Wall clock time and date at job start Tue Mar 31 2020 00:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99827 * 2 1 4 4 H 1.48506 * 109.47079 * 270.00360 * 3 2 1 5 5 H 1.48498 * 109.46966 * 30.00046 * 3 2 1 6 6 H 1.48501 * 109.46934 * 150.00273 * 3 2 1 7 7 C 1.38812 * 120.00250 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00194 * 192.25031 * 7 2 1 9 9 N 1.36940 * 119.99836 * 12.24339 * 7 2 1 10 10 C 1.47040 * 120.45188 * 210.06169 * 9 7 2 11 11 C 1.53372 * 108.59418 * 235.06160 * 10 9 7 12 12 N 1.46969 * 108.77439 * 310.83339 * 11 10 9 13 13 C 1.34774 * 120.58874 * 235.12186 * 12 11 10 14 14 O 1.21276 * 120.00412 * 355.41686 * 13 12 11 15 15 C 1.50709 * 119.99527 * 175.42338 * 13 12 11 16 16 H 1.08992 * 110.05115 * 28.52551 * 15 13 12 17 17 C 1.54381 * 110.06660 * 150.01163 * 15 13 12 18 18 C 1.54919 * 104.22493 * 142.78113 * 17 15 13 19 19 C 1.54996 * 102.81722 * 322.27610 * 18 17 15 20 20 C 1.53473 * 110.06788 * 266.97674 * 15 13 12 21 21 C 1.52572 * 121.05080 * 96.56990 * 20 15 13 22 22 C 1.52558 * 121.08871 * 24.85703 * 20 15 13 23 23 C 1.46964 * 118.81203 * 55.13863 * 12 11 10 24 24 C 1.46961 * 120.59093 * 30.16875 * 9 7 2 25 25 H 0.97000 * 120.00316 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.49044 * 115.41164 * 10 9 7 27 27 H 1.09006 * 109.76941 * 354.87388 * 10 9 7 28 28 H 1.08997 * 109.61031 * 191.00268 * 11 10 9 29 29 H 1.09004 * 109.61153 * 70.66140 * 11 10 9 30 30 H 1.09006 * 110.48220 * 261.46363 * 17 15 13 31 31 H 1.09000 * 110.48880 * 24.09275 * 17 15 13 32 32 H 1.08999 * 110.74623 * 80.61083 * 18 17 15 33 33 H 1.09004 * 110.74716 * 203.76669 * 18 17 15 34 34 H 1.09001 * 110.51124 * 156.21635 * 19 18 17 35 35 H 1.08999 * 110.51148 * 278.79248 * 19 18 17 36 36 H 1.09001 * 117.50850 * 356.96815 * 21 20 15 37 37 H 1.08995 * 117.51254 * 142.06108 * 21 20 15 38 38 H 1.08997 * 117.51195 * 217.88106 * 22 20 15 39 39 H 1.08998 * 117.50958 * 2.93097 * 22 20 15 40 40 H 1.08998 * 109.60753 * 64.52119 * 23 12 11 41 41 H 1.08996 * 109.60673 * 184.85796 * 23 12 11 42 42 H 1.08997 * 109.61257 * 5.02239 * 24 9 7 43 43 H 1.09003 * 109.75058 * 244.59089 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6526 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0718 -1.2128 0.1979 9 7 1.3490 -2.3745 -0.2526 10 6 1.8118 -3.6349 0.3468 11 6 2.0458 -4.6533 -0.7757 12 7 0.8649 -4.6728 -1.6504 13 6 0.2144 -5.8268 -1.8989 14 8 0.6496 -6.8733 -1.4674 15 6 -1.0538 -5.8166 -2.7130 16 1 -1.0421 -4.9809 -3.4126 17 6 -1.2013 -7.1480 -3.4805 18 6 -2.7210 -7.4456 -3.4380 19 6 -3.1241 -6.9740 -2.0176 20 6 -2.2733 -5.7129 -1.7870 21 6 -2.9331 -4.3670 -1.5023 22 6 -2.1576 -5.0911 -0.3987 23 6 0.4063 -3.4117 -2.2496 24 6 0.1681 -2.3939 -1.1272 25 1 -0.4850 0.8400 0.0004 26 1 1.0521 -4.0127 1.0310 27 1 2.7431 -3.4659 0.8875 28 1 2.1988 -5.6431 -0.3457 29 1 2.9242 -4.3657 -1.3535 30 1 -0.8637 -7.0338 -4.5107 31 1 -0.6434 -7.9401 -2.9811 32 1 -3.2484 -6.8712 -4.1996 33 1 -2.9093 -8.5121 -3.5616 34 1 -4.1859 -6.7300 -1.9832 35 1 -2.8849 -7.7391 -1.2790 36 1 -2.4757 -3.4795 -1.9398 37 1 -4.0199 -4.3458 -1.4231 38 1 -2.7345 -5.5461 0.4064 39 1 -1.1901 -4.6804 -0.1100 40 1 1.1675 -3.0327 -2.9316 41 1 -0.5216 -3.5821 -2.7954 42 1 0.0151 -1.4042 -1.5573 43 1 -0.7115 -2.6829 -0.5520 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528616526.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:02 Heat of formation + Delta-G solvation = 13.531171 kcal Electronic energy + Delta-G solvation = -23343.844265 eV Core-core repulsion = 20197.219863 eV Total energy + Delta-G solvation = -3146.624402 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.44475 -38.01161 -36.70974 -34.08455 -33.71446 -31.51581 -30.29156 -29.07350 -26.92260 -25.58920 -23.69558 -22.86795 -22.23150 -21.37491 -20.31284 -19.23473 -17.93266 -17.16583 -16.26831 -15.64949 -15.51808 -14.94465 -14.62956 -14.40988 -14.03964 -13.60115 -13.36152 -13.29223 -13.09548 -12.76642 -12.38610 -12.26049 -11.88617 -11.39660 -11.30310 -11.12912 -11.04860 -10.87816 -10.79651 -10.71218 -10.52709 -10.46996 -10.21979 -10.03650 -10.00714 -9.86215 -9.80352 -9.02522 -8.59843 -8.20841 -6.69019 -5.86489 -3.34731 3.02007 3.32451 3.39468 3.40405 3.45724 3.98070 4.42178 4.45256 4.67707 4.93993 4.96944 5.13020 5.22762 5.27142 5.31412 5.34041 5.49563 5.64193 5.78031 5.83971 5.86196 5.88073 5.90934 5.95011 5.97652 6.03259 6.11111 6.16590 6.21377 6.23226 6.28554 6.37378 6.39861 6.44941 6.46902 6.77956 6.94969 7.24160 7.49894 7.69972 7.97079 8.36192 8.63759 9.11715 9.72524 10.29971 11.20550 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027990 B = 0.005273 C = 0.004821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.123171 B = 5308.475047 C = 5806.196718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.005 3.995 3 Si 0.906 3.094 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.254 4.254 8 H 0.066 0.934 9 N -0.590 5.590 10 C 0.132 3.868 11 C 0.095 3.905 12 N -0.596 5.596 13 C 0.520 3.480 14 O -0.558 6.558 15 C -0.080 4.080 16 H 0.093 0.907 17 C -0.111 4.111 18 C -0.119 4.119 19 C -0.085 4.085 20 C -0.120 4.120 21 C -0.161 4.161 22 C -0.167 4.167 23 C 0.074 3.926 24 C 0.157 3.843 25 H 0.255 0.745 26 H 0.022 0.978 27 H 0.066 0.934 28 H 0.080 0.920 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.104 0.896 40 H 0.061 0.939 41 H 0.073 0.927 42 H 0.101 0.899 43 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.597 -10.271 -6.608 13.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.194 4.194 3 Si 0.736 3.264 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.384 4.384 8 H 0.084 0.916 9 N -0.313 5.313 10 C 0.005 3.995 11 C -0.029 4.029 12 N -0.328 5.328 13 C 0.308 3.692 14 O -0.437 6.437 15 C -0.101 4.101 16 H 0.111 0.889 17 C -0.149 4.149 18 C -0.156 4.156 19 C -0.122 4.122 20 C -0.121 4.121 21 C -0.198 4.198 22 C -0.204 4.204 23 C -0.050 4.050 24 C 0.030 3.970 25 H 0.065 0.935 26 H 0.040 0.960 27 H 0.084 0.916 28 H 0.098 0.902 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.103 0.897 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.119 0.881 37 H 0.112 0.888 38 H 0.109 0.891 39 H 0.122 0.878 40 H 0.079 0.921 41 H 0.091 0.909 42 H 0.119 0.881 43 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -5.448 -10.638 -6.352 13.535 hybrid contribution 0.439 1.149 0.039 1.230 sum -5.009 -9.489 -6.313 12.449 Atomic orbital electron populations 1.69949 1.05231 1.25628 1.54051 1.25124 0.95410 0.98426 1.00418 0.86239 0.79074 0.83421 0.77708 1.21381 1.21665 1.20403 1.19224 0.91311 0.83995 1.43868 0.91592 1.43952 1.32328 1.02844 1.52210 1.21318 0.98400 0.87155 0.92619 1.22185 0.86859 1.00778 0.93120 1.48080 1.29473 1.07649 1.47609 1.20408 0.84818 0.83259 0.80666 1.90592 1.68184 1.31091 1.53841 1.21452 0.91643 1.00272 0.96715 0.88893 1.22347 0.96809 0.96314 0.99415 1.22433 0.95687 1.00667 0.96853 1.21842 0.98144 0.95174 0.97028 1.21467 0.96930 0.95074 0.98605 1.23060 0.99170 0.94601 1.02995 1.23071 1.03093 1.03061 0.91186 1.22805 0.98863 0.84999 0.98309 1.21251 0.88883 0.97665 0.89158 0.93477 0.95966 0.91578 0.90167 0.92165 0.91601 0.89675 0.91470 0.91463 0.91624 0.91190 0.88121 0.88812 0.89068 0.87775 0.92067 0.90902 0.88079 0.95311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.96 11.02 55.49 0.61 -24.35 16 2 C 0.00 0.13 5.02 -17.43 -0.09 0.04 16 3 Si 0.91 20.97 29.57 -169.99 -5.03 15.94 16 4 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.25 -6.69 9.58 -15.06 -0.14 -6.84 16 8 H 0.07 1.72 7.86 -52.49 -0.41 1.30 16 9 N -0.59 -14.16 2.97 -171.98 -0.51 -14.67 16 10 C 0.13 2.76 6.68 -3.56 -0.02 2.74 16 11 C 0.09 1.78 6.58 -3.59 -0.02 1.75 16 12 N -0.60 -10.90 2.50 -172.48 -0.43 -11.33 16 13 C 0.52 9.27 5.54 -10.98 -0.06 9.21 16 14 O -0.56 -11.40 15.13 5.56 0.08 -11.32 16 15 C -0.08 -1.15 2.49 -90.80 -0.23 -1.38 16 16 H 0.09 1.26 5.91 -51.93 -0.31 0.95 16 17 C -0.11 -1.40 6.32 -24.99 -0.16 -1.56 16 18 C -0.12 -1.25 6.91 -24.66 -0.17 -1.42 16 19 C -0.08 -0.98 6.58 -25.22 -0.17 -1.15 16 20 C -0.12 -1.65 2.26 -154.26 -0.35 -2.00 16 21 C -0.16 -2.20 10.18 -26.90 -0.27 -2.48 16 22 C -0.17 -2.60 9.53 -26.91 -0.26 -2.85 16 23 C 0.07 1.34 6.46 -3.60 -0.02 1.32 16 24 C 0.16 3.47 5.46 -3.60 -0.02 3.45 16 25 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 26 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.07 1.32 7.93 -51.93 -0.41 0.91 16 28 H 0.08 1.49 7.02 -51.93 -0.36 1.12 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.08 1.24 6.88 -51.93 -0.36 0.88 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.67 8.11 -51.93 -0.42 0.25 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.10 1.46 7.09 -51.93 -0.37 1.09 16 37 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.10 1.94 5.84 -51.93 -0.30 1.64 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.07 1.13 4.29 -51.93 -0.22 0.91 16 42 H 0.10 2.50 5.96 -51.93 -0.31 2.19 16 43 H 0.03 0.67 6.87 -51.93 -0.36 0.31 16 LS Contribution 327.44 15.07 4.93 4.93 Total: -1.00 -29.24 327.44 -9.09 -38.34 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -6.77 Total: 3.62 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -1.98 Total: -1.17 kcal Atomic # 7 Polarization: -50.02 SS G_CDS: -0.33 Total: -50.35 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.08 Total: -11.32 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.03 Total: 15.94 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.24 -9.09 -38.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528616526.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.870 kcal (2) G-P(sol) polarization free energy of solvation -29.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds