Wall clock time and date at job start Tue Mar 31 2020 00:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 120.00561 * 2 1 4 4 H 1.48497 * 109.46982 * 266.20211 * 3 2 1 5 5 H 1.48501 * 109.47536 * 146.19925 * 3 2 1 6 6 H 1.48506 * 109.47188 * 26.20152 * 3 2 1 7 7 C 1.37881 * 119.99308 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00298 * 355.76089 * 7 2 1 9 9 C 1.50707 * 119.99644 * 175.76346 * 7 2 1 10 10 C 1.53000 * 115.54347 * 298.96057 * 9 7 2 11 11 N 1.46506 * 109.47345 * 294.69278 * 10 9 7 12 12 C 1.34769 * 120.00056 * 184.81548 * 11 10 9 13 13 O 1.21593 * 120.00142 * 5.00880 * 12 11 10 14 14 N 1.34776 * 120.00260 * 185.01217 * 12 11 10 15 15 C 1.49732 * 126.15804 * 4.69570 * 14 12 11 16 16 C 1.52025 * 102.04900 * 153.32433 * 15 14 12 17 17 H 1.09001 * 112.10224 * 289.45233 * 16 15 14 18 18 C 1.51623 * 122.88714 * 152.53075 * 16 15 14 19 19 C 1.56316 * 101.79103 * 208.85535 * 18 16 15 20 20 C 1.55964 * 105.76207 * 25.53470 * 19 18 16 21 21 C 1.49852 * 103.99872 * 7.08338 * 20 19 18 22 22 H 1.09000 * 108.89108 * 77.47818 * 21 20 19 23 23 C 1.49470 * 126.16599 * 185.01186 * 14 12 11 24 24 C 1.52997 * 117.49835 * 153.25873 * 9 7 2 25 25 C 1.52996 * 117.50043 * 84.63281 * 9 7 2 26 26 H 0.97005 * 119.99530 * 359.97438 * 1 2 3 27 27 H 1.08991 * 109.47815 * 54.69882 * 10 9 7 28 28 H 1.09005 * 109.46589 * 174.69895 * 10 9 7 29 29 H 0.96999 * 119.99373 * 4.81421 * 11 10 9 30 30 H 1.08994 * 110.86423 * 271.59003 * 15 14 12 31 31 H 1.09006 * 110.85948 * 35.24611 * 15 14 12 32 32 H 1.09000 * 110.96312 * 90.73010 * 18 16 15 33 33 H 1.08995 * 110.96128 * 326.98064 * 18 16 15 34 34 H 1.08997 * 110.19523 * 266.45462 * 19 18 16 35 35 H 1.09005 * 110.18682 * 144.60376 * 19 18 16 36 36 H 1.08997 * 110.52227 * 248.45369 * 20 19 18 37 37 H 1.08999 * 110.64184 * 125.77176 * 20 19 18 38 38 H 1.08996 * 110.42921 * 292.40140 * 23 14 12 39 39 H 1.08998 * 110.43137 * 54.90001 * 23 14 12 40 40 H 1.08996 * 117.49754 * 359.97438 * 24 9 7 41 41 H 1.09003 * 117.50005 * 145.01827 * 24 9 7 42 42 H 1.09005 * 117.49207 * 214.97772 * 25 9 7 43 43 H 1.08997 * 117.50146 * 359.97438 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.5771 1.9998 -1.3970 5 1 3.5044 1.4645 0.7789 6 1 1.4090 2.6745 0.6182 7 6 2.0044 -1.1942 0.0005 8 1 1.4666 -2.1280 0.0701 9 6 3.5084 -1.1961 -0.0959 10 6 4.0887 -0.5741 -1.3676 11 7 3.7027 -1.3826 -2.5268 12 6 4.1825 -1.0800 -3.7493 13 8 5.0058 -0.1943 -3.8772 14 7 3.7499 -1.7590 -4.8301 15 6 2.6748 -2.8011 -4.8467 16 6 2.1590 -2.7022 -6.2734 17 1 1.6058 -1.7791 -6.4464 18 6 1.5248 -3.8706 -7.0023 19 6 1.8756 -3.5470 -8.4908 20 6 3.1638 -2.6691 -8.4412 21 6 3.5641 -2.6941 -6.9974 22 1 4.0462 -3.6475 -6.7813 23 6 4.2613 -1.6123 -6.2269 24 6 4.2538 -2.3853 0.5132 25 6 4.2997 -1.0196 1.2016 26 1 -0.4850 0.8401 0.0004 27 1 3.7026 0.4382 -1.4859 28 1 5.1758 -0.5419 -1.2928 29 1 3.1018 -2.1357 -2.4143 30 1 3.0892 -3.7895 -4.6488 31 1 1.8881 -2.5586 -4.1322 32 1 0.4455 -3.8856 -6.8504 33 1 1.9739 -4.8140 -6.6921 34 1 1.0609 -2.9935 -8.9577 35 1 2.0691 -4.4681 -9.0406 36 1 2.9441 -1.6499 -8.7593 37 1 3.9478 -3.1017 -9.0627 38 1 4.0008 -0.6322 -6.6264 39 1 5.3407 -1.7608 -6.2545 40 1 3.6565 -3.1660 0.9840 41 1 5.1580 -2.7249 0.0079 42 1 5.2341 -0.4607 1.1491 43 1 3.7326 -0.9017 2.1249 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571459387.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:44 Heat of formation + Delta-G solvation = -10.917076 kcal Electronic energy + Delta-G solvation = -22345.205894 eV Core-core repulsion = 19197.521336 eV Total energy + Delta-G solvation = -3147.684558 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.71040 -40.18997 -38.68584 -35.88641 -34.95686 -34.29417 -31.33294 -30.51093 -28.40443 -27.29106 -26.69593 -24.20907 -23.18376 -21.36283 -21.21348 -20.79252 -20.65792 -19.03878 -18.22729 -17.67268 -17.15668 -16.66366 -16.17748 -15.77594 -15.59334 -15.27813 -15.00008 -14.89565 -14.73967 -14.30743 -13.94084 -13.79321 -13.37362 -13.11065 -13.04013 -12.60230 -12.47853 -12.20157 -12.17210 -12.09793 -12.03237 -11.71207 -11.54010 -11.28483 -11.23814 -11.03012 -10.99145 -10.73849 -10.41078 -10.13846 -9.50175 -8.33698 -6.36073 1.29116 1.34974 1.43130 1.52493 2.10235 2.31277 2.81963 2.95348 3.10491 3.39601 3.71617 3.80828 3.99507 4.07071 4.24816 4.28095 4.31839 4.36491 4.45290 4.50013 4.52345 4.57517 4.67221 4.71022 4.75843 4.84039 4.90667 4.91829 4.98737 5.04615 5.12316 5.15943 5.23608 5.25961 5.32267 5.46823 5.49428 5.54422 5.59348 5.67240 6.04547 6.27843 6.69268 6.98356 7.31829 7.53007 8.80562 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021815 B = 0.004733 C = 0.004519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.237198 B = 5914.293939 C = 6194.932521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.038 3.962 3 Si 0.917 3.083 4 H -0.291 1.291 5 H -0.230 1.230 6 H -0.295 1.295 7 C -0.473 4.473 8 H 0.048 0.952 9 C -0.045 4.045 10 C 0.175 3.825 11 N -0.716 5.716 12 C 0.712 3.288 13 O -0.644 6.644 14 N -0.649 5.649 15 C 0.111 3.889 16 C -0.120 4.120 17 H 0.075 0.925 18 C -0.101 4.101 19 C -0.116 4.116 20 C -0.097 4.097 21 C -0.115 4.115 22 H 0.086 0.914 23 C 0.146 3.854 24 C -0.152 4.152 25 C -0.181 4.181 26 H 0.264 0.736 27 H 0.027 0.973 28 H 0.058 0.942 29 H 0.407 0.593 30 H 0.092 0.908 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.064 0.936 37 H 0.084 0.916 38 H 0.054 0.946 39 H 0.067 0.933 40 H 0.088 0.912 41 H 0.097 0.903 42 H 0.092 0.908 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.761 -9.746 -15.630 19.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.161 4.161 3 Si 0.745 3.255 4 H -0.218 1.218 5 H -0.152 1.152 6 H -0.223 1.223 7 C -0.511 4.511 8 H 0.066 0.934 9 C -0.046 4.046 10 C 0.051 3.949 11 N -0.370 5.370 12 C 0.414 3.586 13 O -0.528 6.528 14 N -0.388 5.388 15 C -0.010 4.010 16 C -0.139 4.139 17 H 0.093 0.907 18 C -0.139 4.139 19 C -0.154 4.154 20 C -0.135 4.135 21 C -0.134 4.134 22 H 0.105 0.895 23 C 0.024 3.976 24 C -0.189 4.189 25 C -0.219 4.219 26 H 0.074 0.926 27 H 0.046 0.954 28 H 0.076 0.924 29 H 0.243 0.757 30 H 0.110 0.890 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.083 0.917 37 H 0.103 0.897 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.107 0.893 41 H 0.116 0.884 42 H 0.110 0.890 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.219 -8.948 -15.602 19.031 hybrid contribution -0.387 1.032 0.440 1.186 sum 5.832 -7.916 -15.163 18.072 Atomic orbital electron populations 1.69990 1.07736 1.27773 1.52142 1.25491 0.94925 1.01738 0.93978 0.86287 0.80761 0.80457 0.78023 1.21838 1.15236 1.22257 1.20361 0.88512 0.92930 1.49251 0.93359 1.19454 0.92910 1.01922 0.90327 1.20811 0.97212 0.92647 0.84268 1.44920 1.51889 1.35104 1.05098 1.15718 0.80986 0.81282 0.80663 1.90819 1.39681 1.36310 1.85950 1.48999 1.40485 1.42568 1.06793 1.22050 0.89002 0.91564 0.98355 1.22739 0.96969 1.01075 0.93102 0.90662 1.21930 1.00780 0.96497 0.94684 1.22931 0.96612 1.00137 0.95678 1.21398 0.98261 1.00968 0.92833 1.21897 0.95882 0.98658 0.96935 0.89541 1.20975 0.98271 0.99080 0.79283 1.22806 1.01400 0.91060 1.03669 1.23087 1.01339 1.00486 0.97013 0.92638 0.95449 0.92397 0.75721 0.89033 0.91569 0.90858 0.89898 0.91116 0.89813 0.91676 0.89730 0.92718 0.91461 0.89327 0.88426 0.89002 0.89690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.70 13.96 21.45 0.30 -56.40 16 2 C 0.04 2.13 5.46 84.66 0.46 2.59 16 3 Si 0.92 45.54 24.86 68.60 1.71 47.25 16 4 H -0.29 -15.12 6.66 99.48 0.66 -14.46 16 5 H -0.23 -10.39 6.22 99.48 0.62 -9.77 16 6 H -0.30 -14.59 7.11 99.48 0.71 -13.89 16 7 C -0.47 -25.17 9.19 25.60 0.24 -24.94 16 8 H 0.05 2.80 8.06 -2.92 -0.02 2.78 16 9 C -0.04 -1.97 0.86 -52.93 -0.05 -2.02 16 10 C 0.18 7.80 5.09 86.38 0.44 8.24 16 11 N -0.72 -29.64 5.43 -478.53 -2.60 -32.24 16 12 C 0.71 29.63 8.52 179.06 1.52 31.15 16 13 O -0.64 -31.48 16.70 -4.01 -0.07 -31.55 16 14 N -0.65 -21.00 3.43 -830.85 -2.85 -23.85 16 15 C 0.11 2.80 6.25 85.43 0.53 3.33 16 16 C -0.12 -2.39 3.19 -9.76 -0.03 -2.42 16 17 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 18 C -0.10 -1.41 6.60 31.30 0.21 -1.20 16 19 C -0.12 -1.32 6.95 32.77 0.23 -1.09 16 20 C -0.10 -1.27 6.72 30.61 0.21 -1.07 16 21 C -0.11 -2.07 2.63 -10.97 -0.03 -2.10 16 22 H 0.09 1.42 7.94 -2.39 -0.02 1.40 16 23 C 0.15 3.81 6.85 84.84 0.58 4.39 16 24 C -0.15 -5.54 9.96 30.59 0.30 -5.23 16 25 C -0.18 -7.03 8.66 30.59 0.26 -6.76 16 26 H 0.26 15.29 8.31 -92.70 -0.77 14.52 16 27 H 0.03 1.37 4.17 -2.39 -0.01 1.36 16 28 H 0.06 2.45 8.05 -2.38 -0.02 2.43 16 29 H 0.41 15.78 7.05 -92.71 -0.65 15.13 16 30 H 0.09 1.92 8.13 -2.39 -0.02 1.90 16 31 H 0.07 1.89 7.59 -2.38 -0.02 1.87 16 32 H 0.07 1.01 8.14 -2.39 -0.02 1.00 16 33 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 36 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.08 0.87 8.14 -2.39 -0.02 0.86 16 38 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 41 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 42 H 0.09 3.21 8.14 -2.38 -0.02 3.19 16 43 H 0.08 3.38 8.14 -2.39 -0.02 3.36 16 Total: -1.00 -69.26 336.43 1.58 -67.69 By element: Atomic # 1 Polarization: 26.03 SS G_CDS: 0.20 Total: 26.23 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: 4.88 Total: 2.87 kcal Atomic # 7 Polarization: -107.34 SS G_CDS: -5.15 Total: -112.49 kcal Atomic # 8 Polarization: -31.48 SS G_CDS: -0.07 Total: -31.55 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.71 Total: 47.25 kcal Total: -69.26 1.58 -67.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571459387.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.770 kcal (2) G-P(sol) polarization free energy of solvation -69.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds