Wall clock time and date at job start Tue Mar 31 2020 00:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 119.99986 * 2 1 4 4 H 1.48502 * 109.46754 * 275.33536 * 3 2 1 5 5 H 1.48502 * 109.47290 * 155.33602 * 3 2 1 6 6 H 1.48497 * 109.47170 * 35.33358 * 3 2 1 7 7 C 1.38810 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99781 * 35.15829 * 7 2 1 9 9 N 1.36936 * 120.00495 * 215.16139 * 7 2 1 10 10 C 1.46970 * 120.59251 * 27.65718 * 9 7 2 11 11 C 1.53812 * 108.39660 * 124.75767 * 10 9 7 12 12 N 1.46965 * 108.57864 * 49.64322 * 11 10 9 13 13 C 1.34774 * 120.59411 * 124.66909 * 12 11 10 14 14 O 1.21282 * 119.99878 * 179.97438 * 13 12 11 15 15 C 1.50698 * 120.00083 * 359.97354 * 13 12 11 16 16 C 1.53007 * 109.46779 * 180.02562 * 15 13 12 17 17 H 1.08993 * 110.43409 * 56.08966 * 16 15 13 18 18 C 1.54883 * 110.48442 * 293.54457 * 16 15 13 19 19 C 1.54895 * 102.74839 * 203.38258 * 18 16 15 20 20 C 1.54267 * 104.19366 * 37.94224 * 19 18 16 21 21 H 1.08994 * 117.41056 * 196.41200 * 20 19 18 22 22 C 1.53002 * 118.19914 * 41.78407 * 20 19 18 23 23 C 1.53874 * 106.60022 * 336.39426 * 20 19 18 24 24 H 1.09004 * 121.32755 * 221.93710 * 23 20 19 25 25 C 1.46963 * 118.80805 * 304.64328 * 12 11 10 26 26 C 1.46965 * 120.59852 * 207.94139 * 9 7 2 27 27 H 0.96993 * 119.99987 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.61257 * 244.54593 * 10 9 7 29 29 H 1.09007 * 109.60976 * 5.05906 * 10 9 7 30 30 H 1.09004 * 109.74705 * 289.84991 * 11 10 9 31 31 H 1.09006 * 109.53086 * 169.30588 * 11 10 9 32 32 H 1.08998 * 109.47026 * 299.99953 * 15 13 12 33 33 H 1.08999 * 109.46859 * 60.00368 * 15 13 12 34 34 H 1.09001 * 110.75957 * 321.69791 * 18 16 15 35 35 H 1.09003 * 110.75951 * 85.06770 * 18 16 15 36 36 H 1.08995 * 110.48459 * 156.62063 * 19 18 16 37 37 H 1.08993 * 110.48404 * 279.26468 * 19 18 16 38 38 H 1.09008 * 117.45781 * 13.97642 * 22 20 19 39 39 H 1.08995 * 117.46057 * 158.78189 * 22 20 19 40 40 H 1.08997 * 109.61430 * 295.47916 * 25 12 11 41 41 H 1.08998 * 109.60918 * 174.96948 * 25 12 11 42 42 H 1.08999 * 109.60516 * 354.94401 * 26 9 7 43 43 H 1.08994 * 109.60812 * 115.28635 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3849 2.1115 -1.3941 5 1 3.5996 1.4103 0.5842 6 1 1.5086 2.6175 0.8097 7 6 2.0103 -1.2021 0.0005 8 1 1.6180 -2.0524 -0.5377 9 7 3.1922 -1.3101 0.6835 10 6 3.4565 -0.4683 1.8589 11 6 3.8040 -1.3850 3.0442 12 7 4.8335 -2.3402 2.6113 13 6 5.9968 -2.4464 3.2835 14 8 6.8388 -3.2387 2.9170 15 6 6.2513 -1.5807 4.4905 16 6 7.6348 -1.8971 5.0623 17 1 8.4008 -1.7702 4.2974 18 6 7.6699 -3.3373 5.6311 19 6 8.8306 -3.2723 6.6547 20 6 8.6927 -1.8755 7.2948 21 1 9.5501 -1.4892 7.8459 22 6 7.2898 -1.3769 7.6472 23 6 7.9324 -1.0011 6.2823 24 1 8.2298 0.0294 6.0876 25 6 4.5716 -3.1779 1.4325 26 6 4.2218 -2.2653 0.2506 27 1 -0.4850 0.8400 -0.0004 28 1 4.2934 0.1982 1.6509 29 1 2.5687 0.1180 2.0961 30 1 2.9138 -1.9266 3.3642 31 1 4.1862 -0.7843 3.8696 32 1 6.2100 -0.5310 4.1999 33 1 5.4914 -1.7788 5.2464 34 1 6.7302 -3.5796 6.1275 35 1 7.8892 -4.0584 4.8437 36 1 8.7176 -4.0506 7.4094 37 1 9.7912 -3.3669 6.1486 38 1 6.4820 -2.1089 7.6493 39 1 7.2099 -0.5873 8.3942 40 1 3.7361 -3.8472 1.6376 41 1 5.4607 -3.7614 1.1935 42 1 3.8396 -2.8659 -0.5748 43 1 5.1108 -1.7236 -0.0722 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449950359.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:50:46 Heat of formation + Delta-G solvation = 2.984520 kcal Electronic energy + Delta-G solvation = -22384.492359 eV Core-core repulsion = 19237.410619 eV Total energy + Delta-G solvation = -3147.081740 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.40015 -40.17820 -38.49138 -35.59819 -33.79181 -33.23308 -32.11183 -31.10459 -28.94202 -26.69219 -25.00317 -24.68887 -24.35194 -22.29776 -20.61093 -20.32451 -19.69619 -18.72172 -17.91452 -17.33302 -16.87827 -16.72209 -16.36734 -16.01231 -15.42965 -15.32109 -14.87572 -14.56758 -14.43104 -14.27455 -14.15223 -13.80414 -13.49032 -13.34593 -12.79088 -12.64577 -12.52917 -12.33656 -12.16345 -12.09163 -11.92230 -11.85816 -11.74047 -11.55928 -11.38199 -10.84468 -10.72590 -10.66801 -10.37536 -9.82639 -8.85804 -8.23117 -5.42533 1.35786 1.47942 1.53956 1.68987 2.04605 2.44665 2.81251 2.95133 3.37575 3.44107 3.70562 3.73479 3.99373 4.12201 4.12939 4.17715 4.31926 4.35230 4.38566 4.44397 4.48272 4.54826 4.60429 4.65796 4.74054 4.78148 4.81617 4.86496 4.94539 4.97655 5.01501 5.06862 5.14156 5.18301 5.33294 5.39713 5.41317 5.47889 5.54889 5.85389 6.10594 6.52328 6.89761 7.22692 7.61177 8.03960 8.95237 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.029242 B = 0.004214 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.286883 B = 6642.871610 C = 7181.069197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.010 4.010 3 Si 0.901 3.099 4 H -0.305 1.305 5 H -0.232 1.232 6 H -0.291 1.291 7 C -0.267 4.267 8 H 0.048 0.952 9 N -0.613 5.613 10 C 0.124 3.876 11 C 0.097 3.903 12 N -0.607 5.607 13 C 0.508 3.492 14 O -0.581 6.581 15 C -0.125 4.125 16 C -0.043 4.043 17 H 0.068 0.932 18 C -0.122 4.122 19 C -0.096 4.096 20 C -0.166 4.166 21 H 0.117 0.883 22 C -0.146 4.146 23 C -0.170 4.170 24 H 0.119 0.881 25 C 0.105 3.895 26 C 0.133 3.867 27 H 0.264 0.736 28 H 0.039 0.961 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.117 0.883 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.092 0.908 39 H 0.113 0.887 40 H 0.062 0.938 41 H 0.088 0.912 42 H 0.071 0.929 43 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.852 -1.701 16.363 22.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.208 4.208 3 Si 0.728 3.272 4 H -0.234 1.234 5 H -0.156 1.156 6 H -0.218 1.218 7 C -0.396 4.396 8 H 0.066 0.934 9 N -0.338 5.338 10 C -0.002 4.002 11 C -0.027 4.027 12 N -0.339 5.339 13 C 0.299 3.701 14 O -0.462 6.462 15 C -0.165 4.165 16 C -0.061 4.061 17 H 0.086 0.914 18 C -0.159 4.159 19 C -0.134 4.134 20 C -0.184 4.184 21 H 0.135 0.865 22 C -0.183 4.183 23 C -0.188 4.188 24 H 0.137 0.863 25 C -0.019 4.019 26 C 0.007 3.993 27 H 0.073 0.927 28 H 0.056 0.944 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.135 0.865 32 H 0.126 0.874 33 H 0.128 0.872 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.110 0.890 39 H 0.131 0.869 40 H 0.081 0.919 41 H 0.107 0.893 42 H 0.089 0.911 43 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 16.144 -2.051 16.154 22.930 hybrid contribution -0.294 0.819 -0.900 1.252 sum 15.851 -1.233 15.254 22.033 Atomic orbital electron populations 1.70161 1.07757 1.27599 1.51813 1.25745 0.95277 1.00400 0.99414 0.86584 0.81831 0.81536 0.77243 1.23395 1.15572 1.21800 1.18706 0.95831 0.95498 1.29528 0.93378 1.44407 1.15792 1.44419 1.29151 1.21907 0.98895 0.92726 0.86656 1.22458 0.91042 0.91507 0.97685 1.48156 1.17092 1.39490 1.29191 1.21338 0.80251 0.83474 0.85054 1.90616 1.45471 1.40245 1.69854 1.21735 0.99775 1.00327 0.94622 1.21231 0.94939 0.94469 0.95500 0.91376 1.22524 0.98795 0.96561 0.98033 1.21931 0.98412 0.95785 0.97226 1.23216 0.96578 0.95801 1.02800 0.86458 1.23348 0.95399 1.02971 0.96577 1.23517 1.06995 0.99012 0.89239 0.86308 1.21941 1.00986 0.93187 0.85831 1.21410 0.90910 0.91614 0.95385 0.92740 0.94358 0.91887 0.91367 0.86458 0.87409 0.87164 0.91699 0.92446 0.90945 0.91205 0.88999 0.86895 0.91934 0.89331 0.91092 0.95400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.79 13.97 21.65 0.30 -55.48 16 2 C -0.01 -0.58 4.85 84.86 0.41 -0.17 16 3 Si 0.90 42.44 26.44 68.60 1.81 44.26 16 4 H -0.31 -14.98 7.11 99.48 0.71 -14.28 16 5 H -0.23 -9.92 4.83 99.48 0.48 -9.44 16 6 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 7 C -0.27 -14.54 9.85 84.03 0.83 -13.71 16 8 H 0.05 2.88 8.06 -2.91 -0.02 2.86 16 9 N -0.61 -27.68 2.69 -697.34 -1.87 -29.56 16 10 C 0.12 4.78 4.54 86.56 0.39 5.18 16 11 C 0.10 2.91 6.52 86.56 0.56 3.47 16 12 N -0.61 -19.14 2.95 -817.16 -2.41 -21.55 16 13 C 0.51 15.07 7.48 87.66 0.66 15.73 16 14 O -0.58 -20.63 13.91 -3.04 -0.04 -20.67 16 15 C -0.13 -2.64 3.58 29.85 0.11 -2.53 16 16 C -0.04 -0.88 2.42 -9.72 -0.02 -0.91 16 17 H 0.07 1.67 8.02 -2.39 -0.02 1.65 16 18 C -0.12 -2.60 5.16 31.89 0.16 -2.44 16 19 C -0.10 -1.66 6.76 31.67 0.21 -1.45 16 20 C -0.17 -2.50 6.97 -10.07 -0.07 -2.57 16 21 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 22 C -0.15 -2.00 9.94 31.44 0.31 -1.69 16 23 C -0.17 -2.73 6.52 -9.22 -0.06 -2.79 16 24 H 0.12 1.72 8.14 -2.38 -0.02 1.70 16 25 C 0.10 3.57 6.59 86.41 0.57 4.14 16 26 C 0.13 5.13 6.67 86.41 0.58 5.71 16 27 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 28 H 0.04 1.45 6.68 -2.39 -0.02 1.44 16 29 H 0.06 2.62 5.62 -2.38 -0.01 2.61 16 30 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 31 H 0.12 2.54 5.91 -2.38 -0.01 2.53 16 32 H 0.11 1.99 7.72 -2.39 -0.02 1.97 16 33 H 0.11 1.94 7.87 -2.39 -0.02 1.92 16 34 H 0.06 1.33 7.29 -2.39 -0.02 1.32 16 35 H 0.06 1.52 7.06 -2.39 -0.02 1.51 16 36 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.09 1.31 7.27 -2.38 -0.02 1.29 16 39 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.09 2.95 6.99 -2.39 -0.02 2.94 16 42 H 0.07 2.73 7.93 -2.39 -0.02 2.71 16 43 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -65.90 326.74 3.19 -62.70 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: 0.76 Total: 14.34 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: 4.64 Total: 5.96 kcal Atomic # 7 Polarization: -102.61 SS G_CDS: -3.98 Total: -106.59 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.04 Total: -20.67 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 1.81 Total: 44.26 kcal Total: -65.90 3.19 -62.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449950359.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.687 kcal (2) G-P(sol) polarization free energy of solvation -65.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds