Wall clock time and date at job start Tue Mar 31 2020 00:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 119.99907 * 2 1 4 4 H 1.48498 * 109.47337 * 272.17248 * 3 2 1 5 5 H 1.48504 * 109.47132 * 32.17160 * 3 2 1 6 6 H 1.48503 * 109.47137 * 152.17140 * 3 2 1 7 7 C 1.38815 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.07989 * 119.99864 * 341.76534 * 7 2 1 9 9 N 1.36938 * 119.99521 * 161.76530 * 7 2 1 10 10 C 1.46962 * 120.59810 * 331.60665 * 9 7 2 11 11 C 1.53375 * 108.63284 * 235.21012 * 10 9 7 12 12 N 1.46966 * 108.63538 * 310.57170 * 11 10 9 13 13 C 1.34769 * 120.59447 * 235.20892 * 12 11 10 14 14 O 1.21286 * 120.00471 * 5.31535 * 13 12 11 15 15 C 1.50705 * 119.99931 * 185.31635 * 13 12 11 16 16 H 1.08998 * 110.09615 * 326.65040 * 15 13 12 17 17 C 1.54383 * 110.07002 * 205.13286 * 15 13 12 18 18 C 1.54924 * 104.33804 * 217.13970 * 17 15 13 19 19 C 1.55330 * 102.66372 * 37.71159 * 18 17 15 20 20 C 1.53484 * 110.06858 * 88.16154 * 15 13 12 21 21 C 1.52551 * 121.08040 * 335.19632 * 20 15 13 22 22 C 1.52558 * 121.05905 * 263.47588 * 20 15 13 23 23 C 1.46968 * 118.80907 * 55.48141 * 12 11 10 24 24 C 1.46965 * 120.58842 * 151.58767 * 9 7 2 25 25 H 0.97002 * 120.00240 * 359.97438 * 1 2 3 26 26 H 1.08991 * 109.61306 * 115.46457 * 10 9 7 27 27 H 1.09001 * 109.60870 * 354.94648 * 10 9 7 28 28 H 1.09006 * 109.60688 * 190.83089 * 11 10 9 29 29 H 1.08997 * 109.61403 * 70.32264 * 11 10 9 30 30 H 1.08995 * 110.48255 * 335.88987 * 17 15 13 31 31 H 1.09001 * 110.48286 * 98.39290 * 17 15 13 32 32 H 1.08997 * 110.74545 * 156.12152 * 18 17 15 33 33 H 1.09004 * 110.74458 * 279.45424 * 18 17 15 34 34 H 1.09000 * 110.49810 * 203.81233 * 19 18 17 35 35 H 1.08998 * 110.61211 * 81.17887 * 19 18 17 36 36 H 1.09001 * 117.51210 * 357.01690 * 21 20 15 37 37 H 1.08998 * 117.51289 * 142.10389 * 21 20 15 38 38 H 1.09002 * 117.51322 * 217.92544 * 22 20 15 39 39 H 1.09003 * 117.50932 * 3.01926 * 22 20 15 40 40 H 1.08995 * 109.60687 * 64.26699 * 23 12 11 41 41 H 1.09002 * 109.61043 * 184.78129 * 23 12 11 42 42 H 1.09003 * 109.61039 * 244.53415 * 24 9 7 43 43 H 1.08997 * 109.61425 * 5.04794 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4517 2.0730 -1.3990 5 1 1.4713 2.6390 0.7455 6 1 3.5700 1.4274 0.6536 7 6 2.0103 -1.2022 -0.0005 8 1 1.5110 -2.1140 0.2917 9 7 3.3281 -1.2317 -0.3717 10 6 3.8607 -0.2427 -1.3193 11 6 4.5155 -0.9880 -2.4890 12 7 5.4227 -2.0090 -1.9464 13 6 6.7196 -2.0381 -2.3116 14 8 7.1706 -1.1615 -3.0181 15 6 7.6096 -3.1601 -1.8422 16 1 7.3077 -3.4863 -0.8470 17 6 9.0819 -2.6960 -1.8237 18 6 9.8822 -3.9402 -2.2838 19 6 8.9600 -4.5548 -3.3722 20 6 7.5382 -4.3359 -2.8261 21 6 6.3179 -4.5436 -3.7178 22 6 6.6079 -5.5183 -2.5733 23 6 4.8888 -3.0014 -1.0029 24 6 4.2352 -2.2527 0.1710 25 1 -0.4850 0.8400 0.0004 26 1 4.6035 0.3793 -0.8201 27 1 3.0483 0.3812 -1.6921 28 1 5.0805 -0.2845 -3.1006 29 1 3.7460 -1.4669 -3.0945 30 1 9.2299 -1.8691 -2.5182 31 1 9.3772 -2.4040 -0.8159 32 1 10.8421 -3.6465 -2.7085 33 1 10.0216 -4.6370 -1.4572 34 1 9.1645 -5.6191 -3.4891 35 1 9.0886 -4.0356 -4.3219 36 1 5.4810 -3.8563 -3.5939 37 1 6.4914 -4.8953 -4.7347 38 1 6.9721 -6.5110 -2.8376 39 1 5.9617 -5.4720 -1.6967 40 1 4.1452 -3.6204 -1.5050 41 1 5.7003 -3.6279 -0.6328 42 1 5.0048 -1.7738 0.7764 43 1 3.6702 -2.9562 0.7826 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528616534.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:04 Heat of formation + Delta-G solvation = 2.164564 kcal Electronic energy + Delta-G solvation = -23120.373024 eV Core-core repulsion = 19973.255728 eV Total energy + Delta-G solvation = -3147.117296 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.80565 -39.49522 -38.41993 -35.80908 -34.92745 -33.51328 -32.54341 -30.35748 -28.75116 -26.73770 -25.40256 -24.85917 -23.38132 -22.80009 -21.73288 -20.81888 -19.33896 -18.69118 -18.06283 -17.24775 -17.02413 -16.78463 -16.06698 -16.01457 -15.74116 -15.38591 -15.13873 -14.69461 -14.44264 -14.22234 -14.04362 -13.77962 -13.58030 -13.43313 -12.93032 -12.68618 -12.44822 -12.39471 -12.18371 -12.00085 -11.94495 -11.87769 -11.76436 -11.62265 -11.44833 -11.14860 -11.10548 -10.88137 -10.34845 -9.90740 -8.89464 -8.20573 -5.55313 1.24979 1.36823 1.44047 1.58243 1.92889 2.35747 2.80560 3.02408 3.24575 3.37544 3.62264 3.65322 3.87004 3.99114 4.02450 4.10693 4.16748 4.27314 4.31945 4.34452 4.44647 4.50035 4.60836 4.64242 4.68261 4.79059 4.79921 4.83265 4.88070 4.94925 5.04199 5.07291 5.12955 5.17020 5.20577 5.25655 5.30080 5.44424 5.51336 5.81100 6.08825 6.45141 6.82868 7.14443 7.54096 7.95610 8.98833 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.031604 B = 0.005028 C = 0.004731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.760006 B = 5567.633019 C = 5916.999857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.027 4.027 3 Si 0.940 3.060 4 H -0.278 1.278 5 H -0.309 1.309 6 H -0.268 1.268 7 C -0.246 4.246 8 H 0.065 0.935 9 N -0.618 5.618 10 C 0.113 3.887 11 C 0.105 3.895 12 N -0.602 5.602 13 C 0.518 3.482 14 O -0.587 6.587 15 C -0.077 4.077 16 H 0.113 0.887 17 C -0.116 4.116 18 C -0.110 4.110 19 C -0.085 4.085 20 C -0.123 4.123 21 C -0.191 4.191 22 C -0.142 4.142 23 C 0.097 3.903 24 C 0.127 3.873 25 H 0.262 0.738 26 H 0.027 0.973 27 H 0.062 0.938 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.057 0.943 36 H 0.075 0.925 37 H 0.099 0.901 38 H 0.118 0.882 39 H 0.104 0.896 40 H 0.073 0.927 41 H 0.118 0.882 42 H 0.035 0.965 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.360 -12.772 -4.061 23.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.223 4.223 3 Si 0.770 3.230 4 H -0.205 1.205 5 H -0.238 1.238 6 H -0.193 1.193 7 C -0.376 4.376 8 H 0.082 0.918 9 N -0.342 5.342 10 C -0.013 4.013 11 C -0.019 4.019 12 N -0.334 5.334 13 C 0.309 3.691 14 O -0.468 6.468 15 C -0.098 4.098 16 H 0.131 0.869 17 C -0.153 4.153 18 C -0.147 4.147 19 C -0.122 4.122 20 C -0.124 4.124 21 C -0.229 4.229 22 C -0.178 4.178 23 C -0.026 4.026 24 C 0.002 3.998 25 H 0.071 0.929 26 H 0.045 0.955 27 H 0.080 0.920 28 H 0.100 0.900 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.076 0.924 36 H 0.094 0.906 37 H 0.117 0.883 38 H 0.136 0.864 39 H 0.122 0.878 40 H 0.091 0.909 41 H 0.135 0.865 42 H 0.053 0.947 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 19.446 -12.235 -4.397 23.391 hybrid contribution -0.637 1.546 -0.042 1.673 sum 18.808 -10.689 -4.438 22.084 Atomic orbital electron populations 1.69912 1.07123 1.27174 1.55688 1.25825 0.95730 1.00465 1.00247 0.86047 0.78500 0.81097 0.77372 1.20542 1.23767 1.19316 1.18905 0.85189 0.93572 1.39897 0.91758 1.44394 1.06752 1.34304 1.48781 1.21668 0.96484 0.92279 0.90853 1.21902 0.92513 0.91596 0.95927 1.48124 1.08816 1.31225 1.45203 1.21175 0.81880 0.86720 0.79344 1.90605 1.74493 1.40921 1.40776 1.21571 0.95761 0.91927 1.00512 0.86878 1.22375 0.91454 0.99190 1.02326 1.22496 0.97737 0.95863 0.98648 1.21940 0.90575 1.01719 0.97974 1.21586 0.93442 0.96723 1.00647 1.23023 0.98747 1.04082 0.97000 1.23181 1.00695 0.94419 0.99537 1.22576 0.99455 0.90365 0.90213 1.21644 0.92633 0.91270 0.94273 0.92863 0.95535 0.91980 0.90011 0.91369 0.92278 0.90294 0.90345 0.89383 0.89354 0.92422 0.90627 0.88291 0.86409 0.87776 0.90905 0.86453 0.94653 0.89735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.88 13.97 21.65 0.30 -58.58 16 2 C -0.03 -1.57 5.28 84.86 0.45 -1.13 16 3 Si 0.94 46.92 24.32 68.60 1.67 48.58 16 4 H -0.28 -13.33 6.60 99.48 0.66 -12.68 16 5 H -0.31 -15.63 7.11 99.48 0.71 -14.93 16 6 H -0.27 -13.09 6.55 99.48 0.65 -12.44 16 7 C -0.25 -13.44 10.05 84.03 0.84 -12.59 16 8 H 0.06 3.75 8.06 -2.92 -0.02 3.73 16 9 N -0.62 -28.06 2.74 -697.35 -1.91 -29.97 16 10 C 0.11 4.94 4.34 86.42 0.38 5.32 16 11 C 0.11 3.96 6.60 86.42 0.57 4.53 16 12 N -0.60 -19.46 2.23 -817.12 -1.82 -21.28 16 13 C 0.52 16.36 5.71 87.66 0.50 16.86 16 14 O -0.59 -22.95 15.01 -3.05 -0.05 -23.00 16 15 C -0.08 -1.72 2.46 -10.91 -0.03 -1.75 16 16 H 0.11 2.10 6.00 -2.39 -0.01 2.08 16 17 C -0.12 -2.40 6.30 31.72 0.20 -2.20 16 18 C -0.11 -1.61 6.94 32.05 0.22 -1.38 16 19 C -0.08 -1.36 6.59 31.69 0.21 -1.15 16 20 C -0.12 -2.35 2.26 -52.02 -0.12 -2.46 16 21 C -0.19 -4.05 9.63 30.48 0.29 -3.75 16 22 C -0.14 -2.17 10.20 30.48 0.31 -1.86 16 23 C 0.10 2.67 5.90 86.57 0.51 3.18 16 24 C 0.13 4.41 6.69 86.57 0.58 4.99 16 25 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 26 H 0.03 1.19 7.10 -2.39 -0.02 1.17 16 27 H 0.06 2.96 4.30 -2.39 -0.01 2.95 16 28 H 0.08 3.11 6.99 -2.38 -0.02 3.10 16 29 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 30 H 0.06 1.58 6.82 -2.39 -0.02 1.56 16 31 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 34 H 0.09 1.05 8.11 -2.39 -0.02 1.03 16 35 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.08 1.98 6.39 -2.39 -0.02 1.97 16 37 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.10 1.48 6.98 -2.39 -0.02 1.47 16 40 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.12 2.32 4.44 -2.39 -0.01 2.31 16 42 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.08 2.79 7.93 -2.39 -0.02 2.77 16 Total: -1.00 -69.42 322.16 4.00 -65.42 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 0.89 Total: 12.21 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: 4.92 Total: 6.62 kcal Atomic # 7 Polarization: -106.41 SS G_CDS: -3.43 Total: -109.84 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -0.05 Total: -23.00 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 1.67 Total: 48.58 kcal Total: -69.42 4.00 -65.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528616534.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.584 kcal (2) G-P(sol) polarization free energy of solvation -69.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds