.8755 7.2948 21 1 9.5501 -1.4892 7.8459 22 6 7.2898 -1.3769 7.6472 23 6 7.9324 -1.0011 6.2823 24 1 8.2298 0.0294 6.0876 25 6 4.5716 -3.1779 1.4325 26 6 4.2218 -2.2653 0.2506 27 1 -0.4850 0.8400 -0.0004 28 1 4.2934 0.1982 1.6509 29 1 2.5687 0.1180 2.0961 30 1 2.9138 -1.9266 3.3642 31 1 4.1862 -0.7843 3.8696 32 1 6.2100 -0.5310 4.1999 33 1 5.4914 -1.7788 5.2464 34 1 6.7302 -3.5796 6.1275 35 1 7.8892 -4.0584 4.8437 36 1 8.7176 -4.0506 7.4094 37 1 9.7912 -3.3669 6.1486 38 1 6.4820 -2.1089 7.6493 39 1 7.2099 -0.5873 8.3942 40 1 3.7361 -3.8472 1.6376 41 1 5.4607 -3.7614 1.1935 42 1 3.8396 -2.8659 -0.5748 43 1 5.1108 -1.7236 -0.0722 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449950359.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:50:48 Heat of formation + Delta-G solvation = 19.968968 kcal Electronic energy + Delta-G solvation = -22383.755858 eV Core-core repulsion = 19237.410619 eV Total energy + Delta-G solvation = -3146.345239 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.31351 -39.13350 -36.97612 -33.93042 -32.56683 -31.56649 -30.74052 -30.16372 -27.35459 -25.52176 -23.68216 -23.28052 -23.16051 -20.78955 -19.83761 -19.23006 -18.47671 -17.25652 -16.60487 -16.02386 -15.64154 -15.35551 -14.73490 -14.47678 -14.29621 -13.86195 -13.62708 -13.43969 -13.15810 -12.83863 -12.61993 -12.52183 -12.16604 -11.99066 -11.67260 -11.45253 -11.12132 -11.03007 -10.91758 -10.83768 -10.68915 -10.48957 -10.35053 -10.17879 -10.14330 -9.74643 -9.50129 -9.33217 -8.73239 -8.22236 -7.01948 -6.11634 -3.33886 2.93315 3.29582 3.34462 3.45367 3.50382 3.53354 4.27423 4.48997 4.50432 4.68488 4.83775 4.84686 4.94914 5.04028 5.20080 5.23514 5.29341 5.43269 5.47302 5.55133 5.60259 5.61755 5.62326 5.78675 5.81881 5.85706 5.90144 5.91785 6.04653 6.07116 6.09748 6.13671 6.25691 6.28300 6.35081 6.49238 6.56821 6.73922 6.94910 7.80250 7.86469 8.22736 8.49774 8.85706 9.63620 10.03903 11.03032 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.029242 B = 0.004214 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.286883 B = 6642.871610 C = 7181.069197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.039 3.961 3 Si 0.836 3.164 4 H -0.292 1.292 5 H -0.256 1.256 6 H -0.293 1.293 7 C -0.274 4.274 8 H 0.082 0.918 9 N -0.600 5.600 10 C 0.131 3.869 11 C 0.085 3.915 12 N -0.601 5.601 13 C 0.510 3.490 14 O -0.555 6.555 15 C -0.131 4.131 16 C -0.043 4.043 17 H 0.086 0.914 18 C -0.122 4.122 19 C -0.097 4.097 20 C -0.165 4.165 21 H 0.105 0.895 22 C -0.155 4.155 23 C -0.165 4.165 24 H 0.110 0.890 25 C 0.096 3.904 26 C 0.132 3.868 27 H 0.263 0.737 28 H 0.033 0.967 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.062 0.938 35 H 0.083 0.917 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.065 0.935 41 H 0.084 0.916 42 H 0.074 0.926 43 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.089 -2.848 13.981 20.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.162 4.162 3 Si 0.663 3.337 4 H -0.220 1.220 5 H -0.180 1.180 6 H -0.220 1.220 7 C -0.402 4.402 8 H 0.100 0.900 9 N -0.324 5.324 10 C 0.004 3.996 11 C -0.039 4.039 12 N -0.333 5.333 13 C 0.299 3.701 14 O -0.434 6.434 15 C -0.171 4.171 16 C -0.062 4.062 17 H 0.105 0.895 18 C -0.159 4.159 19 C -0.135 4.135 20 C -0.184 4.184 21 H 0.123 0.877 22 C -0.191 4.191 23 C -0.183 4.183 24 H 0.128 0.872 25 C -0.028 4.028 26 C 0.006 3.994 27 H 0.073 0.927 28 H 0.051 0.949 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.081 0.919 35 H 0.102 0.898 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.111 0.889 39 H 0.115 0.885 40 H 0.083 0.917 41 H 0.102 0.898 42 H 0.092 0.908 43 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 14.333 -3.196 13.744 20.114 hybrid contribution 0.224 1.306 -0.127 1.331 sum 14.557 -1.889 13.617 20.022 Atomic orbital electron populations 1.70078 1.06179 1.26929 1.49026 1.25248 0.94838 0.97455 0.98692 0.87605 0.82070 0.85882 0.78111 1.21964 1.18047 1.22007 1.18792 0.94731 0.96519 1.30136 0.90007 1.44296 1.16216 1.43558 1.28302 1.21826 0.99411 0.92186 0.86185 1.22585 0.90889 0.91991 0.98454 1.48062 1.16500 1.39450 1.29288 1.20651 0.81296 0.83663 0.84536 1.90617 1.44800 1.39025 1.69006 1.21673 0.98847 1.00474 0.96087 1.21300 0.95849 0.93981 0.95082 0.89524 1.22583 0.97936 0.97093 0.98280 1.21948 0.99272 0.94765 0.97471 1.23149 0.95657 0.96621 1.02928 0.87728 1.23251 0.95878 1.02822 0.97198 1.23568 1.06001 0.98905 0.89816 0.87234 1.22169 1.00975 0.93600 0.86064 1.21349 0.91811 0.91920 0.94360 0.92688 0.94892 0.90488 0.90979 0.90657 0.89025 0.89132 0.91928 0.89830 0.91764 0.91053 0.88851 0.88531 0.91666 0.89761 0.90805 0.95672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.89 13.97 55.49 0.78 -25.11 16 2 C 0.04 1.08 4.85 -17.43 -0.08 0.99 16 3 Si 0.84 20.48 26.44 -169.99 -4.50 15.99 16 4 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 5 H -0.26 -5.92 4.83 56.52 0.27 -5.65 16 6 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 7 C -0.27 -7.37 9.85 -15.06 -0.15 -7.52 16 8 H 0.08 2.35 8.06 -52.48 -0.42 1.92 16 9 N -0.60 -13.74 2.69 -171.76 -0.46 -14.21 16 10 C 0.13 2.66 4.54 -3.36 -0.02 2.65 16 11 C 0.09 1.40 6.52 -3.37 -0.02 1.38 16 12 N -0.60 -10.13 2.95 -172.22 -0.51 -10.63 16 13 C 0.51 8.12 7.48 -10.99 -0.08 8.04 16 14 O -0.56 -10.15 13.91 5.56 0.08 -10.07 16 15 C -0.13 -1.60 3.58 -27.88 -0.10 -1.70 16 16 C -0.04 -0.50 2.42 -88.96 -0.22 -0.72 16 17 H 0.09 1.12 8.02 -51.93 -0.42 0.70 16 18 C -0.12 -1.39 5.16 -24.74 -0.13 -1.52 16 19 C -0.10 -0.93 6.76 -25.07 -0.17 -1.10 16 20 C -0.17 -1.50 6.97 -89.50 -0.62 -2.12 16 21 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 22 C -0.15 -1.35 9.94 -25.42 -0.25 -1.60 16 23 C -0.16 -1.60 6.52 -88.19 -0.57 -2.17 16 24 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 25 C 0.10 1.68 6.59 -3.60 -0.02 1.65 16 26 C 0.13 2.59 6.67 -3.60 -0.02 2.57 16 27 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 28 H 0.03 0.68 6.68 -51.93 -0.35 0.34 16 29 H 0.08 1.67 5.62 -51.92 -0.29 1.38 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.08 0.99 5.91 -51.93 -0.31 0.68 16 32 H 0.09 1.05 7.72 -51.93 -0.40 0.65 16 33 H 0.09 0.99 7.87 -51.93 -0.41 0.58 16 34 H 0.06 0.70 7.29 -51.93 -0.38 0.33 16 35 H 0.08 1.12 7.06 -51.93 -0.37 0.75 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.09 0.83 7.27 -51.92 -0.38 0.46 16 39 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.08 1.44 6.99 -51.93 -0.36 1.08 16 42 H 0.07 1.41 7.93 -51.93 -0.41 0.99 16 43 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 326.74 15.07 4.92 4.92 Total: -1.00 -30.33 326.74 -9.29 -39.62 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -7.14 Total: 0.65 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -2.46 Total: -1.15 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: -0.19 Total: -49.95 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.08 Total: -10.07 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.50 Total: 15.99 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.33 -9.29 -39.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449950359.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.585 kcal (2) G-P(sol) polarization free energy of solvation -30.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds