Wall clock time and date at job start Tue Mar 31 2020 00:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99827 * 2 1 4 4 H 1.48506 * 109.47079 * 270.00360 * 3 2 1 5 5 H 1.48498 * 109.46966 * 30.00046 * 3 2 1 6 6 H 1.48501 * 109.46934 * 150.00273 * 3 2 1 7 7 C 1.38812 * 120.00250 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00194 * 192.25031 * 7 2 1 9 9 N 1.36940 * 119.99836 * 12.24339 * 7 2 1 10 10 C 1.47040 * 120.45188 * 210.06169 * 9 7 2 11 11 C 1.53372 * 108.59418 * 235.06160 * 10 9 7 12 12 N 1.46969 * 108.77439 * 310.83339 * 11 10 9 13 13 C 1.34774 * 120.58874 * 235.12186 * 12 11 10 14 14 O 1.21276 * 120.00412 * 355.41686 * 13 12 11 15 15 C 1.50709 * 119.99527 * 175.42338 * 13 12 11 16 16 H 1.08992 * 110.05115 * 28.52551 * 15 13 12 17 17 C 1.54381 * 110.06660 * 150.01163 * 15 13 12 18 18 C 1.54919 * 104.22493 * 142.78113 * 17 15 13 19 19 C 1.54996 * 102.81722 * 322.27610 * 18 17 15 20 20 C 1.53473 * 110.06788 * 266.97674 * 15 13 12 21 21 C 1.52572 * 121.05080 * 96.56990 * 20 15 13 22 22 C 1.52558 * 121.08871 * 24.85703 * 20 15 13 23 23 C 1.46964 * 118.81203 * 55.13863 * 12 11 10 24 24 C 1.46961 * 120.59093 * 30.16875 * 9 7 2 25 25 H 0.97000 * 120.00316 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.49044 * 115.41164 * 10 9 7 27 27 H 1.09006 * 109.76941 * 354.87388 * 10 9 7 28 28 H 1.08997 * 109.61031 * 191.00268 * 11 10 9 29 29 H 1.09004 * 109.61153 * 70.66140 * 11 10 9 30 30 H 1.09006 * 110.48220 * 261.46363 * 17 15 13 31 31 H 1.09000 * 110.48880 * 24.09275 * 17 15 13 32 32 H 1.08999 * 110.74623 * 80.61083 * 18 17 15 33 33 H 1.09004 * 110.74716 * 203.76669 * 18 17 15 34 34 H 1.09001 * 110.51124 * 156.21635 * 19 18 17 35 35 H 1.08999 * 110.51148 * 278.79248 * 19 18 17 36 36 H 1.09001 * 117.50850 * 356.96815 * 21 20 15 37 37 H 1.08995 * 117.51254 * 142.06108 * 21 20 15 38 38 H 1.08997 * 117.51195 * 217.88106 * 22 20 15 39 39 H 1.08998 * 117.50958 * 2.93097 * 22 20 15 40 40 H 1.08998 * 109.60753 * 64.52119 * 23 12 11 41 41 H 1.08996 * 109.60673 * 184.85796 * 23 12 11 42 42 H 1.08997 * 109.61257 * 5.02239 * 24 9 7 43 43 H 1.09003 * 109.75058 * 244.59089 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6526 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0718 -1.2128 0.1979 9 7 1.3490 -2.3745 -0.2526 10 6 1.8118 -3.6349 0.3468 11 6 2.0458 -4.6533 -0.7757 12 7 0.8649 -4.6728 -1.6504 13 6 0.2144 -5.8268 -1.8989 14 8 0.6496 -6.8733 -1.4674 15 6 -1.0538 -5.8166 -2.7130 16 1 -1.0421 -4.9809 -3.4126 17 6 -1.2013 -7.1480 -3.4805 18 6 -2.7210 -7.4456 -3.4380 19 6 -3.1241 -6.9740 -2.0176 20 6 -2.2733 -5.7129 -1.7870 21 6 -2.9331 -4.3670 -1.5023 22 6 -2.1576 -5.0911 -0.3987 23 6 0.4063 -3.4117 -2.2496 24 6 0.1681 -2.3939 -1.1272 25 1 -0.4850 0.8400 0.0004 26 1 1.0521 -4.0127 1.0310 27 1 2.7431 -3.4659 0.8875 28 1 2.1988 -5.6431 -0.3457 29 1 2.9242 -4.3657 -1.3535 30 1 -0.8637 -7.0338 -4.5107 31 1 -0.6434 -7.9401 -2.9811 32 1 -3.2484 -6.8712 -4.1996 33 1 -2.9093 -8.5121 -3.5616 34 1 -4.1859 -6.7300 -1.9832 35 1 -2.8849 -7.7391 -1.2790 36 1 -2.4757 -3.4795 -1.9398 37 1 -4.0199 -4.3458 -1.4231 38 1 -2.7345 -5.5461 0.4064 39 1 -1.1901 -4.6804 -0.1100 40 1 1.1675 -3.0327 -2.9316 41 1 -0.5216 -3.5821 -2.7954 42 1 0.0151 -1.4042 -1.5573 43 1 -0.7115 -2.6829 -0.5520 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528616526.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:01 Heat of formation + Delta-G solvation = -1.727140 kcal Electronic energy + Delta-G solvation = -23344.505915 eV Core-core repulsion = 20197.219863 eV Total energy + Delta-G solvation = -3147.286052 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.76767 -39.33003 -38.32034 -35.65198 -34.95427 -33.30874 -31.99127 -30.29551 -28.59111 -26.71279 -25.45120 -24.47886 -23.43599 -22.78132 -21.45589 -20.70217 -19.40363 -18.64346 -17.90469 -17.07583 -16.77578 -16.65017 -15.94036 -15.79320 -15.51919 -15.20900 -15.09540 -14.93593 -14.37220 -14.04304 -13.68575 -13.43315 -13.37435 -13.18459 -12.73158 -12.54740 -12.43637 -12.40019 -12.22295 -12.01608 -11.93529 -11.90741 -11.76530 -11.65737 -11.40220 -11.13479 -11.07823 -10.60499 -10.33087 -9.81562 -8.61893 -7.87384 -5.39400 1.48326 1.49833 1.58141 1.60855 2.02969 2.50460 2.80861 3.27736 3.37880 3.57209 3.65361 3.71045 3.88834 4.03687 4.16632 4.20509 4.25485 4.34794 4.35396 4.46176 4.58955 4.64455 4.70527 4.73255 4.78777 4.79683 4.82964 4.94023 5.02671 5.03706 5.08279 5.16999 5.19520 5.24078 5.25570 5.31011 5.49435 5.58362 5.62151 5.68650 6.37485 6.50209 7.12539 7.18878 7.78358 8.32365 9.16838 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027990 B = 0.005273 C = 0.004821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.123171 B = 5308.475047 C = 5806.196718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.041 4.041 3 Si 0.968 3.032 4 H -0.282 1.282 5 H -0.295 1.295 6 H -0.272 1.272 7 C -0.267 4.267 8 H 0.066 0.934 9 N -0.607 5.607 10 C 0.135 3.865 11 C 0.104 3.896 12 N -0.600 5.600 13 C 0.519 3.481 14 O -0.586 6.586 15 C -0.081 4.081 16 H 0.106 0.894 17 C -0.110 4.110 18 C -0.109 4.109 19 C -0.084 4.084 20 C -0.113 4.113 21 C -0.148 4.148 22 C -0.192 4.192 23 C 0.090 3.910 24 C 0.167 3.833 25 H 0.252 0.748 26 H 0.007 0.993 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.062 0.938 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.061 0.939 36 H 0.090 0.910 37 H 0.117 0.883 38 H 0.097 0.903 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.101 0.899 42 H 0.075 0.925 43 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.405 -10.848 -8.322 15.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.237 4.237 3 Si 0.797 3.203 4 H -0.209 1.209 5 H -0.222 1.222 6 H -0.197 1.197 7 C -0.397 4.397 8 H 0.084 0.916 9 N -0.330 5.330 10 C 0.008 3.992 11 C -0.020 4.020 12 N -0.332 5.332 13 C 0.309 3.691 14 O -0.467 6.467 15 C -0.102 4.102 16 H 0.124 0.876 17 C -0.148 4.148 18 C -0.147 4.147 19 C -0.122 4.122 20 C -0.113 4.113 21 C -0.185 4.185 22 C -0.229 4.229 23 C -0.034 4.034 24 C 0.041 3.959 25 H 0.061 0.939 26 H 0.025 0.975 27 H 0.089 0.911 28 H 0.100 0.900 29 H 0.086 0.914 30 H 0.102 0.898 31 H 0.081 0.919 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.079 0.921 36 H 0.109 0.891 37 H 0.135 0.865 38 H 0.116 0.884 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.119 0.881 42 H 0.093 0.907 43 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges -6.248 -11.235 -8.076 15.182 hybrid contribution 0.711 1.294 0.653 1.614 sum -5.537 -9.942 -7.423 13.587 Atomic orbital electron populations 1.70100 1.06442 1.25983 1.55100 1.25808 0.96140 1.01230 1.00553 0.85261 0.77931 0.79513 0.77643 1.20887 1.22197 1.19743 1.19505 0.91585 0.85072 1.43528 0.91636 1.44195 1.32618 1.03181 1.53046 1.21338 0.97985 0.86627 0.93231 1.21993 0.87516 0.99929 0.92607 1.48137 1.29419 1.08010 1.47588 1.21040 0.85371 0.82404 0.80299 1.90576 1.69054 1.31992 1.55076 1.21596 0.89846 1.02099 0.96674 0.87618 1.22366 0.98475 0.94253 0.99727 1.22439 0.93781 1.02084 0.96364 1.21898 0.98912 0.93638 0.97715 1.21596 0.96902 0.96163 0.96646 1.23093 1.00235 0.94082 1.01089 1.22969 1.02082 1.05157 0.92676 1.22579 1.00310 0.83777 0.96684 1.21031 0.87773 0.97401 0.89702 0.93863 0.97466 0.91058 0.89983 0.91447 0.89779 0.91879 0.89551 0.89808 0.89537 0.92062 0.89130 0.86456 0.88446 0.91360 0.91743 0.88112 0.90684 0.97117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.33 11.02 21.65 0.24 -52.09 16 2 C -0.04 -2.21 5.02 84.86 0.43 -1.79 16 3 Si 0.97 43.30 29.57 68.60 2.03 45.33 16 4 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 5 H -0.30 -13.36 7.11 99.48 0.71 -12.66 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 7 C -0.27 -14.19 9.58 84.03 0.81 -13.39 16 8 H 0.07 3.42 7.86 -2.91 -0.02 3.40 16 9 N -0.61 -29.66 2.97 -698.02 -2.07 -31.73 16 10 C 0.13 5.75 6.68 86.40 0.58 6.33 16 11 C 0.10 3.91 6.58 86.41 0.57 4.47 16 12 N -0.60 -21.76 2.50 -818.01 -2.04 -23.80 16 13 C 0.52 18.17 5.54 87.66 0.49 18.66 16 14 O -0.59 -23.89 15.13 -3.02 -0.05 -23.93 16 15 C -0.08 -2.19 2.49 -10.91 -0.03 -2.22 16 16 H 0.11 2.57 5.91 -2.39 -0.01 2.56 16 17 C -0.11 -2.50 6.32 31.72 0.20 -2.30 16 18 C -0.11 -1.88 6.91 31.93 0.22 -1.66 16 19 C -0.08 -1.72 6.58 31.57 0.21 -1.51 16 20 C -0.11 -2.89 2.26 -52.02 -0.12 -3.01 16 21 C -0.15 -3.81 10.18 30.48 0.31 -3.50 16 22 C -0.19 -5.95 9.53 30.48 0.29 -5.66 16 23 C 0.09 3.20 6.46 86.42 0.56 3.76 16 24 C 0.17 7.53 5.46 86.42 0.47 8.00 16 25 H 0.25 13.75 8.31 -92.71 -0.77 12.98 16 26 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 27 H 0.07 2.91 7.93 -2.38 -0.02 2.89 16 28 H 0.08 3.06 7.02 -2.39 -0.02 3.04 16 29 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 31 H 0.06 1.74 6.88 -2.39 -0.02 1.72 16 32 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.09 1.43 8.11 -2.39 -0.02 1.41 16 35 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.09 2.52 7.09 -2.39 -0.02 2.50 16 37 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 38 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 39 H 0.07 2.63 5.84 -2.39 -0.01 2.62 16 40 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 41 H 0.10 2.99 4.29 -2.39 -0.01 2.98 16 42 H 0.08 3.79 5.96 -2.39 -0.01 3.78 16 43 H 0.01 0.52 6.87 -2.39 -0.02 0.50 16 Total: -1.00 -63.59 327.44 4.08 -59.51 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: 0.99 Total: 20.54 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: 4.98 Total: 6.18 kcal Atomic # 7 Polarization: -103.74 SS G_CDS: -3.88 Total: -107.62 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -0.05 Total: -23.93 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -63.59 4.08 -59.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528616526.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.779 kcal (2) G-P(sol) polarization free energy of solvation -63.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds