Wall clock time and date at job start Tue Mar 31 2020 00:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86793 * 120.00208 * 2 1 4 4 H 1.48503 * 109.46941 * 240.00010 * 3 2 1 5 5 H 1.48501 * 109.47098 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46854 * 120.00091 * 3 2 1 7 7 C 1.37880 * 119.99757 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00244 * 186.48814 * 7 2 1 9 9 C 1.50706 * 120.00217 * 6.75652 * 7 2 1 10 10 C 1.52998 * 115.55202 * 274.54884 * 9 7 2 11 11 N 1.46508 * 109.46969 * 294.82438 * 10 9 7 12 12 C 1.34776 * 120.00244 * 177.69233 * 11 10 9 13 13 O 1.21589 * 120.00033 * 359.97438 * 12 11 10 14 14 N 1.34773 * 119.99939 * 180.02562 * 12 11 10 15 15 C 1.46495 * 120.00164 * 179.97438 * 14 12 11 16 16 H 1.09003 * 109.26478 * 35.49579 * 15 14 12 17 17 C 1.52873 * 109.26948 * 276.03089 * 15 14 12 18 18 C 1.53299 * 108.59407 * 184.84322 * 17 15 14 19 19 C 1.52874 * 108.58394 * 74.43555 * 18 17 15 20 20 C 1.52708 * 110.15749 * 305.48539 * 19 18 17 21 21 H 1.08997 * 114.91486 * 232.15841 * 20 19 18 22 22 C 1.53651 * 116.03373 * 90.19498 * 20 19 18 23 23 C 1.52068 * 120.51996 * 21.46395 * 20 19 18 24 24 H 1.09006 * 115.31355 * 211.01665 * 23 20 19 25 25 C 1.52998 * 117.49994 * 128.87019 * 9 7 2 26 26 C 1.53002 * 117.49492 * 60.21160 * 9 7 2 27 27 H 0.96991 * 119.99361 * 5.02277 * 1 2 3 28 28 H 1.08997 * 109.47414 * 54.81971 * 10 9 7 29 29 H 1.09001 * 109.47636 * 174.82968 * 10 9 7 30 30 H 0.97004 * 119.99819 * 357.69724 * 11 10 9 31 31 H 0.97004 * 120.00124 * 0.02562 * 14 12 11 32 32 H 1.08999 * 109.61661 * 304.57113 * 17 15 14 33 33 H 1.08996 * 109.62023 * 65.10547 * 17 15 14 34 34 H 1.09007 * 109.61797 * 314.71330 * 18 17 15 35 35 H 1.09002 * 109.77042 * 194.25868 * 18 17 15 36 36 H 1.09003 * 109.35981 * 185.27080 * 19 18 17 37 37 H 1.09004 * 109.35532 * 65.69460 * 19 18 17 38 38 H 1.08996 * 117.53789 * 140.94068 * 22 20 19 39 39 H 1.09005 * 117.59465 * 355.66912 * 22 20 19 40 40 H 1.08996 * 117.49770 * 0.02562 * 25 9 7 41 41 H 1.09001 * 117.49294 * 145.02221 * 25 9 7 42 42 H 1.09004 * 117.49524 * 214.98194 * 26 9 7 43 43 H 1.08999 * 117.50009 * 359.97438 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0793 -1.1972 0.1051 9 6 1.2589 -2.4946 -0.1547 10 6 0.6977 -3.0908 1.1378 11 7 1.8033 -3.4673 2.0223 12 6 1.5461 -3.9737 3.2445 13 8 0.3965 -4.1176 3.6134 14 7 2.5632 -4.3195 4.0583 15 6 2.2838 -4.8694 5.3871 16 1 1.3886 -5.4895 5.3387 17 6 2.0489 -3.7215 6.3689 18 6 1.8788 -4.3080 7.7750 19 6 3.2495 -4.7499 8.2877 20 6 3.9012 -5.7056 7.2908 21 1 4.2500 -6.6461 7.7171 22 6 4.7789 -5.0566 6.2094 23 6 3.4608 -5.7216 5.8353 24 1 3.5393 -6.6870 5.3352 25 6 1.7520 -3.4690 -1.2262 26 6 0.4475 -2.6961 -1.4361 27 1 -0.4849 0.8368 -0.0735 28 1 0.0695 -2.3522 1.6358 29 1 0.1036 -3.9739 0.9028 30 1 2.7205 -3.3521 1.7282 31 1 3.4804 -4.2037 3.7645 32 1 2.9050 -3.0470 6.3549 33 1 1.1470 -3.1780 6.0875 34 1 1.2089 -5.1670 7.7347 35 1 1.4647 -3.5520 8.4422 36 1 3.1313 -5.2538 9.2470 37 1 3.8859 -3.8745 8.4179 38 1 5.6992 -5.5705 5.9319 39 1 4.8205 -3.9678 6.1791 40 1 2.6160 -3.1696 -1.8195 41 1 1.6763 -4.5348 -1.0104 42 1 -0.4859 -3.2537 -1.3583 43 1 0.4527 -1.8878 -2.1674 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565936837.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:28:04 Heat of formation + Delta-G solvation = 1.924261 kcal Electronic energy + Delta-G solvation = -21921.625244 eV Core-core repulsion = 18774.497528 eV Total energy + Delta-G solvation = -3147.127716 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.22728 -38.75341 -36.70138 -34.00020 -33.25717 -32.91109 -31.94461 -29.27271 -26.16612 -25.20022 -24.24876 -22.67312 -21.44433 -21.11767 -19.97954 -19.32421 -18.86706 -17.48389 -16.63315 -16.10347 -15.57372 -14.93497 -14.62772 -14.31071 -14.09400 -13.95186 -13.59922 -13.45648 -13.15863 -12.86290 -12.62703 -12.08465 -11.85290 -11.58135 -11.52031 -11.16770 -11.04185 -10.98526 -10.85542 -10.53338 -10.44743 -10.31587 -10.25196 -9.89533 -9.65779 -9.44651 -8.93061 -8.73628 -8.45342 -8.23977 -7.91579 -6.06413 -4.14381 3.11828 3.28258 3.34494 3.35477 3.70533 3.87074 4.37640 4.43879 4.61100 4.69077 4.82578 4.93397 5.00018 5.15129 5.22691 5.27336 5.38151 5.46694 5.51185 5.60311 5.65541 5.82347 5.93894 5.97966 6.04498 6.06827 6.14647 6.28220 6.36559 6.37075 6.50053 6.62068 6.71144 6.89120 6.91514 7.10356 7.38324 7.45289 7.51340 7.66692 7.83142 8.36103 8.73667 8.86462 9.28492 9.52571 11.02220 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021056 B = 0.004094 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.482920 B = 6837.059847 C = 7337.303326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.074 3.926 3 Si 0.888 3.112 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.498 4.498 8 H 0.058 0.942 9 C 0.029 3.971 10 C 0.182 3.818 11 N -0.721 5.721 12 C 0.698 3.302 13 O -0.604 6.604 14 N -0.748 5.748 15 C 0.200 3.800 16 H 0.089 0.911 17 C -0.134 4.134 18 C -0.116 4.116 19 C -0.091 4.091 20 C -0.138 4.138 21 H 0.103 0.897 22 C -0.179 4.179 23 C -0.150 4.150 24 H 0.102 0.898 25 C -0.211 4.211 26 C -0.148 4.148 27 H 0.262 0.738 28 H 0.071 0.929 29 H 0.032 0.968 30 H 0.394 0.606 31 H 0.392 0.608 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.077 0.923 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.333 -9.874 12.358 17.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.130 4.130 3 Si 0.716 3.284 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.536 4.536 8 H 0.076 0.924 9 C 0.028 3.972 10 C 0.058 3.942 11 N -0.373 5.373 12 C 0.398 3.602 13 O -0.483 6.483 14 N -0.404 5.404 15 C 0.095 3.905 16 H 0.107 0.893 17 C -0.173 4.173 18 C -0.154 4.154 19 C -0.128 4.128 20 C -0.157 4.157 21 H 0.121 0.879 22 C -0.216 4.216 23 C -0.168 4.168 24 H 0.120 0.880 25 C -0.248 4.248 26 C -0.186 4.186 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.050 0.950 30 H 0.228 0.772 31 H 0.226 0.774 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.111 0.889 39 H 0.116 0.884 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.056 -9.861 12.716 17.570 hybrid contribution 1.336 1.065 -0.444 1.766 sum 8.392 -8.797 12.271 17.274 Atomic orbital electron populations 1.70006 1.05840 1.27045 1.47991 1.24959 0.94772 0.98865 0.94413 0.86731 0.79701 0.83409 0.78558 1.20293 1.21283 1.20274 1.20296 0.92629 0.88818 1.51822 0.92363 1.19045 0.98514 0.93892 0.85772 1.20851 0.86763 0.96543 0.90008 1.45138 1.11068 1.66522 1.14574 1.16055 0.84674 0.78589 0.80850 1.90862 1.19637 1.61971 1.75868 1.45182 1.08293 1.70408 1.16482 1.19893 0.96299 0.93311 0.81036 0.89350 1.22044 1.02774 0.98185 0.94288 1.21549 0.96748 1.00862 0.96275 1.21091 0.96445 0.98101 0.97204 1.22191 1.03068 1.00659 0.89755 0.87898 1.23132 0.94014 1.00535 1.03917 1.22046 0.95980 1.01038 0.97780 0.87995 1.23019 0.98586 0.95678 1.07523 1.22486 0.92330 1.01056 1.02760 0.92853 0.91051 0.94979 0.77244 0.77441 0.91828 0.90724 0.91516 0.91691 0.91649 0.91643 0.88887 0.88387 0.90411 0.91654 0.91654 0.89858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.45 12.92 55.43 0.72 -23.73 16 2 C 0.07 1.98 5.38 -17.82 -0.10 1.88 16 3 Si 0.89 20.69 29.55 -169.99 -5.02 15.67 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.50 -12.88 8.68 -34.44 -0.30 -13.18 16 8 H 0.06 1.48 7.82 -52.49 -0.41 1.06 16 9 C 0.03 0.68 1.37 -155.66 -0.21 0.46 16 10 C 0.18 4.23 5.50 -4.04 -0.02 4.21 16 11 N -0.72 -14.39 5.47 -65.22 -0.36 -14.74 16 12 C 0.70 13.67 8.51 -86.92 -0.74 12.93 16 13 O -0.60 -14.14 16.01 5.29 0.08 -14.05 16 14 N -0.75 -11.01 5.07 -59.21 -0.30 -11.31 16 15 C 0.20 2.62 2.50 -68.47 -0.17 2.45 16 16 H 0.09 1.34 7.58 -51.93 -0.39 0.94 16 17 C -0.13 -1.71 5.25 -26.64 -0.14 -1.85 16 18 C -0.12 -1.18 5.93 -26.64 -0.16 -1.34 16 19 C -0.09 -0.77 5.83 -26.95 -0.16 -0.93 16 20 C -0.14 -1.19 6.19 -90.91 -0.56 -1.75 16 21 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 22 C -0.18 -1.56 9.66 -26.75 -0.26 -1.82 16 23 C -0.15 -1.50 5.45 -91.92 -0.50 -2.00 16 24 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 25 C -0.21 -4.39 9.96 -26.69 -0.27 -4.65 16 26 C -0.15 -3.40 9.42 -26.69 -0.25 -3.65 16 27 H 0.26 7.07 8.32 -40.82 -0.34 6.73 16 28 H 0.07 1.92 8.14 -51.93 -0.42 1.50 16 29 H 0.03 0.74 8.09 -51.93 -0.42 0.32 16 30 H 0.39 7.12 8.43 -40.82 -0.34 6.78 16 31 H 0.39 4.86 8.60 -40.82 -0.35 4.51 16 32 H 0.06 0.79 7.11 -51.93 -0.37 0.42 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.07 0.68 8.04 -51.93 -0.42 0.27 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.55 8.06 -51.93 -0.42 0.13 16 38 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.10 0.91 7.26 -51.93 -0.38 0.53 16 40 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 41 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.06 1.43 8.14 -51.93 -0.42 1.00 16 43 H 0.08 2.02 8.14 -51.93 -0.42 1.60 16 LS Contribution 348.84 15.07 5.26 5.26 Total: -1.00 -29.75 348.84 -10.74 -40.49 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: -7.29 Total: 11.66 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: -3.83 Total: -9.25 kcal Atomic # 7 Polarization: -49.84 SS G_CDS: 0.06 Total: -49.78 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: 0.08 Total: -14.05 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.75 -10.74 -40.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565936837.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.418 kcal (2) G-P(sol) polarization free energy of solvation -29.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds