Wall clock time and date at job start Tue Mar 31 2020 00:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86808 * 119.99868 * 2 1 4 4 H 1.48503 * 109.46978 * 240.00206 * 3 2 1 5 5 H 1.48498 * 109.46772 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46800 * 120.00318 * 3 2 1 7 7 C 1.37874 * 120.00390 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00140 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99849 * 359.97438 * 7 2 1 10 10 H 1.08997 * 110.67128 * 61.78297 * 9 7 2 11 11 C 1.54888 * 110.75211 * 298.54532 * 9 7 2 12 12 C 1.54264 * 104.19525 * 203.74491 * 11 9 7 13 13 C 1.53878 * 106.59983 * 23.60953 * 12 11 9 14 14 H 1.08999 * 110.03195 * 240.67151 * 13 12 11 15 15 N 1.46495 * 110.03257 * 119.28775 * 13 12 11 16 16 C 1.34775 * 120.00341 * 86.45059 * 15 13 12 17 17 O 1.21583 * 119.99759 * 0.02562 * 16 15 13 18 18 N 1.34780 * 120.00358 * 179.97438 * 16 15 13 19 19 C 1.46495 * 120.00345 * 180.02562 * 18 16 15 20 20 C 1.52996 * 109.47343 * 180.02562 * 19 18 16 21 21 H 1.09002 * 115.54951 * 330.58548 * 20 19 18 22 22 C 1.53002 * 117.49888 * 116.25574 * 20 19 18 23 23 C 1.52993 * 117.49874 * 184.91438 * 20 19 18 24 24 C 1.52992 * 138.58906 * 121.60000 * 23 20 19 25 25 C 1.52989 * 138.58986 * 23.37721 * 23 20 19 26 26 C 1.54264 * 106.59642 * 0.02562 * 13 12 11 27 27 H 0.97000 * 120.00108 * 359.97438 * 1 2 3 28 28 H 1.08993 * 110.48718 * 85.06721 * 11 9 7 29 29 H 1.09001 * 110.60290 * 322.47631 * 11 9 7 30 30 H 1.09008 * 110.03145 * 264.32844 * 12 11 9 31 31 H 1.08995 * 110.03743 * 142.89784 * 12 11 9 32 32 H 0.97001 * 120.00015 * 266.45709 * 15 13 12 33 33 H 0.96999 * 119.99445 * 0.02562 * 18 16 15 34 34 H 1.09002 * 109.47043 * 59.99999 * 19 18 16 35 35 H 1.09004 * 109.47109 * 300.00552 * 19 18 16 36 36 H 1.09000 * 117.49996 * 215.00804 * 22 20 19 37 37 H 1.09006 * 117.49663 * 0.02562 * 22 20 19 38 38 H 1.08996 * 117.49738 * 336.59046 * 24 23 20 39 39 H 1.09004 * 117.50094 * 121.61400 * 24 23 20 40 40 H 1.09003 * 117.50442 * 238.38012 * 25 23 20 41 41 H 1.09001 * 117.50183 * 23.40944 * 25 23 20 42 42 H 1.09000 * 110.48701 * 95.06878 * 26 13 12 43 43 H 1.09000 * 110.48496 * 217.71354 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6408 -2.5911 -0.8989 11 6 0.3778 -2.6287 1.2721 12 6 0.1833 -4.1493 1.4443 13 6 1.3583 -4.8278 0.7184 14 1 0.9843 -5.4664 -0.0818 15 7 2.1437 -5.6208 1.6673 16 6 1.7897 -6.8928 1.9377 17 8 0.8188 -7.3823 1.3937 18 7 2.5126 -7.6226 2.8103 19 6 2.1282 -9.0054 3.1037 20 6 3.1059 -9.6023 4.1179 21 1 4.1188 -9.2009 4.0868 22 6 2.5477 -10.0064 5.4840 23 6 2.9429 -11.0824 4.4695 24 6 3.7681 -12.3699 4.4250 25 6 2.3497 -12.3500 3.8516 26 6 2.2262 -3.6957 0.1311 27 1 -0.4850 0.8400 0.0004 28 1 -0.5832 -2.1352 1.1272 29 1 0.8942 -2.2100 2.1359 30 1 -0.7610 -4.4581 0.9957 31 1 0.1974 -4.4102 2.5024 32 1 2.9185 -5.2304 2.1011 33 1 3.2874 -7.2321 3.2439 34 1 2.1533 -9.5922 2.1855 35 1 1.1201 -9.0221 3.5181 36 1 3.1933 -9.8708 6.3516 37 1 1.4837 -9.8473 5.6600 38 1 4.5963 -12.4126 3.7177 39 1 3.9239 -12.9006 5.3643 40 1 1.5724 -12.8677 4.4136 41 1 2.2449 -12.3797 2.7670 42 1 3.0431 -3.4500 0.8097 43 1 2.6139 -3.9806 -0.8469 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576211348.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:20 Heat of formation + Delta-G solvation = -6.747456 kcal Electronic energy + Delta-G solvation = -20972.180700 eV Core-core repulsion = 17824.676950 eV Total energy + Delta-G solvation = -3147.503750 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.18188 -39.50742 -38.72067 -35.80821 -35.26878 -33.88374 -33.07740 -29.96120 -28.98762 -27.23546 -25.63320 -23.30625 -22.35780 -22.12968 -21.30634 -20.88812 -20.13547 -18.90658 -18.48448 -17.34092 -16.84912 -16.54935 -16.08341 -15.92604 -15.83599 -15.58996 -15.30872 -14.74948 -14.43732 -14.16436 -14.00028 -13.60977 -13.00249 -12.75324 -12.59429 -12.48377 -12.42399 -12.35560 -12.29875 -12.09552 -11.66077 -11.39682 -11.32426 -11.05914 -10.98899 -10.85616 -10.80600 -10.78909 -10.43752 -10.28135 -9.69043 -8.07554 -6.18212 1.45189 1.46236 1.53649 1.70593 2.18220 2.46716 2.68809 2.76405 3.23082 3.27449 3.48392 3.79299 3.91475 3.96202 4.06819 4.21054 4.23400 4.44481 4.53169 4.70805 4.74029 4.77427 4.79969 4.80559 4.88304 4.92858 4.95634 5.01952 5.05522 5.09479 5.18402 5.19198 5.27619 5.32421 5.43639 5.53118 5.68489 5.72338 5.95340 6.02124 6.08361 6.39461 6.92309 7.16026 7.49508 7.62946 9.00710 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.045656 B = 0.002617 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.135103 B =10695.143738 C =10881.067719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.010 3.990 3 Si 0.954 3.046 4 H -0.271 1.271 5 H -0.290 1.290 6 H -0.268 1.268 7 C -0.529 4.529 8 H 0.060 0.940 9 C 0.040 3.960 10 H -0.001 1.001 11 C -0.089 4.089 12 C -0.124 4.124 13 C 0.170 3.830 14 H 0.067 0.933 15 N -0.723 5.723 16 C 0.698 3.302 17 O -0.640 6.640 18 N -0.730 5.730 19 C 0.175 3.825 20 C -0.113 4.113 21 H 0.127 0.873 22 C -0.118 4.118 23 C -0.243 4.243 24 C -0.119 4.119 25 C -0.138 4.138 26 C -0.105 4.105 27 H 0.259 0.741 28 H 0.037 0.963 29 H 0.038 0.962 30 H 0.048 0.952 31 H 0.060 0.940 32 H 0.409 0.591 33 H 0.413 0.587 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.113 0.887 37 H 0.095 0.905 38 H 0.102 0.898 39 H 0.108 0.892 40 H 0.103 0.897 41 H 0.094 0.906 42 H 0.076 0.924 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.580 -20.923 11.518 25.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.189 4.189 3 Si 0.780 3.220 4 H -0.196 1.196 5 H -0.215 1.215 6 H -0.193 1.193 7 C -0.567 4.567 8 H 0.078 0.922 9 C 0.021 3.979 10 H 0.018 0.982 11 C -0.127 4.127 12 C -0.163 4.163 13 C 0.064 3.936 14 H 0.085 0.915 15 N -0.378 5.378 16 C 0.398 3.602 17 O -0.522 6.522 18 N -0.387 5.387 19 C 0.050 3.950 20 C -0.131 4.131 21 H 0.145 0.855 22 C -0.154 4.154 23 C -0.244 4.244 24 C -0.156 4.156 25 C -0.175 4.175 26 C -0.143 4.143 27 H 0.068 0.932 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.246 0.754 33 H 0.249 0.751 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.131 0.869 37 H 0.113 0.887 38 H 0.120 0.880 39 H 0.127 0.873 40 H 0.121 0.879 41 H 0.112 0.888 42 H 0.094 0.906 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.556 -21.263 11.027 25.435 hybrid contribution 0.461 1.472 0.103 1.546 sum 9.018 -19.791 11.130 24.432 Atomic orbital electron populations 1.70098 1.07369 1.27169 1.51397 1.25795 0.95614 1.02539 0.94955 0.85670 0.78323 0.79069 0.78922 1.19637 1.21533 1.19340 1.21459 0.93160 0.91587 1.50468 0.92169 1.19537 0.92847 0.92362 0.93154 0.98233 1.22070 0.99617 0.92384 0.98629 1.22543 0.97738 0.96363 0.99699 1.21323 0.91183 0.91070 0.89992 0.91464 1.45208 1.33498 1.11275 1.47820 1.16169 0.82506 0.81446 0.80100 1.90878 1.31274 1.72685 1.57326 1.44917 1.33159 1.13949 1.46713 1.20584 0.97025 0.80007 0.97348 1.22135 1.00131 0.94138 0.96694 0.85532 1.22942 1.01774 0.98146 0.92569 1.21666 1.09550 0.86671 1.06517 1.22772 0.94384 0.95310 1.03095 1.22752 0.97421 0.96837 1.00509 1.22560 0.98081 0.93692 1.00015 0.93222 0.94436 0.94289 0.93339 0.92161 0.75410 0.75073 0.92840 0.92852 0.86884 0.88671 0.88016 0.87338 0.87878 0.88785 0.90556 0.91990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.75 12.02 21.45 0.26 -53.49 16 2 C 0.01 0.53 5.33 84.66 0.45 0.98 16 3 Si 0.95 43.02 29.54 68.60 2.03 45.04 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 6 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 7 C -0.53 -28.36 8.54 25.60 0.22 -28.14 16 8 H 0.06 3.09 7.78 -2.91 -0.02 3.07 16 9 C 0.04 1.97 2.83 -10.24 -0.03 1.94 16 10 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 11 C -0.09 -4.20 5.56 31.67 0.18 -4.02 16 12 C -0.12 -4.99 6.59 31.32 0.21 -4.79 16 13 C 0.17 6.20 3.23 45.72 0.15 6.35 16 14 H 0.07 2.66 7.60 -2.39 -0.02 2.64 16 15 N -0.72 -21.10 5.00 -454.36 -2.27 -23.37 16 16 C 0.70 21.62 8.56 179.05 1.53 23.15 16 17 O -0.64 -25.94 16.02 -3.98 -0.06 -26.01 16 18 N -0.73 -15.71 5.56 -478.55 -2.66 -18.37 16 19 C 0.17 3.60 5.96 86.38 0.51 4.12 16 20 C -0.11 -1.62 5.84 -10.80 -0.06 -1.68 16 21 H 0.13 1.43 8.04 -2.39 -0.02 1.41 16 22 C -0.12 -1.53 10.18 30.62 0.31 -1.21 16 23 C -0.24 -3.45 5.40 -52.17 -0.28 -3.73 16 24 C -0.12 -1.32 10.53 30.59 0.32 -1.00 16 25 C -0.14 -1.83 10.53 30.59 0.32 -1.51 16 26 C -0.11 -4.07 5.94 31.68 0.19 -3.88 16 27 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 28 H 0.04 1.98 7.37 -2.39 -0.02 1.96 16 29 H 0.04 1.86 8.04 -2.39 -0.02 1.84 16 30 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 31 H 0.06 2.27 7.92 -2.39 -0.02 2.25 16 32 H 0.41 9.32 8.35 -92.71 -0.77 8.55 16 33 H 0.41 5.99 8.42 -92.71 -0.78 5.21 16 34 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.05 1.26 7.87 -2.38 -0.02 1.25 16 36 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.09 1.32 8.03 -2.38 -0.02 1.30 16 38 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.11 0.93 8.14 -2.38 -0.02 0.91 16 40 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.08 2.71 7.63 -2.39 -0.02 2.69 16 43 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -67.95 353.12 0.76 -67.20 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: -0.55 Total: 22.42 kcal Atomic # 6 Polarization: -17.44 SS G_CDS: 4.02 Total: -13.42 kcal Atomic # 7 Polarization: -90.56 SS G_CDS: -4.67 Total: -95.23 kcal Atomic # 8 Polarization: -25.94 SS G_CDS: -0.06 Total: -26.01 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Total: -67.95 0.76 -67.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576211348.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.449 kcal (2) G-P(sol) polarization free energy of solvation -67.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds