Wall clock time and date at job start Tue Mar 31 2020 00:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 120.00561 * 2 1 4 4 H 1.48497 * 109.46982 * 266.20211 * 3 2 1 5 5 H 1.48501 * 109.47536 * 146.19925 * 3 2 1 6 6 H 1.48506 * 109.47188 * 26.20152 * 3 2 1 7 7 C 1.37881 * 119.99308 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00298 * 355.76089 * 7 2 1 9 9 C 1.50707 * 119.99644 * 175.76346 * 7 2 1 10 10 C 1.53000 * 115.54347 * 298.96057 * 9 7 2 11 11 N 1.46506 * 109.47345 * 294.69278 * 10 9 7 12 12 C 1.34769 * 120.00056 * 184.81548 * 11 10 9 13 13 O 1.21593 * 120.00142 * 5.00880 * 12 11 10 14 14 N 1.34776 * 120.00260 * 185.01217 * 12 11 10 15 15 C 1.49732 * 126.15804 * 4.69570 * 14 12 11 16 16 C 1.52025 * 102.04900 * 153.32433 * 15 14 12 17 17 H 1.09001 * 112.10224 * 289.45233 * 16 15 14 18 18 C 1.51623 * 122.88714 * 152.53075 * 16 15 14 19 19 C 1.56316 * 101.79103 * 208.85535 * 18 16 15 20 20 C 1.55964 * 105.76207 * 25.53470 * 19 18 16 21 21 C 1.49852 * 103.99872 * 7.08338 * 20 19 18 22 22 H 1.09000 * 108.89108 * 77.47818 * 21 20 19 23 23 C 1.49470 * 126.16599 * 185.01186 * 14 12 11 24 24 C 1.52997 * 117.49835 * 153.25873 * 9 7 2 25 25 C 1.52996 * 117.50043 * 84.63281 * 9 7 2 26 26 H 0.97005 * 119.99530 * 359.97438 * 1 2 3 27 27 H 1.08991 * 109.47815 * 54.69882 * 10 9 7 28 28 H 1.09005 * 109.46589 * 174.69895 * 10 9 7 29 29 H 0.96999 * 119.99373 * 4.81421 * 11 10 9 30 30 H 1.08994 * 110.86423 * 271.59003 * 15 14 12 31 31 H 1.09006 * 110.85948 * 35.24611 * 15 14 12 32 32 H 1.09000 * 110.96312 * 90.73010 * 18 16 15 33 33 H 1.08995 * 110.96128 * 326.98064 * 18 16 15 34 34 H 1.08997 * 110.19523 * 266.45462 * 19 18 16 35 35 H 1.09005 * 110.18682 * 144.60376 * 19 18 16 36 36 H 1.08997 * 110.52227 * 248.45369 * 20 19 18 37 37 H 1.08999 * 110.64184 * 125.77176 * 20 19 18 38 38 H 1.08996 * 110.42921 * 292.40140 * 23 14 12 39 39 H 1.08998 * 110.43137 * 54.90001 * 23 14 12 40 40 H 1.08996 * 117.49754 * 359.97438 * 24 9 7 41 41 H 1.09003 * 117.50005 * 145.01827 * 24 9 7 42 42 H 1.09005 * 117.49207 * 214.97772 * 25 9 7 43 43 H 1.08997 * 117.50146 * 359.97438 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.5771 1.9998 -1.3970 5 1 3.5044 1.4645 0.7789 6 1 1.4090 2.6745 0.6182 7 6 2.0044 -1.1942 0.0005 8 1 1.4666 -2.1280 0.0701 9 6 3.5084 -1.1961 -0.0959 10 6 4.0887 -0.5741 -1.3676 11 7 3.7027 -1.3826 -2.5268 12 6 4.1825 -1.0800 -3.7493 13 8 5.0058 -0.1943 -3.8772 14 7 3.7499 -1.7590 -4.8301 15 6 2.6748 -2.8011 -4.8467 16 6 2.1590 -2.7022 -6.2734 17 1 1.6058 -1.7791 -6.4464 18 6 1.5248 -3.8706 -7.0023 19 6 1.8756 -3.5470 -8.4908 20 6 3.1638 -2.6691 -8.4412 21 6 3.5641 -2.6941 -6.9974 22 1 4.0462 -3.6475 -6.7813 23 6 4.2613 -1.6123 -6.2269 24 6 4.2538 -2.3853 0.5132 25 6 4.2997 -1.0196 1.2016 26 1 -0.4850 0.8401 0.0004 27 1 3.7026 0.4382 -1.4859 28 1 5.1758 -0.5419 -1.2928 29 1 3.1018 -2.1357 -2.4143 30 1 3.0892 -3.7895 -4.6488 31 1 1.8881 -2.5586 -4.1322 32 1 0.4455 -3.8856 -6.8504 33 1 1.9739 -4.8140 -6.6921 34 1 1.0609 -2.9935 -8.9577 35 1 2.0691 -4.4681 -9.0406 36 1 2.9441 -1.6499 -8.7593 37 1 3.9478 -3.1017 -9.0627 38 1 4.0008 -0.6322 -6.6264 39 1 5.3407 -1.7608 -6.2545 40 1 3.6565 -3.1660 0.9840 41 1 5.1580 -2.7249 0.0079 42 1 5.2341 -0.4607 1.1491 43 1 3.7326 -0.9017 2.1249 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571459387.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:44 Heat of formation + Delta-G solvation = 8.920549 kcal Electronic energy + Delta-G solvation = -22344.345670 eV Core-core repulsion = 19197.521336 eV Total energy + Delta-G solvation = -3146.824334 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.59093 -38.77041 -36.98525 -34.74867 -33.30454 -32.18486 -30.43165 -29.37829 -26.74564 -26.17438 -24.97385 -23.10168 -21.56317 -20.46215 -19.94866 -19.49445 -19.13369 -17.45936 -16.71881 -16.18538 -15.44218 -15.06934 -14.95808 -14.80900 -14.26082 -13.98176 -13.76886 -13.18092 -13.04416 -12.75356 -12.54726 -12.34495 -12.16666 -11.93029 -11.56924 -11.39932 -11.36265 -11.05194 -10.89571 -10.64344 -10.59886 -10.52978 -10.22353 -10.15344 -9.75394 -9.49640 -9.16361 -8.79945 -8.55138 -8.51051 -8.01026 -6.17540 -4.19627 2.88322 3.31255 3.39756 3.45282 3.66872 3.84009 4.37025 4.40464 4.50551 4.64089 4.86830 4.95423 5.03864 5.14137 5.20356 5.22387 5.35718 5.45657 5.49759 5.57997 5.69908 5.70709 5.76560 5.81856 5.83979 5.90424 5.99215 6.02759 6.16447 6.17328 6.24777 6.28783 6.33053 6.47010 6.56077 6.72649 6.95797 7.09684 7.26788 7.49443 7.68085 8.41523 8.54158 8.83633 9.13445 9.46375 10.93457 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021815 B = 0.004733 C = 0.004519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.237198 B = 5914.293939 C = 6194.932521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.084 3.916 3 Si 0.870 3.130 4 H -0.275 1.275 5 H -0.253 1.253 6 H -0.294 1.294 7 C -0.488 4.488 8 H 0.078 0.922 9 C -0.018 4.018 10 C 0.168 3.832 11 N -0.717 5.717 12 C 0.719 3.281 13 O -0.604 6.604 14 N -0.649 5.649 15 C 0.115 3.885 16 C -0.121 4.121 17 H 0.091 0.909 18 C -0.105 4.105 19 C -0.122 4.122 20 C -0.099 4.099 21 C -0.128 4.128 22 H 0.075 0.925 23 C 0.152 3.848 24 C -0.180 4.180 25 C -0.187 4.187 26 H 0.266 0.734 27 H 0.055 0.945 28 H 0.048 0.952 29 H 0.402 0.598 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.085 0.915 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.395 -8.148 -14.552 17.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.120 4.120 3 Si 0.698 3.302 4 H -0.201 1.201 5 H -0.177 1.177 6 H -0.220 1.220 7 C -0.525 4.525 8 H 0.096 0.904 9 C -0.019 4.019 10 C 0.044 3.956 11 N -0.370 5.370 12 C 0.421 3.579 13 O -0.484 6.484 14 N -0.390 5.390 15 C -0.008 4.008 16 C -0.140 4.140 17 H 0.109 0.891 18 C -0.143 4.143 19 C -0.159 4.159 20 C -0.137 4.137 21 C -0.147 4.147 22 H 0.094 0.906 23 C 0.030 3.970 24 C -0.217 4.217 25 C -0.225 4.225 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.237 0.763 30 H 0.088 0.912 31 H 0.102 0.898 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.103 0.897 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.857 -7.304 -14.507 16.953 hybrid contribution 0.044 0.616 0.136 0.632 sum 4.900 -6.689 -14.371 16.592 Atomic orbital electron populations 1.69884 1.06334 1.27284 1.49460 1.24898 0.94520 0.99039 0.93513 0.87040 0.80876 0.83435 0.78802 1.20122 1.17700 1.22046 1.20235 0.86316 0.94508 1.51444 0.90428 1.19617 0.94950 0.98227 0.89137 1.21002 0.96937 0.93799 0.83840 1.44990 1.51716 1.35137 1.05144 1.15520 0.81204 0.81239 0.79930 1.90863 1.37826 1.34461 1.85232 1.48851 1.40362 1.42935 1.06843 1.21850 0.90153 0.91699 0.97055 1.22769 0.96293 1.00369 0.94548 0.89091 1.21901 1.00712 0.97303 0.94433 1.22949 0.97067 0.99476 0.96432 1.21347 0.97350 1.00623 0.94372 1.21945 0.97107 0.99815 0.95853 0.90638 1.20780 0.97849 0.98097 0.80321 1.22759 1.01476 0.91859 1.05578 1.23036 1.01265 0.99450 0.98752 0.92463 0.92702 0.93344 0.76266 0.91239 0.89832 0.91090 0.91071 0.91456 0.91596 0.91366 0.91436 0.91758 0.91458 0.89667 0.90897 0.91106 0.89239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.32 13.96 55.43 0.77 -25.54 16 2 C 0.08 2.33 5.46 -17.82 -0.10 2.23 16 3 Si 0.87 21.82 24.86 -169.99 -4.23 17.59 16 4 H -0.27 -7.09 6.66 56.52 0.38 -6.71 16 5 H -0.25 -6.02 6.22 56.52 0.35 -5.67 16 6 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 7 C -0.49 -12.89 9.19 -34.44 -0.32 -13.21 16 8 H 0.08 2.21 8.06 -52.49 -0.42 1.78 16 9 C -0.02 -0.41 0.86 -155.66 -0.13 -0.54 16 10 C 0.17 3.80 5.09 -4.04 -0.02 3.78 16 11 N -0.72 -14.85 5.43 -65.22 -0.35 -15.20 16 12 C 0.72 14.89 8.52 -86.93 -0.74 14.15 16 13 O -0.60 -14.58 16.70 5.28 0.09 -14.49 16 14 N -0.65 -10.57 3.43 -176.58 -0.60 -11.18 16 15 C 0.11 1.49 6.25 -2.74 -0.02 1.47 16 16 C -0.12 -1.29 3.19 -89.03 -0.28 -1.57 16 17 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 18 C -0.11 -0.88 6.60 -25.65 -0.17 -1.04 16 19 C -0.12 -0.88 6.95 -23.37 -0.16 -1.05 16 20 C -0.10 -0.79 6.72 -26.71 -0.18 -0.97 16 21 C -0.13 -1.29 2.63 -90.89 -0.24 -1.53 16 22 H 0.08 0.74 7.94 -51.93 -0.41 0.33 16 23 C 0.15 2.04 6.85 -3.88 -0.03 2.01 16 24 C -0.18 -3.51 9.96 -26.73 -0.27 -3.78 16 25 C -0.19 -3.88 8.66 -26.73 -0.23 -4.11 16 26 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 27 H 0.06 1.37 4.17 -51.93 -0.22 1.16 16 28 H 0.05 1.06 8.05 -51.93 -0.42 0.64 16 29 H 0.40 7.80 7.05 -40.82 -0.29 7.51 16 30 H 0.07 0.80 8.13 -51.93 -0.42 0.37 16 31 H 0.08 1.18 7.59 -51.93 -0.39 0.79 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 41 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 43 H 0.09 1.89 8.14 -51.93 -0.42 1.46 16 LS Contribution 336.43 15.07 5.07 5.07 Total: -1.00 -31.55 336.43 -9.42 -40.96 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -7.28 Total: 6.94 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: -2.88 Total: -4.16 kcal Atomic # 7 Polarization: -51.73 SS G_CDS: -0.19 Total: -51.92 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: 0.09 Total: -14.49 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.23 Total: 17.59 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.55 -9.42 -40.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571459387.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.885 kcal (2) G-P(sol) polarization free energy of solvation -31.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds