Wall clock time and date at job start Tue Mar 31 2020 00:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 119.99542 * 2 1 4 4 H 1.48504 * 109.46498 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47147 * 299.99348 * 3 2 1 6 6 H 1.48491 * 109.47134 * 59.99965 * 3 2 1 7 7 C 1.37877 * 120.00115 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99848 * 172.92750 * 7 2 1 9 9 C 1.50703 * 120.00184 * 352.91483 * 7 2 1 10 10 C 1.52998 * 115.54500 * 84.53644 * 9 7 2 11 11 N 1.46496 * 109.47499 * 39.68213 * 10 9 7 12 12 C 1.34770 * 120.00457 * 181.04685 * 11 10 9 13 13 O 1.21592 * 119.99927 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00285 * 180.02562 * 12 11 10 15 15 C 1.46504 * 120.00147 * 179.97438 * 14 12 11 16 16 H 1.09000 * 109.23273 * 324.48839 * 15 14 12 17 17 C 1.52872 * 109.26520 * 83.97271 * 15 14 12 18 18 C 1.53302 * 108.59141 * 65.37638 * 17 15 14 19 19 C 1.52877 * 108.57898 * 74.44240 * 18 17 15 20 20 C 1.52706 * 110.15509 * 305.47816 * 19 18 17 21 21 H 1.08999 * 114.91623 * 232.15776 * 20 19 18 22 22 C 1.53649 * 116.02922 * 90.20030 * 20 19 18 23 23 C 1.52070 * 109.26612 * 204.99979 * 15 14 12 24 24 H 1.08991 * 114.63959 * 46.58352 * 23 15 14 25 25 C 1.52992 * 117.52110 * 230.24265 * 9 7 2 26 26 C 1.52998 * 60.00300 * 107.47957 * 25 9 7 27 27 H 0.97001 * 120.00248 * 5.03796 * 1 2 3 28 28 H 1.09003 * 109.47158 * 279.68363 * 10 9 7 29 29 H 1.08997 * 109.46785 * 159.68249 * 10 9 7 30 30 H 0.97009 * 119.99547 * 1.05104 * 11 10 9 31 31 H 0.96995 * 119.99701 * 0.02562 * 14 12 11 32 32 H 1.09001 * 109.61562 * 185.11449 * 17 15 14 33 33 H 1.09007 * 109.61738 * 305.64662 * 17 15 14 34 34 H 1.08997 * 109.61901 * 314.71519 * 18 17 15 35 35 H 1.09002 * 109.76735 * 194.26101 * 18 17 15 36 36 H 1.09001 * 109.35453 * 185.26727 * 19 18 17 37 37 H 1.09007 * 109.24160 * 65.61929 * 19 18 17 38 38 H 1.09001 * 117.53645 * 140.93761 * 22 20 19 39 39 H 1.09003 * 117.54463 * 355.69412 * 22 20 19 40 40 H 1.08996 * 117.49870 * 214.97345 * 25 9 7 41 41 H 1.09003 * 117.50201 * 359.97438 * 25 9 7 42 42 H 1.09001 * 117.49901 * 252.50765 * 26 25 9 43 43 H 1.09002 * 117.50030 * 107.48757 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0784 -1.1975 -0.1157 9 6 1.2598 -2.4943 0.1599 10 6 0.6735 -3.0817 -1.1255 11 7 1.6224 -2.8935 -2.2256 12 6 1.3084 -3.3164 -3.4662 13 8 0.2377 -3.8545 -3.6722 14 7 2.1816 -3.1437 -4.4782 15 6 1.8405 -3.6038 -5.8266 16 1 1.2618 -4.5248 -5.7560 17 6 1.0031 -2.5342 -6.5278 18 6 1.8714 -1.2867 -6.7274 19 6 2.8615 -1.5586 -7.8601 20 6 3.6573 -2.8291 -7.5697 21 1 4.7397 -2.7174 -7.6323 22 6 3.0547 -4.1386 -8.1018 23 6 3.1198 -3.8732 -6.6035 24 1 3.8682 -4.4502 -6.0604 25 6 1.7704 -3.4758 1.2165 26 6 0.4722 -2.7022 1.4550 27 1 -0.4850 0.8368 -0.0738 28 1 -0.2624 -2.5757 -1.3624 29 1 0.4857 -4.1463 -0.9857 30 1 2.4768 -2.4646 -2.0611 31 1 3.0362 -2.7154 -4.3136 32 1 0.6698 -2.9071 -7.4963 33 1 0.1391 -2.2840 -5.9121 34 1 2.4167 -1.0695 -5.8090 35 1 1.2410 -0.4367 -6.9885 36 1 3.5468 -0.7158 -7.9509 37 1 2.3136 -1.6810 -8.7945 38 1 3.7412 -4.8788 -8.5128 39 1 2.0772 -4.0854 -8.5811 40 1 1.6888 -4.5401 0.9960 41 1 2.6456 -3.1815 1.7957 42 1 0.4931 -1.8987 2.1913 43 1 -0.4636 -3.2575 1.3914 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565936838.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:28:05 Heat of formation + Delta-G solvation = -12.926381 kcal Electronic energy + Delta-G solvation = -22193.728760 eV Core-core repulsion = 19045.957072 eV Total energy + Delta-G solvation = -3147.771688 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.41079 -40.01120 -38.45973 -35.31673 -34.85266 -33.98899 -33.59746 -30.49289 -27.89351 -27.06140 -25.21743 -23.65544 -22.93071 -22.05683 -21.64574 -21.22884 -19.61237 -19.02403 -18.01148 -17.31233 -16.80374 -16.55927 -16.38786 -15.80260 -15.44769 -15.17076 -14.89793 -14.60039 -14.37280 -14.25659 -13.87234 -13.56122 -13.43627 -13.20414 -12.92470 -12.83248 -12.38894 -12.30760 -12.07534 -12.00313 -11.83952 -11.54083 -11.43236 -11.17648 -10.85148 -10.79299 -10.58662 -10.45910 -10.23287 -9.97343 -9.47094 -8.08606 -6.22148 1.41398 1.46028 1.54786 1.87532 2.32082 2.42922 2.86750 3.19339 3.40793 3.61812 3.66604 3.82963 3.99519 4.05103 4.18072 4.27857 4.28711 4.44402 4.55152 4.59612 4.69303 4.70079 4.76337 4.84788 4.89326 4.97667 5.01804 5.08328 5.08842 5.20103 5.27912 5.32162 5.34775 5.36056 5.46970 5.51026 5.63459 5.69204 5.77430 5.83404 6.24433 6.39405 6.85850 7.32491 7.47864 7.76888 8.99127 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.018860 B = 0.004825 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.304527 B = 5801.662318 C = 6660.094509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.030 3.970 3 Si 0.948 3.052 4 H -0.258 1.258 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.501 4.501 8 H 0.066 0.934 9 C 0.005 3.995 10 C 0.199 3.801 11 N -0.711 5.711 12 C 0.695 3.305 13 O -0.649 6.649 14 N -0.727 5.727 15 C 0.199 3.801 16 H 0.063 0.937 17 C -0.130 4.130 18 C -0.117 4.117 19 C -0.085 4.085 20 C -0.138 4.138 21 H 0.118 0.882 22 C -0.160 4.160 23 C -0.161 4.161 24 H 0.110 0.890 25 C -0.180 4.180 26 C -0.162 4.162 27 H 0.257 0.743 28 H 0.022 0.978 29 H 0.036 0.964 30 H 0.407 0.593 31 H 0.406 0.594 32 H 0.084 0.916 33 H 0.034 0.966 34 H 0.054 0.946 35 H 0.060 0.940 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.112 0.888 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.063 0.937 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.565 -4.623 -14.986 18.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.171 4.171 3 Si 0.774 3.226 4 H -0.182 1.182 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.539 4.539 8 H 0.084 0.916 9 C 0.004 3.996 10 C 0.073 3.927 11 N -0.365 5.365 12 C 0.395 3.605 13 O -0.532 6.532 14 N -0.382 5.382 15 C 0.094 3.906 16 H 0.082 0.918 17 C -0.169 4.169 18 C -0.155 4.155 19 C -0.122 4.122 20 C -0.156 4.156 21 H 0.136 0.864 22 C -0.198 4.198 23 C -0.180 4.180 24 H 0.128 0.872 25 C -0.217 4.217 26 C -0.200 4.200 27 H 0.066 0.934 28 H 0.040 0.960 29 H 0.054 0.946 30 H 0.243 0.757 31 H 0.241 0.759 32 H 0.103 0.897 33 H 0.053 0.947 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.130 0.870 39 H 0.116 0.884 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.082 0.918 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.453 -4.990 -15.082 17.995 hybrid contribution 0.346 1.394 0.637 1.571 sum 8.799 -3.596 -14.445 17.292 Atomic orbital electron populations 1.70129 1.07434 1.27155 1.49546 1.25675 0.95286 1.01940 0.94210 0.85665 0.79692 0.80197 0.77017 1.18202 1.21431 1.21433 1.20584 0.93171 0.89217 1.50911 0.91551 1.19127 0.99361 0.94703 0.86428 1.20340 0.90384 0.95932 0.86003 1.44946 1.22106 1.63118 1.06303 1.16220 0.83745 0.79255 0.81271 1.90813 1.25754 1.52332 1.84301 1.45005 1.20381 1.65501 1.07348 1.19895 0.94693 0.96345 0.79626 0.91843 1.21959 0.97776 0.96662 1.00464 1.21508 0.97851 0.96726 0.99414 1.21063 0.97145 0.96295 0.97707 1.22318 1.00033 0.90502 1.02745 0.86362 1.23215 1.03160 0.99851 0.93546 1.21872 0.98176 1.04660 0.93261 0.87222 1.23075 0.97218 0.96271 1.05095 1.22428 0.93963 1.01473 1.02142 0.93352 0.95983 0.94594 0.75688 0.75851 0.89718 0.94733 0.92690 0.92133 0.90440 0.90710 0.87005 0.88421 0.89412 0.89560 0.91788 0.91237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.09 12.97 21.45 0.28 -50.82 16 2 C 0.03 1.57 5.39 84.65 0.46 2.03 16 3 Si 0.95 41.38 29.55 68.60 2.03 43.41 16 4 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 5 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 7 C -0.50 -25.00 7.43 25.60 0.19 -24.80 16 8 H 0.07 3.17 7.82 -2.91 -0.02 3.15 16 9 C 0.00 0.21 1.71 -52.93 -0.09 0.12 16 10 C 0.20 9.41 5.75 86.38 0.50 9.90 16 11 N -0.71 -29.67 5.34 -478.55 -2.55 -32.22 16 12 C 0.70 28.39 8.51 179.06 1.52 29.91 16 13 O -0.65 -31.76 16.01 -4.00 -0.06 -31.83 16 14 N -0.73 -22.07 4.32 -459.49 -1.98 -24.06 16 15 C 0.20 5.31 2.68 44.64 0.12 5.43 16 16 H 0.06 2.00 7.58 -2.39 -0.02 1.98 16 17 C -0.13 -3.43 5.32 30.65 0.16 -3.26 16 18 C -0.12 -2.65 5.90 30.65 0.18 -2.47 16 19 C -0.08 -1.37 5.83 30.46 0.18 -1.19 16 20 C -0.14 -2.09 6.19 -10.98 -0.07 -2.16 16 21 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 22 C -0.16 -2.32 9.66 30.58 0.30 -2.02 16 23 C -0.16 -3.02 5.45 -11.64 -0.06 -3.08 16 24 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 25 C -0.18 -7.26 9.88 30.59 0.30 -6.96 16 26 C -0.16 -7.45 9.51 30.59 0.29 -7.16 16 27 H 0.26 14.07 8.32 -92.71 -0.77 13.30 16 28 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.04 1.65 7.94 -2.39 -0.02 1.63 16 30 H 0.41 15.64 7.47 -92.70 -0.69 14.95 16 31 H 0.41 10.28 8.46 -92.71 -0.78 9.50 16 32 H 0.08 1.88 7.11 -2.39 -0.02 1.87 16 33 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 34 H 0.05 1.38 7.26 -2.39 -0.02 1.36 16 35 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.07 1.08 8.06 -2.38 -0.02 1.06 16 38 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.10 1.42 7.26 -2.39 -0.02 1.41 16 40 H 0.09 3.18 8.08 -2.39 -0.02 3.16 16 41 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 42 H 0.06 3.15 8.14 -2.39 -0.02 3.13 16 43 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 Total: -1.00 -64.01 345.51 1.21 -62.80 By element: Atomic # 1 Polarization: 38.90 SS G_CDS: -0.47 Total: 38.43 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: 3.98 Total: -5.72 kcal Atomic # 7 Polarization: -102.83 SS G_CDS: -4.26 Total: -107.09 kcal Atomic # 8 Polarization: -31.76 SS G_CDS: -0.06 Total: -31.83 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Total: -64.01 1.21 -62.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565936838.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.875 kcal (2) G-P(sol) polarization free energy of solvation -64.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds