Wall clock time and date at job start Tue Mar 31 2020 00:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 119.99907 * 2 1 4 4 H 1.48498 * 109.47337 * 272.17248 * 3 2 1 5 5 H 1.48504 * 109.47132 * 32.17160 * 3 2 1 6 6 H 1.48503 * 109.47137 * 152.17140 * 3 2 1 7 7 C 1.38815 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.07989 * 119.99864 * 341.76534 * 7 2 1 9 9 N 1.36938 * 119.99521 * 161.76530 * 7 2 1 10 10 C 1.46962 * 120.59810 * 331.60665 * 9 7 2 11 11 C 1.53375 * 108.63284 * 235.21012 * 10 9 7 12 12 N 1.46966 * 108.63538 * 310.57170 * 11 10 9 13 13 C 1.34769 * 120.59447 * 235.20892 * 12 11 10 14 14 O 1.21286 * 120.00471 * 5.31535 * 13 12 11 15 15 C 1.50705 * 119.99931 * 185.31635 * 13 12 11 16 16 H 1.08998 * 110.09615 * 326.65040 * 15 13 12 17 17 C 1.54383 * 110.07002 * 205.13286 * 15 13 12 18 18 C 1.54924 * 104.33804 * 217.13970 * 17 15 13 19 19 C 1.55330 * 102.66372 * 37.71159 * 18 17 15 20 20 C 1.53484 * 110.06858 * 88.16154 * 15 13 12 21 21 C 1.52551 * 121.08040 * 335.19632 * 20 15 13 22 22 C 1.52558 * 121.05905 * 263.47588 * 20 15 13 23 23 C 1.46968 * 118.80907 * 55.48141 * 12 11 10 24 24 C 1.46965 * 120.58842 * 151.58767 * 9 7 2 25 25 H 0.97002 * 120.00240 * 359.97438 * 1 2 3 26 26 H 1.08991 * 109.61306 * 115.46457 * 10 9 7 27 27 H 1.09001 * 109.60870 * 354.94648 * 10 9 7 28 28 H 1.09006 * 109.60688 * 190.83089 * 11 10 9 29 29 H 1.08997 * 109.61403 * 70.32264 * 11 10 9 30 30 H 1.08995 * 110.48255 * 335.88987 * 17 15 13 31 31 H 1.09001 * 110.48286 * 98.39290 * 17 15 13 32 32 H 1.08997 * 110.74545 * 156.12152 * 18 17 15 33 33 H 1.09004 * 110.74458 * 279.45424 * 18 17 15 34 34 H 1.09000 * 110.49810 * 203.81233 * 19 18 17 35 35 H 1.08998 * 110.61211 * 81.17887 * 19 18 17 36 36 H 1.09001 * 117.51210 * 357.01690 * 21 20 15 37 37 H 1.08998 * 117.51289 * 142.10389 * 21 20 15 38 38 H 1.09002 * 117.51322 * 217.92544 * 22 20 15 39 39 H 1.09003 * 117.50932 * 3.01926 * 22 20 15 40 40 H 1.08995 * 109.60687 * 64.26699 * 23 12 11 41 41 H 1.09002 * 109.61043 * 184.78129 * 23 12 11 42 42 H 1.09003 * 109.61039 * 244.53415 * 24 9 7 43 43 H 1.08997 * 109.61425 * 5.04794 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4517 2.0730 -1.3990 5 1 1.4713 2.6390 0.7455 6 1 3.5700 1.4274 0.6536 7 6 2.0103 -1.2022 -0.0005 8 1 1.5110 -2.1140 0.2917 9 7 3.3281 -1.2317 -0.3717 10 6 3.8607 -0.2427 -1.3193 11 6 4.5155 -0.9880 -2.4890 12 7 5.4227 -2.0090 -1.9464 13 6 6.7196 -2.0381 -2.3116 14 8 7.1706 -1.1615 -3.0181 15 6 7.6096 -3.1601 -1.8422 16 1 7.3077 -3.4863 -0.8470 17 6 9.0819 -2.6960 -1.8237 18 6 9.8822 -3.9402 -2.2838 19 6 8.9600 -4.5548 -3.3722 20 6 7.5382 -4.3359 -2.8261 21 6 6.3179 -4.5436 -3.7178 22 6 6.6079 -5.5183 -2.5733 23 6 4.8888 -3.0014 -1.0029 24 6 4.2352 -2.2527 0.1710 25 1 -0.4850 0.8400 0.0004 26 1 4.6035 0.3793 -0.8201 27 1 3.0483 0.3812 -1.6921 28 1 5.0805 -0.2845 -3.1006 29 1 3.7460 -1.4669 -3.0945 30 1 9.2299 -1.8691 -2.5182 31 1 9.3772 -2.4040 -0.8159 32 1 10.8421 -3.6465 -2.7085 33 1 10.0216 -4.6370 -1.4572 34 1 9.1645 -5.6191 -3.4891 35 1 9.0886 -4.0356 -4.3219 36 1 5.4810 -3.8563 -3.5939 37 1 6.4914 -4.8953 -4.7347 38 1 6.9721 -6.5110 -2.8376 39 1 5.9617 -5.4720 -1.6967 40 1 4.1452 -3.6204 -1.5050 41 1 5.7003 -3.6279 -0.6328 42 1 5.0048 -1.7738 0.7764 43 1 3.6702 -2.9562 0.7826 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528616534.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:05 Heat of formation + Delta-G solvation = 20.924038 kcal Electronic energy + Delta-G solvation = -23119.559552 eV Core-core repulsion = 19973.255728 eV Total energy + Delta-G solvation = -3146.303824 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.64164 -38.30015 -36.95111 -34.37672 -33.82899 -31.51155 -31.05822 -29.26591 -27.16454 -25.79880 -23.72303 -23.27880 -22.55703 -21.42159 -20.65156 -19.63287 -17.98017 -17.27614 -16.40777 -16.04563 -15.77048 -15.18662 -14.89721 -14.64032 -14.26810 -14.00223 -13.79555 -13.37123 -13.01032 -12.72980 -12.60853 -12.47424 -12.25452 -12.09463 -11.56035 -11.52800 -11.19097 -11.15984 -10.97331 -10.94979 -10.60654 -10.43221 -10.34658 -10.26334 -10.10248 -9.95566 -9.58448 -9.23519 -8.87539 -8.30961 -7.00985 -6.01509 -3.41092 2.85540 3.21497 3.28011 3.45246 3.47525 3.69977 4.24933 4.46159 4.46644 4.69272 4.72127 4.79510 4.90351 5.08984 5.11209 5.20417 5.29909 5.46366 5.51667 5.54406 5.58343 5.63407 5.70192 5.72536 5.78052 5.81228 5.88552 5.90891 5.97912 6.02431 6.05752 6.08492 6.13406 6.19825 6.30042 6.38074 6.47026 6.65970 6.89582 7.75573 7.86349 8.25107 8.46035 8.83481 9.63028 9.99459 11.14121 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.031604 B = 0.005028 C = 0.004731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.760006 B = 5567.633019 C = 5916.999857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.026 3.974 3 Si 0.885 3.115 4 H -0.287 1.287 5 H -0.302 1.302 6 H -0.271 1.271 7 C -0.265 4.265 8 H 0.087 0.913 9 N -0.605 5.605 10 C 0.112 3.888 11 C 0.095 3.905 12 N -0.599 5.599 13 C 0.521 3.479 14 O -0.551 6.551 15 C -0.080 4.080 16 H 0.095 0.905 17 C -0.112 4.112 18 C -0.119 4.119 19 C -0.085 4.085 20 C -0.117 4.117 21 C -0.171 4.171 22 C -0.165 4.165 23 C 0.085 3.915 24 C 0.134 3.866 25 H 0.264 0.736 26 H 0.031 0.969 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.028 0.972 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.752 -10.695 -4.398 20.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.173 4.173 3 Si 0.715 3.285 4 H -0.215 1.215 5 H -0.230 1.230 6 H -0.196 1.196 7 C -0.393 4.393 8 H 0.105 0.895 9 N -0.329 5.329 10 C -0.014 4.014 11 C -0.029 4.029 12 N -0.331 5.331 13 C 0.309 3.691 14 O -0.429 6.429 15 C -0.101 4.101 16 H 0.113 0.887 17 C -0.150 4.150 18 C -0.157 4.157 19 C -0.123 4.123 20 C -0.118 4.118 21 C -0.208 4.208 22 C -0.202 4.202 23 C -0.039 4.039 24 C 0.007 3.993 25 H 0.074 0.926 26 H 0.049 0.951 27 H 0.100 0.900 28 H 0.102 0.898 29 H 0.087 0.913 30 H 0.105 0.895 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.118 0.882 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.089 0.911 41 H 0.096 0.904 42 H 0.046 0.954 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 16.787 -10.125 -4.735 20.167 hybrid contribution 0.146 0.965 0.084 0.980 sum 16.933 -9.160 -4.651 19.805 Atomic orbital electron populations 1.69801 1.05683 1.26683 1.52836 1.25293 0.95244 0.97625 0.99166 0.86954 0.79884 0.84496 0.77139 1.21475 1.23017 1.19609 1.18916 0.83516 0.94635 1.42186 0.89494 1.44269 1.07340 1.33164 1.48096 1.21753 0.97245 0.92277 0.90095 1.22214 0.92232 0.91127 0.97279 1.48048 1.08713 1.31472 1.44891 1.20413 0.82098 0.86346 0.80278 1.90619 1.73902 1.39242 1.39166 1.21467 0.96202 0.92981 0.99446 0.88673 1.22355 0.91595 0.98788 1.02288 1.22498 0.97928 0.96960 0.98266 1.21914 0.91432 1.00445 0.98480 1.21496 0.92722 0.96590 1.00972 1.23053 0.99029 1.02967 0.95792 1.23075 1.02233 0.94172 1.00707 1.22601 0.98305 0.91048 0.91941 1.21390 0.93070 0.92033 0.92775 0.92628 0.95081 0.89961 0.89784 0.91306 0.89481 0.91390 0.91284 0.91381 0.91553 0.91080 0.88191 0.88762 0.88601 0.88395 0.91139 0.90373 0.95428 0.90567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.36 13.97 55.49 0.78 -26.59 16 2 C 0.03 0.74 5.28 -17.43 -0.09 0.65 16 3 Si 0.88 22.34 24.32 -169.99 -4.13 18.21 16 4 H -0.29 -7.01 6.60 56.52 0.37 -6.64 16 5 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 6 H -0.27 -6.81 6.55 56.52 0.37 -6.44 16 7 C -0.26 -7.16 10.05 -15.06 -0.15 -7.31 16 8 H 0.09 2.49 8.06 -52.49 -0.42 2.07 16 9 N -0.60 -13.94 2.74 -171.77 -0.47 -14.41 16 10 C 0.11 2.48 4.34 -3.60 -0.02 2.46 16 11 C 0.10 1.81 6.60 -3.59 -0.02 1.79 16 12 N -0.60 -10.14 2.23 -172.20 -0.38 -10.52 16 13 C 0.52 8.59 5.71 -10.99 -0.06 8.53 16 14 O -0.55 -10.83 15.01 5.55 0.08 -10.75 16 15 C -0.08 -1.01 2.46 -90.79 -0.22 -1.23 16 16 H 0.10 1.10 6.00 -51.93 -0.31 0.78 16 17 C -0.11 -1.30 6.30 -24.99 -0.16 -1.46 16 18 C -0.12 -1.08 6.94 -24.48 -0.17 -1.25 16 19 C -0.09 -0.83 6.59 -25.04 -0.17 -0.99 16 20 C -0.12 -1.30 2.26 -154.26 -0.35 -1.65 16 21 C -0.17 -2.00 9.63 -26.91 -0.26 -2.26 16 22 C -0.17 -1.60 10.20 -26.91 -0.27 -1.88 16 23 C 0.09 1.29 5.90 -3.36 -0.02 1.27 16 24 C 0.13 2.47 6.69 -3.36 -0.02 2.45 16 25 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 26 H 0.03 0.71 7.10 -51.93 -0.37 0.34 16 27 H 0.08 1.96 4.30 -51.93 -0.22 1.73 16 28 H 0.08 1.59 6.99 -51.93 -0.36 1.23 16 29 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.09 1.20 6.82 -51.93 -0.35 0.84 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.54 8.11 -51.93 -0.42 0.12 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.10 1.37 6.39 -51.93 -0.33 1.04 16 37 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 38 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.10 0.93 6.98 -51.93 -0.36 0.57 16 40 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.08 0.94 4.44 -51.93 -0.23 0.71 16 42 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.08 1.34 7.93 -51.93 -0.41 0.92 16 LS Contribution 322.16 15.07 4.85 4.85 Total: -1.00 -31.46 322.16 -8.06 -39.52 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -6.80 Total: 0.58 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -1.98 Total: -0.89 kcal Atomic # 7 Polarization: -51.44 SS G_CDS: -0.08 Total: -51.52 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.08 Total: -10.75 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.13 Total: 18.21 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.46 -8.06 -39.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528616534.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.442 kcal (2) G-P(sol) polarization free energy of solvation -31.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds