Wall clock time and date at job start Tue Mar 31 2020 00:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86808 * 119.99868 * 2 1 4 4 H 1.48503 * 109.46978 * 240.00206 * 3 2 1 5 5 H 1.48498 * 109.46772 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46800 * 120.00318 * 3 2 1 7 7 C 1.37874 * 120.00390 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00140 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99849 * 359.97438 * 7 2 1 10 10 H 1.08997 * 110.67128 * 61.78297 * 9 7 2 11 11 C 1.54888 * 110.75211 * 298.54532 * 9 7 2 12 12 C 1.54264 * 104.19525 * 203.74491 * 11 9 7 13 13 C 1.53878 * 106.59983 * 23.60953 * 12 11 9 14 14 H 1.08999 * 110.03195 * 240.67151 * 13 12 11 15 15 N 1.46495 * 110.03257 * 119.28775 * 13 12 11 16 16 C 1.34775 * 120.00341 * 86.45059 * 15 13 12 17 17 O 1.21583 * 119.99759 * 0.02562 * 16 15 13 18 18 N 1.34780 * 120.00358 * 179.97438 * 16 15 13 19 19 C 1.46495 * 120.00345 * 180.02562 * 18 16 15 20 20 C 1.52996 * 109.47343 * 180.02562 * 19 18 16 21 21 H 1.09002 * 115.54951 * 330.58548 * 20 19 18 22 22 C 1.53002 * 117.49888 * 116.25574 * 20 19 18 23 23 C 1.52993 * 117.49874 * 184.91438 * 20 19 18 24 24 C 1.52992 * 138.58906 * 121.60000 * 23 20 19 25 25 C 1.52989 * 138.58986 * 23.37721 * 23 20 19 26 26 C 1.54264 * 106.59642 * 0.02562 * 13 12 11 27 27 H 0.97000 * 120.00108 * 359.97438 * 1 2 3 28 28 H 1.08993 * 110.48718 * 85.06721 * 11 9 7 29 29 H 1.09001 * 110.60290 * 322.47631 * 11 9 7 30 30 H 1.09008 * 110.03145 * 264.32844 * 12 11 9 31 31 H 1.08995 * 110.03743 * 142.89784 * 12 11 9 32 32 H 0.97001 * 120.00015 * 266.45709 * 15 13 12 33 33 H 0.96999 * 119.99445 * 0.02562 * 18 16 15 34 34 H 1.09002 * 109.47043 * 59.99999 * 19 18 16 35 35 H 1.09004 * 109.47109 * 300.00552 * 19 18 16 36 36 H 1.09000 * 117.49996 * 215.00804 * 22 20 19 37 37 H 1.09006 * 117.49663 * 0.02562 * 22 20 19 38 38 H 1.08996 * 117.49738 * 336.59046 * 24 23 20 39 39 H 1.09004 * 117.50094 * 121.61400 * 24 23 20 40 40 H 1.09003 * 117.50442 * 238.38012 * 25 23 20 41 41 H 1.09001 * 117.50183 * 23.40944 * 25 23 20 42 42 H 1.09000 * 110.48701 * 95.06878 * 26 13 12 43 43 H 1.09000 * 110.48496 * 217.71354 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6408 -2.5911 -0.8989 11 6 0.3778 -2.6287 1.2721 12 6 0.1833 -4.1493 1.4443 13 6 1.3583 -4.8278 0.7184 14 1 0.9843 -5.4664 -0.0818 15 7 2.1437 -5.6208 1.6673 16 6 1.7897 -6.8928 1.9377 17 8 0.8188 -7.3823 1.3937 18 7 2.5126 -7.6226 2.8103 19 6 2.1282 -9.0054 3.1037 20 6 3.1059 -9.6023 4.1179 21 1 4.1188 -9.2009 4.0868 22 6 2.5477 -10.0064 5.4840 23 6 2.9429 -11.0824 4.4695 24 6 3.7681 -12.3699 4.4250 25 6 2.3497 -12.3500 3.8516 26 6 2.2262 -3.6957 0.1311 27 1 -0.4850 0.8400 0.0004 28 1 -0.5832 -2.1352 1.1272 29 1 0.8942 -2.2100 2.1359 30 1 -0.7610 -4.4581 0.9957 31 1 0.1974 -4.4102 2.5024 32 1 2.9185 -5.2304 2.1011 33 1 3.2874 -7.2321 3.2439 34 1 2.1533 -9.5922 2.1855 35 1 1.1201 -9.0221 3.5181 36 1 3.1933 -9.8708 6.3516 37 1 1.4837 -9.8473 5.6600 38 1 4.5963 -12.4126 3.7177 39 1 3.9239 -12.9006 5.3643 40 1 1.5724 -12.8677 4.4136 41 1 2.2449 -12.3797 2.7670 42 1 3.0431 -3.4500 0.8097 43 1 2.6139 -3.9806 -0.8469 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576211348.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:21 Heat of formation + Delta-G solvation = 11.759811 kcal Electronic energy + Delta-G solvation = -20971.378164 eV Core-core repulsion = 17824.676950 eV Total energy + Delta-G solvation = -3146.701214 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.90766 -38.75948 -37.15871 -34.78045 -33.59874 -32.63439 -31.73620 -28.13804 -27.53841 -25.98458 -23.74918 -22.78631 -21.55430 -20.95318 -19.68764 -19.48853 -19.00400 -17.78416 -16.67463 -16.05057 -15.58918 -15.35136 -15.01093 -14.69542 -14.63059 -14.41409 -13.92000 -13.63832 -13.21891 -12.60606 -12.29000 -11.93293 -11.80759 -11.74417 -11.64720 -11.07853 -10.95689 -10.88704 -10.58980 -10.41200 -10.34105 -10.29264 -10.25334 -9.91719 -9.75729 -9.48066 -9.19535 -9.06004 -8.78242 -8.42357 -8.33441 -5.98869 -4.02571 2.81666 3.29556 3.32150 3.37022 3.37453 3.39387 3.49013 3.93510 4.37332 4.44455 4.48694 4.55846 4.91044 5.12407 5.14997 5.26054 5.33070 5.33167 5.43079 5.52557 5.55659 5.62475 5.63026 5.73914 5.77440 5.89374 5.90005 6.37906 6.42437 6.53384 6.63287 6.72135 6.79727 6.94489 7.01816 7.12825 7.32087 7.43068 7.74784 7.91513 8.05319 8.27791 8.44774 8.87575 8.99324 9.61385 11.10160 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.045656 B = 0.002617 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.135103 B =10695.143738 C =10881.067719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.515 4.515 8 H 0.054 0.946 9 C 0.052 3.948 10 H 0.032 0.968 11 C -0.100 4.100 12 C -0.135 4.135 13 C 0.156 3.844 14 H 0.079 0.921 15 N -0.733 5.733 16 C 0.700 3.300 17 O -0.595 6.595 18 N -0.751 5.751 19 C 0.172 3.828 20 C -0.114 4.114 21 H 0.111 0.889 22 C -0.123 4.123 23 C -0.225 4.225 24 C -0.130 4.130 25 C -0.129 4.129 26 C -0.121 4.121 27 H 0.260 0.740 28 H 0.068 0.932 29 H 0.045 0.955 30 H 0.055 0.945 31 H 0.048 0.952 32 H 0.393 0.607 33 H 0.394 0.606 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.060 0.940 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.253 -20.183 10.145 23.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.553 4.553 8 H 0.073 0.927 9 C 0.033 3.967 10 H 0.050 0.950 11 C -0.138 4.138 12 C -0.174 4.174 13 C 0.052 3.948 14 H 0.097 0.903 15 N -0.387 5.387 16 C 0.400 3.600 17 O -0.474 6.474 18 N -0.408 5.408 19 C 0.048 3.952 20 C -0.132 4.132 21 H 0.129 0.871 22 C -0.159 4.159 23 C -0.226 4.226 24 C -0.167 4.167 25 C -0.166 4.166 26 C -0.159 4.159 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.226 0.774 33 H 0.228 0.772 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.116 0.884 42 H 0.079 0.921 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.161 -20.510 9.612 23.474 hybrid contribution 1.214 1.293 0.540 1.854 sum 7.375 -19.217 10.152 22.951 Atomic orbital electron populations 1.69949 1.05864 1.26535 1.50304 1.24977 0.94833 0.98982 0.95122 0.86704 0.79610 0.83385 0.78522 1.20329 1.21374 1.20377 1.21060 0.92692 0.90474 1.51094 0.92736 1.19549 0.92010 0.90977 0.94176 0.94957 1.22300 1.01614 0.90447 0.99454 1.22669 0.97188 0.98699 0.98846 1.21733 0.91710 0.91441 0.89902 0.90332 1.45539 1.33339 1.11535 1.48297 1.16021 0.82720 0.81389 0.79844 1.90900 1.29137 1.71798 1.55527 1.45098 1.33457 1.13997 1.48238 1.20596 0.96720 0.80753 0.97174 1.22244 1.00196 0.93769 0.96991 0.87099 1.22892 1.01712 0.98815 0.92506 1.21468 1.08345 0.86486 1.06311 1.22677 0.94790 0.96655 1.02564 1.22669 0.96459 0.96909 1.00571 1.22762 0.98743 0.95459 0.98921 0.93010 0.91307 0.93592 0.92648 0.93284 0.77375 0.77213 0.91493 0.91456 0.88412 0.88202 0.88572 0.88572 0.88472 0.88359 0.92125 0.92887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.39 12.02 55.43 0.67 -24.72 16 2 C 0.06 1.72 5.33 -17.82 -0.10 1.63 16 3 Si 0.89 21.06 29.54 -169.99 -5.02 16.03 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 7 C -0.51 -13.84 8.54 -34.44 -0.29 -14.14 16 8 H 0.05 1.43 7.78 -52.49 -0.41 1.02 16 9 C 0.05 1.26 2.83 -89.76 -0.25 1.01 16 10 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 11 C -0.10 -2.33 5.56 -25.07 -0.14 -2.47 16 12 C -0.14 -2.72 6.59 -25.61 -0.17 -2.89 16 13 C 0.16 2.93 3.23 -66.81 -0.22 2.71 16 14 H 0.08 1.57 7.60 -51.93 -0.39 1.17 16 15 N -0.73 -11.43 5.00 -57.58 -0.29 -11.72 16 16 C 0.70 11.34 8.56 -86.92 -0.74 10.60 16 17 O -0.60 -12.16 16.02 5.29 0.08 -12.07 16 18 N -0.75 -8.81 5.56 -65.23 -0.36 -9.17 16 19 C 0.17 1.87 5.96 -4.05 -0.02 1.85 16 20 C -0.11 -0.93 5.84 -90.62 -0.53 -1.46 16 21 H 0.11 0.80 8.04 -51.93 -0.42 0.38 16 22 C -0.12 -0.92 10.18 -26.69 -0.27 -1.19 16 23 C -0.23 -1.81 5.40 -154.49 -0.83 -2.64 16 24 C -0.13 -0.86 10.53 -26.73 -0.28 -1.14 16 25 C -0.13 -0.93 10.53 -26.73 -0.28 -1.21 16 26 C -0.12 -2.40 5.94 -25.06 -0.15 -2.55 16 27 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 28 H 0.07 1.76 7.37 -51.93 -0.38 1.38 16 29 H 0.05 1.09 8.04 -51.93 -0.42 0.68 16 30 H 0.05 1.13 8.14 -51.92 -0.42 0.70 16 31 H 0.05 0.95 7.92 -51.93 -0.41 0.54 16 32 H 0.39 5.07 8.35 -40.82 -0.34 4.73 16 33 H 0.39 3.46 8.42 -40.82 -0.34 3.12 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.81 7.87 -51.93 -0.41 0.40 16 36 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.10 0.76 8.03 -51.93 -0.42 0.34 16 38 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.06 1.15 7.63 -51.93 -0.40 0.75 16 43 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 353.12 15.07 5.32 5.32 Total: -1.00 -31.29 353.12 -11.16 -42.45 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -7.28 Total: 5.79 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: -4.28 Total: -11.91 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: 0.02 Total: -45.61 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: 0.08 Total: -12.07 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.29 -11.16 -42.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576211348.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.212 kcal (2) G-P(sol) polarization free energy of solvation -31.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds