Wall clock time and date at job start Tue Mar 31 2020 00:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 119.99542 * 2 1 4 4 H 1.48504 * 109.46498 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47147 * 299.99348 * 3 2 1 6 6 H 1.48491 * 109.47134 * 59.99965 * 3 2 1 7 7 C 1.37877 * 120.00115 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99848 * 172.92750 * 7 2 1 9 9 C 1.50703 * 120.00184 * 352.91483 * 7 2 1 10 10 C 1.52998 * 115.54500 * 84.53644 * 9 7 2 11 11 N 1.46496 * 109.47499 * 39.68213 * 10 9 7 12 12 C 1.34770 * 120.00457 * 181.04685 * 11 10 9 13 13 O 1.21592 * 119.99927 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00285 * 180.02562 * 12 11 10 15 15 C 1.46504 * 120.00147 * 179.97438 * 14 12 11 16 16 H 1.09000 * 109.23273 * 324.48839 * 15 14 12 17 17 C 1.52872 * 109.26520 * 83.97271 * 15 14 12 18 18 C 1.53302 * 108.59141 * 65.37638 * 17 15 14 19 19 C 1.52877 * 108.57898 * 74.44240 * 18 17 15 20 20 C 1.52706 * 110.15509 * 305.47816 * 19 18 17 21 21 H 1.08999 * 114.91623 * 232.15776 * 20 19 18 22 22 C 1.53649 * 116.02922 * 90.20030 * 20 19 18 23 23 C 1.52070 * 109.26612 * 204.99979 * 15 14 12 24 24 H 1.08991 * 114.63959 * 46.58352 * 23 15 14 25 25 C 1.52992 * 117.52110 * 230.24265 * 9 7 2 26 26 C 1.52998 * 60.00300 * 107.47957 * 25 9 7 27 27 H 0.97001 * 120.00248 * 5.03796 * 1 2 3 28 28 H 1.09003 * 109.47158 * 279.68363 * 10 9 7 29 29 H 1.08997 * 109.46785 * 159.68249 * 10 9 7 30 30 H 0.97009 * 119.99547 * 1.05104 * 11 10 9 31 31 H 0.96995 * 119.99701 * 0.02562 * 14 12 11 32 32 H 1.09001 * 109.61562 * 185.11449 * 17 15 14 33 33 H 1.09007 * 109.61738 * 305.64662 * 17 15 14 34 34 H 1.08997 * 109.61901 * 314.71519 * 18 17 15 35 35 H 1.09002 * 109.76735 * 194.26101 * 18 17 15 36 36 H 1.09001 * 109.35453 * 185.26727 * 19 18 17 37 37 H 1.09007 * 109.24160 * 65.61929 * 19 18 17 38 38 H 1.09001 * 117.53645 * 140.93761 * 22 20 19 39 39 H 1.09003 * 117.54463 * 355.69412 * 22 20 19 40 40 H 1.08996 * 117.49870 * 214.97345 * 25 9 7 41 41 H 1.09003 * 117.50201 * 359.97438 * 25 9 7 42 42 H 1.09001 * 117.49901 * 252.50765 * 26 25 9 43 43 H 1.09002 * 117.50030 * 107.48757 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0784 -1.1975 -0.1157 9 6 1.2598 -2.4943 0.1599 10 6 0.6735 -3.0817 -1.1255 11 7 1.6224 -2.8935 -2.2256 12 6 1.3084 -3.3164 -3.4662 13 8 0.2377 -3.8545 -3.6722 14 7 2.1816 -3.1437 -4.4782 15 6 1.8405 -3.6038 -5.8266 16 1 1.2618 -4.5248 -5.7560 17 6 1.0031 -2.5342 -6.5278 18 6 1.8714 -1.2867 -6.7274 19 6 2.8615 -1.5586 -7.8601 20 6 3.6573 -2.8291 -7.5697 21 1 4.7397 -2.7174 -7.6323 22 6 3.0547 -4.1386 -8.1018 23 6 3.1198 -3.8732 -6.6035 24 1 3.8682 -4.4502 -6.0604 25 6 1.7704 -3.4758 1.2165 26 6 0.4722 -2.7022 1.4550 27 1 -0.4850 0.8368 -0.0738 28 1 -0.2624 -2.5757 -1.3624 29 1 0.4857 -4.1463 -0.9857 30 1 2.4768 -2.4646 -2.0611 31 1 3.0362 -2.7154 -4.3136 32 1 0.6698 -2.9071 -7.4963 33 1 0.1391 -2.2840 -5.9121 34 1 2.4167 -1.0695 -5.8090 35 1 1.2410 -0.4367 -6.9885 36 1 3.5468 -0.7158 -7.9509 37 1 2.3136 -1.6810 -8.7945 38 1 3.7412 -4.8788 -8.5128 39 1 2.0772 -4.0854 -8.5811 40 1 1.6888 -4.5401 0.9960 41 1 2.6456 -3.1815 1.7957 42 1 0.4931 -1.8987 2.1913 43 1 -0.4636 -3.2575 1.3914 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565936838.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:28:06 Heat of formation + Delta-G solvation = 3.640086 kcal Electronic energy + Delta-G solvation = -22193.010384 eV Core-core repulsion = 19045.957072 eV Total energy + Delta-G solvation = -3147.053312 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -40.21523 -38.65310 -36.67817 -34.04893 -33.12956 -32.61660 -32.00379 -29.34714 -26.11892 -25.26830 -24.10109 -22.70734 -21.28318 -21.14143 -20.08680 -19.37852 -18.49970 -17.49748 -16.51153 -16.07804 -15.29266 -14.99539 -14.68893 -14.30257 -14.09162 -13.87283 -13.65002 -13.35296 -12.95581 -12.70303 -12.57257 -12.29942 -11.91362 -11.58777 -11.53314 -11.09672 -11.05043 -10.93416 -10.90186 -10.53249 -10.46922 -10.21980 -10.10025 -9.76299 -9.65364 -9.38920 -8.92437 -8.68827 -8.50973 -8.25018 -7.77322 -6.09463 -4.18495 3.21960 3.23316 3.32068 3.33393 3.72047 3.94059 4.32692 4.51297 4.65665 4.78147 4.88800 5.05768 5.08577 5.20433 5.21412 5.29745 5.39848 5.46430 5.59141 5.64756 5.81060 5.85981 5.95977 5.99994 6.08187 6.16842 6.24331 6.34920 6.37713 6.39896 6.52705 6.62095 6.75061 6.94637 6.98975 7.11662 7.37925 7.43665 7.53641 7.74811 7.79238 8.34685 8.81839 8.87211 9.37680 9.48618 10.98264 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.018860 B = 0.004825 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.304527 B = 5801.662318 C = 6660.094509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.078 3.922 3 Si 0.887 3.113 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.283 1.283 7 C -0.502 4.502 8 H 0.060 0.940 9 C 0.028 3.972 10 C 0.184 3.816 11 N -0.713 5.713 12 C 0.698 3.302 13 O -0.610 6.610 14 N -0.746 5.746 15 C 0.201 3.799 16 H 0.087 0.913 17 C -0.133 4.133 18 C -0.119 4.119 19 C -0.089 4.089 20 C -0.145 4.145 21 H 0.101 0.899 22 C -0.173 4.173 23 C -0.149 4.149 24 H 0.103 0.897 25 C -0.211 4.211 26 C -0.152 4.152 27 H 0.261 0.739 28 H 0.064 0.936 29 H 0.032 0.968 30 H 0.400 0.600 31 H 0.393 0.607 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.900 -4.462 -13.539 15.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.127 4.127 3 Si 0.715 3.285 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.209 1.209 7 C -0.540 4.540 8 H 0.078 0.922 9 C 0.028 3.972 10 C 0.060 3.940 11 N -0.366 5.366 12 C 0.398 3.602 13 O -0.490 6.490 14 N -0.402 5.402 15 C 0.095 3.905 16 H 0.105 0.895 17 C -0.172 4.172 18 C -0.156 4.156 19 C -0.126 4.126 20 C -0.163 4.163 21 H 0.119 0.881 22 C -0.211 4.211 23 C -0.168 4.168 24 H 0.121 0.879 25 C -0.248 4.248 26 C -0.190 4.190 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.051 0.949 30 H 0.235 0.765 31 H 0.226 0.774 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.111 0.889 39 H 0.115 0.885 40 H 0.084 0.916 41 H 0.095 0.905 42 H 0.100 0.900 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.725 -4.834 -13.611 15.537 hybrid contribution 1.208 1.386 0.209 1.851 sum 6.933 -3.447 -13.402 15.478 Atomic orbital electron populations 1.69992 1.05921 1.26770 1.47765 1.24977 0.94728 0.98838 0.94194 0.86623 0.80199 0.84004 0.77676 1.19695 1.21074 1.20939 1.20308 0.92870 0.88597 1.52216 0.92164 1.19051 0.98216 0.93940 0.86033 1.20679 0.91540 0.96473 0.85314 1.45113 1.22323 1.62777 1.06395 1.16049 0.83708 0.79635 0.80811 1.90843 1.23830 1.50602 1.83706 1.45114 1.20855 1.66580 1.07616 1.19796 0.92951 0.97431 0.80345 0.89505 1.22013 0.98929 0.95800 1.00410 1.21530 0.97618 0.97653 0.98848 1.21070 0.97484 0.95533 0.98551 1.22235 0.99153 0.90775 1.04122 0.88103 1.23101 1.02705 0.99732 0.95528 1.22024 0.99638 1.02754 0.92385 0.87875 1.23078 0.98326 0.95686 1.07735 1.22494 0.92569 1.01175 1.02786 0.92908 0.91785 0.94929 0.76488 0.77388 0.91584 0.90726 0.91316 0.92035 0.91746 0.91822 0.88862 0.88492 0.91608 0.90472 0.89965 0.91673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.96 12.97 55.43 0.72 -23.24 16 2 C 0.08 2.02 5.39 -17.82 -0.10 1.92 16 3 Si 0.89 20.19 29.55 -169.99 -5.02 15.17 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.50 -12.65 7.43 -34.44 -0.26 -12.91 16 8 H 0.06 1.49 7.82 -52.49 -0.41 1.08 16 9 C 0.03 0.67 1.71 -155.66 -0.27 0.40 16 10 C 0.18 4.27 5.75 -4.04 -0.02 4.25 16 11 N -0.71 -14.73 5.34 -65.23 -0.35 -15.08 16 12 C 0.70 13.97 8.51 -86.92 -0.74 13.23 16 13 O -0.61 -14.37 16.01 5.29 0.08 -14.29 16 14 N -0.75 -11.37 4.32 -59.21 -0.26 -11.63 16 15 C 0.20 2.70 2.68 -68.47 -0.18 2.52 16 16 H 0.09 1.34 7.58 -51.93 -0.39 0.94 16 17 C -0.13 -1.75 5.32 -26.64 -0.14 -1.89 16 18 C -0.12 -1.41 5.90 -26.64 -0.16 -1.56 16 19 C -0.09 -0.85 5.83 -26.95 -0.16 -1.01 16 20 C -0.14 -1.34 6.19 -90.91 -0.56 -1.90 16 21 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 22 C -0.17 -1.53 9.66 -26.75 -0.26 -1.79 16 23 C -0.15 -1.56 5.45 -91.92 -0.50 -2.06 16 24 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 25 C -0.21 -4.45 9.88 -26.74 -0.26 -4.71 16 26 C -0.15 -3.49 9.51 -26.73 -0.25 -3.75 16 27 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 28 H 0.06 1.69 8.14 -51.93 -0.42 1.26 16 29 H 0.03 0.74 7.94 -51.93 -0.41 0.32 16 30 H 0.40 7.78 7.47 -40.82 -0.30 7.48 16 31 H 0.39 5.18 8.46 -40.82 -0.35 4.84 16 32 H 0.07 0.76 7.11 -51.93 -0.37 0.39 16 33 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.07 0.89 7.26 -51.93 -0.38 0.52 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.57 8.06 -51.93 -0.42 0.15 16 38 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.10 0.85 7.26 -51.93 -0.38 0.47 16 40 H 0.07 1.28 8.08 -51.93 -0.42 0.86 16 41 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 42 H 0.08 2.00 8.14 -51.93 -0.42 1.57 16 43 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 345.51 15.07 5.21 5.21 Total: -1.00 -29.15 345.51 -10.67 -39.81 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: -7.19 Total: 13.31 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: -3.86 Total: -9.27 kcal Atomic # 7 Polarization: -50.06 SS G_CDS: 0.12 Total: -49.95 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: 0.08 Total: -14.29 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.15 -10.67 -39.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565936838.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.454 kcal (2) G-P(sol) polarization free energy of solvation -29.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds