Wall clock time and date at job start Tue Mar 31 2020 00:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86793 * 120.00208 * 2 1 4 4 H 1.48503 * 109.46941 * 240.00010 * 3 2 1 5 5 H 1.48501 * 109.47098 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46854 * 120.00091 * 3 2 1 7 7 C 1.37880 * 119.99757 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00244 * 186.48814 * 7 2 1 9 9 C 1.50706 * 120.00217 * 6.75652 * 7 2 1 10 10 C 1.52998 * 115.55202 * 274.54884 * 9 7 2 11 11 N 1.46508 * 109.46969 * 294.82438 * 10 9 7 12 12 C 1.34776 * 120.00244 * 177.69233 * 11 10 9 13 13 O 1.21589 * 120.00033 * 359.97438 * 12 11 10 14 14 N 1.34773 * 119.99939 * 180.02562 * 12 11 10 15 15 C 1.46495 * 120.00164 * 179.97438 * 14 12 11 16 16 H 1.09003 * 109.26478 * 35.49579 * 15 14 12 17 17 C 1.52873 * 109.26948 * 276.03089 * 15 14 12 18 18 C 1.53299 * 108.59407 * 184.84322 * 17 15 14 19 19 C 1.52874 * 108.58394 * 74.43555 * 18 17 15 20 20 C 1.52708 * 110.15749 * 305.48539 * 19 18 17 21 21 H 1.08997 * 114.91486 * 232.15841 * 20 19 18 22 22 C 1.53651 * 116.03373 * 90.19498 * 20 19 18 23 23 C 1.52068 * 120.51996 * 21.46395 * 20 19 18 24 24 H 1.09006 * 115.31355 * 211.01665 * 23 20 19 25 25 C 1.52998 * 117.49994 * 128.87019 * 9 7 2 26 26 C 1.53002 * 117.49492 * 60.21160 * 9 7 2 27 27 H 0.96991 * 119.99361 * 5.02277 * 1 2 3 28 28 H 1.08997 * 109.47414 * 54.81971 * 10 9 7 29 29 H 1.09001 * 109.47636 * 174.82968 * 10 9 7 30 30 H 0.97004 * 119.99819 * 357.69724 * 11 10 9 31 31 H 0.97004 * 120.00124 * 0.02562 * 14 12 11 32 32 H 1.08999 * 109.61661 * 304.57113 * 17 15 14 33 33 H 1.08996 * 109.62023 * 65.10547 * 17 15 14 34 34 H 1.09007 * 109.61797 * 314.71330 * 18 17 15 35 35 H 1.09002 * 109.77042 * 194.25868 * 18 17 15 36 36 H 1.09003 * 109.35981 * 185.27080 * 19 18 17 37 37 H 1.09004 * 109.35532 * 65.69460 * 19 18 17 38 38 H 1.08996 * 117.53789 * 140.94068 * 22 20 19 39 39 H 1.09005 * 117.59465 * 355.66912 * 22 20 19 40 40 H 1.08996 * 117.49770 * 0.02562 * 25 9 7 41 41 H 1.09001 * 117.49294 * 145.02221 * 25 9 7 42 42 H 1.09004 * 117.49524 * 214.98194 * 26 9 7 43 43 H 1.08999 * 117.50009 * 359.97438 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0793 -1.1972 0.1051 9 6 1.2589 -2.4946 -0.1547 10 6 0.6977 -3.0908 1.1378 11 7 1.8033 -3.4673 2.0223 12 6 1.5461 -3.9737 3.2445 13 8 0.3965 -4.1176 3.6134 14 7 2.5632 -4.3195 4.0583 15 6 2.2838 -4.8694 5.3871 16 1 1.3886 -5.4895 5.3387 17 6 2.0489 -3.7215 6.3689 18 6 1.8788 -4.3080 7.7750 19 6 3.2495 -4.7499 8.2877 20 6 3.9012 -5.7056 7.2908 21 1 4.2500 -6.6461 7.7171 22 6 4.7789 -5.0566 6.2094 23 6 3.4608 -5.7216 5.8353 24 1 3.5393 -6.6870 5.3352 25 6 1.7520 -3.4690 -1.2262 26 6 0.4475 -2.6961 -1.4361 27 1 -0.4849 0.8368 -0.0735 28 1 0.0695 -2.3522 1.6358 29 1 0.1036 -3.9739 0.9028 30 1 2.7205 -3.3521 1.7282 31 1 3.4804 -4.2037 3.7645 32 1 2.9050 -3.0470 6.3549 33 1 1.1470 -3.1780 6.0875 34 1 1.2089 -5.1670 7.7347 35 1 1.4647 -3.5520 8.4422 36 1 3.1313 -5.2538 9.2470 37 1 3.8859 -3.8745 8.4179 38 1 5.6992 -5.5705 5.9319 39 1 4.8205 -3.9678 6.1791 40 1 2.6160 -3.1696 -1.8195 41 1 1.6763 -4.5348 -1.0104 42 1 -0.4859 -3.2537 -1.3583 43 1 0.4527 -1.8878 -2.1674 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565936837.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:28:03 Heat of formation + Delta-G solvation = -15.780200 kcal Electronic energy + Delta-G solvation = -21922.392967 eV Core-core repulsion = 18774.497528 eV Total energy + Delta-G solvation = -3147.895439 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.39320 -40.06330 -38.48176 -35.29259 -34.91084 -33.96464 -33.81920 -30.37760 -27.95265 -26.97583 -25.32123 -23.53715 -22.98826 -22.34188 -21.39672 -21.12256 -19.98129 -18.87742 -18.05502 -17.38292 -16.92877 -16.66185 -16.32343 -15.78875 -15.56165 -15.14752 -14.86884 -14.61446 -14.41103 -14.25040 -13.80326 -13.66395 -13.42510 -12.99391 -12.96819 -12.76603 -12.43759 -12.38167 -12.03027 -11.99674 -11.93862 -11.54457 -11.40078 -11.31144 -10.85444 -10.81003 -10.64255 -10.44184 -10.22899 -10.02005 -9.56142 -8.09567 -6.22149 1.43710 1.44368 1.51391 1.79867 2.27075 2.43718 2.86529 3.19837 3.36829 3.62388 3.65189 3.77181 3.97614 4.03553 4.16897 4.26083 4.26988 4.47481 4.57409 4.61644 4.65815 4.67515 4.69896 4.74425 4.94474 4.99764 5.02084 5.07213 5.10942 5.18295 5.28091 5.29922 5.31555 5.35825 5.46790 5.59801 5.62041 5.65924 5.74388 5.79852 6.19293 6.37662 6.85100 7.27224 7.47546 7.72141 8.98756 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021056 B = 0.004094 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.482920 B = 6837.059847 C = 7337.303326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.024 3.976 3 Si 0.948 3.052 4 H -0.268 1.268 5 H -0.292 1.292 6 H -0.273 1.273 7 C -0.502 4.502 8 H 0.063 0.937 9 C 0.005 3.995 10 C 0.199 3.801 11 N -0.716 5.716 12 C 0.695 3.305 13 O -0.646 6.646 14 N -0.728 5.728 15 C 0.199 3.801 16 H 0.063 0.937 17 C -0.131 4.131 18 C -0.113 4.113 19 C -0.089 4.089 20 C -0.129 4.129 21 H 0.123 0.877 22 C -0.169 4.169 23 C -0.160 4.160 24 H 0.109 0.891 25 C -0.174 4.174 26 C -0.159 4.159 27 H 0.258 0.742 28 H 0.024 0.976 29 H 0.031 0.969 30 H 0.406 0.594 31 H 0.407 0.593 32 H 0.068 0.932 33 H 0.035 0.965 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.110 0.890 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.070 0.930 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.184 -10.902 13.301 20.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.176 4.176 3 Si 0.774 3.226 4 H -0.193 1.193 5 H -0.218 1.218 6 H -0.198 1.198 7 C -0.540 4.540 8 H 0.081 0.919 9 C 0.004 3.996 10 C 0.074 3.926 11 N -0.369 5.369 12 C 0.395 3.605 13 O -0.529 6.529 14 N -0.384 5.384 15 C 0.094 3.906 16 H 0.081 0.919 17 C -0.170 4.170 18 C -0.151 4.151 19 C -0.126 4.126 20 C -0.148 4.148 21 H 0.141 0.859 22 C -0.206 4.206 23 C -0.179 4.179 24 H 0.127 0.873 25 C -0.211 4.211 26 C -0.198 4.198 27 H 0.067 0.933 28 H 0.043 0.957 29 H 0.049 0.951 30 H 0.241 0.759 31 H 0.243 0.757 32 H 0.087 0.913 33 H 0.054 0.946 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.103 0.897 37 H 0.089 0.911 38 H 0.129 0.871 39 H 0.111 0.889 40 H 0.106 0.894 41 H 0.107 0.893 42 H 0.088 0.912 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.983 -10.905 13.672 20.136 hybrid contribution 0.436 1.353 -0.704 1.586 sum 10.418 -9.552 12.967 19.182 Atomic orbital electron populations 1.70140 1.07270 1.27422 1.49659 1.25692 0.95409 1.02049 0.94489 0.85777 0.78408 0.79577 0.78816 1.19331 1.21797 1.19837 1.20633 0.92966 0.89757 1.50636 0.91886 1.19049 0.99765 0.94520 0.86220 1.20403 0.87125 0.95043 0.89995 1.44913 1.10809 1.66596 1.14561 1.16238 0.84922 0.78360 0.80970 1.90832 1.21807 1.63632 1.76657 1.45071 1.07930 1.68945 1.16411 1.19979 0.97120 0.93432 0.80056 0.91901 1.21981 1.01020 0.97960 0.96051 1.21534 0.98272 1.00770 0.94533 1.21109 0.94981 0.98546 0.97982 1.22331 1.02122 1.01471 0.88829 0.85883 1.23199 0.93774 1.00370 1.03290 1.21883 0.95581 1.00848 0.99593 0.87339 1.23004 0.97316 0.96251 1.04571 1.22435 0.93843 1.01411 1.02062 0.93293 0.95732 0.95110 0.75912 0.75686 0.91286 0.94627 0.91869 0.91094 0.89695 0.91128 0.87133 0.88892 0.89427 0.89303 0.91162 0.91693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.13 12.92 21.45 0.28 -51.85 16 2 C 0.02 1.30 5.38 84.65 0.46 1.75 16 3 Si 0.95 42.55 29.55 68.60 2.03 44.58 16 4 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.50 -25.84 8.68 25.60 0.22 -25.61 16 8 H 0.06 3.11 7.82 -2.91 -0.02 3.09 16 9 C 0.01 0.25 1.37 -52.93 -0.07 0.18 16 10 C 0.20 9.48 5.50 86.38 0.48 9.96 16 11 N -0.72 -28.64 5.47 -478.52 -2.62 -31.26 16 12 C 0.70 27.68 8.51 179.06 1.52 29.20 16 13 O -0.65 -31.55 16.01 -4.00 -0.06 -31.61 16 14 N -0.73 -21.16 5.07 -459.50 -2.33 -23.49 16 15 C 0.20 5.16 2.50 44.64 0.11 5.28 16 16 H 0.06 1.97 7.58 -2.39 -0.02 1.95 16 17 C -0.13 -3.38 5.25 30.65 0.16 -3.22 16 18 C -0.11 -2.18 5.93 30.65 0.18 -2.00 16 19 C -0.09 -1.26 5.83 30.46 0.18 -1.08 16 20 C -0.13 -1.80 6.19 -10.98 -0.07 -1.87 16 21 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 22 C -0.17 -2.42 9.66 30.58 0.30 -2.12 16 23 C -0.16 -2.88 5.45 -11.64 -0.06 -2.95 16 24 H 0.11 1.85 8.14 -2.38 -0.02 1.83 16 25 C -0.17 -6.91 9.96 30.62 0.30 -6.61 16 26 C -0.16 -7.29 9.42 30.62 0.29 -7.00 16 27 H 0.26 14.35 8.32 -92.72 -0.77 13.58 16 28 H 0.02 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.03 1.45 8.09 -2.39 -0.02 1.43 16 30 H 0.41 14.23 8.43 -92.70 -0.78 13.45 16 31 H 0.41 9.46 8.60 -92.70 -0.80 8.66 16 32 H 0.07 1.67 7.11 -2.39 -0.02 1.65 16 33 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.06 1.26 8.04 -2.38 -0.02 1.24 16 35 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.07 0.97 8.06 -2.39 -0.02 0.95 16 38 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.09 1.46 7.26 -2.38 -0.02 1.44 16 40 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 41 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 42 H 0.07 3.09 8.14 -2.38 -0.02 3.07 16 43 H 0.06 3.18 8.14 -2.39 -0.02 3.17 16 Total: -1.00 -65.96 348.84 0.71 -65.24 By element: Atomic # 1 Polarization: 35.06 SS G_CDS: -0.58 Total: 34.48 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: 3.99 Total: -6.09 kcal Atomic # 7 Polarization: -101.93 SS G_CDS: -4.67 Total: -106.60 kcal Atomic # 8 Polarization: -31.55 SS G_CDS: -0.06 Total: -31.61 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -65.96 0.71 -65.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565936837.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.464 kcal (2) G-P(sol) polarization free energy of solvation -65.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds