Wall clock time and date at job start Mon Mar 30 2020 23:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86801 * 120.00225 * 2 1 4 4 H 1.48505 * 109.47023 * 266.06159 * 3 2 1 5 5 H 1.48499 * 109.46955 * 26.06148 * 3 2 1 6 6 H 1.48497 * 109.47121 * 146.06140 * 3 2 1 7 7 C 1.40046 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00491 * 350.10763 * 7 2 1 9 9 C 1.46383 * 120.00140 * 170.10296 * 7 2 1 10 10 O 1.21682 * 119.99698 * 351.51388 * 9 7 2 11 11 N 1.34776 * 119.99801 * 171.77866 * 9 7 2 12 12 C 1.47076 * 120.88374 * 4.75486 * 11 9 7 13 13 C 1.53697 * 108.27650 * 128.74910 * 12 11 9 14 14 N 1.46903 * 109.25487 * 54.08280 * 13 12 11 15 15 C 1.46896 * 110.99723 * 172.60433 * 14 13 12 16 16 C 1.50704 * 109.47491 * 314.30199 * 15 14 13 17 17 C 1.29442 * 117.96066 * 95.00292 * 16 15 14 18 18 C 1.50069 * 124.07303 * 180.44815 * 17 16 15 19 19 C 1.53019 * 110.14917 * 342.86527 * 18 17 16 20 20 C 1.53393 * 108.43533 * 49.43622 * 19 18 17 21 21 C 1.50061 * 117.96039 * 274.73389 * 16 15 14 22 22 C 1.46900 * 111.26720 * 296.75539 * 14 13 12 23 23 C 1.47079 * 120.87900 * 185.02663 * 11 9 7 24 24 H 0.97001 * 119.99919 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.62586 * 248.52111 * 12 11 9 26 26 H 1.09002 * 109.62959 * 9.09915 * 12 11 9 27 27 H 1.09001 * 109.64846 * 294.08040 * 13 12 11 28 28 H 1.09007 * 109.42111 * 173.94908 * 13 12 11 29 29 H 1.09004 * 109.47237 * 74.30202 * 15 14 13 30 30 H 1.09003 * 109.47229 * 194.30307 * 15 14 13 31 31 H 1.08008 * 117.96394 * 0.42115 * 17 16 15 32 32 H 1.09005 * 109.35554 * 103.07683 * 18 17 16 33 33 H 1.08999 * 109.35819 * 222.65349 * 18 17 16 34 34 H 1.08999 * 109.64320 * 169.11800 * 19 18 17 35 35 H 1.09000 * 109.63874 * 289.75451 * 19 18 17 36 36 H 1.09005 * 109.64590 * 52.25057 * 20 19 18 37 37 H 1.09000 * 109.64214 * 172.88189 * 20 19 18 38 38 H 1.09001 * 109.36236 * 283.10046 * 21 16 15 39 39 H 1.09003 * 109.36188 * 42.68469 * 21 16 15 40 40 H 1.08990 * 109.49026 * 303.14227 * 22 14 13 41 41 H 1.09004 * 109.50921 * 183.07943 * 22 14 13 42 42 H 1.09007 * 109.62946 * 350.90480 * 23 11 9 43 43 H 1.08997 * 109.62740 * 111.48047 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.5716 1.9983 -1.3968 5 1 1.3991 2.6752 0.6151 6 1 3.4942 1.4656 0.7817 7 6 2.0069 -1.2129 -0.0005 8 1 1.4790 -2.1413 0.1597 9 6 3.4544 -1.2223 -0.2184 10 8 4.0262 -0.2010 -0.5513 11 7 4.1530 -2.3633 -0.0555 12 6 3.4691 -3.6317 0.2389 13 6 3.9641 -4.6895 -0.7602 14 7 5.4311 -4.7502 -0.7143 15 6 5.9373 -5.8671 -1.5231 16 6 5.1294 -7.1054 -1.2313 17 6 4.1350 -7.3796 -2.0132 18 6 3.2357 -8.5690 -1.8442 19 6 3.8935 -9.6009 -0.9255 20 6 4.3843 -8.8825 0.3378 21 6 5.5318 -7.9471 -0.0559 22 6 6.0307 -3.4783 -1.1392 23 6 5.6199 -2.3720 -0.1617 24 1 -0.4850 0.8401 -0.0004 25 1 3.7031 -3.9462 1.2560 26 1 2.3923 -3.5005 0.1318 27 1 3.6425 -4.4218 -1.7667 28 1 3.5511 -5.6622 -0.4926 29 1 5.8511 -5.6181 -2.5808 30 1 6.9833 -6.0494 -1.2768 31 1 3.9401 -6.7104 -2.8383 32 1 2.2898 -8.2477 -1.4081 33 1 3.0470 -9.0206 -2.8182 34 1 3.1659 -10.3654 -0.6530 35 1 4.7388 -10.0609 -1.4373 36 1 3.5681 -8.3046 0.7713 37 1 4.7423 -9.6157 1.0605 38 1 6.4099 -8.5374 -0.3178 39 1 5.7728 -7.2993 0.7869 40 1 5.6803 -3.2276 -2.1404 41 1 7.1166 -3.5722 -1.1468 42 1 5.9658 -1.4076 -0.5337 43 1 6.0567 -2.5679 0.8176 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581378038.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:59:53 Heat of formation + Delta-G solvation = -30.931575 kcal Electronic energy + Delta-G solvation = -22372.648736 eV Core-core repulsion = 19224.096284 eV Total energy + Delta-G solvation = -3148.552452 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.62764 -38.38584 -36.72804 -33.95842 -32.82921 -31.59932 -30.83395 -30.44619 -27.70431 -26.25445 -24.07088 -23.47503 -22.88156 -21.48556 -20.67637 -18.81193 -17.64210 -16.79848 -16.13591 -15.80447 -15.25943 -14.77382 -14.66763 -14.46589 -14.14492 -13.95244 -13.92000 -13.72012 -13.28093 -12.68874 -12.45645 -12.35395 -12.23204 -12.04224 -12.00309 -11.59951 -11.55756 -11.02155 -10.94658 -10.86279 -10.71389 -10.63793 -10.48897 -10.34575 -10.15568 -9.36451 -9.01246 -8.86894 -8.16411 -7.81955 -7.45943 -6.61432 -4.83038 2.12411 3.46623 3.51645 3.77482 4.08870 4.24612 4.33702 4.54253 4.59521 4.62178 4.79310 5.03998 5.14350 5.26065 5.30279 5.41365 5.45369 5.47607 5.47987 5.52483 5.58726 5.71229 5.75076 5.76407 5.82691 5.86500 5.88274 5.97275 6.05436 6.09662 6.17334 6.21667 6.35935 6.42891 6.56666 6.61224 6.92166 7.06183 7.23576 7.29294 7.65414 7.90208 8.32975 8.73901 9.17006 10.06683 10.39121 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027735 B = 0.004277 C = 0.003903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.321302 B = 6545.489695 C = 7172.019386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.101 3.899 3 Si 0.969 3.031 4 H -0.281 1.281 5 H -0.324 1.324 6 H -0.261 1.261 7 C -0.533 4.533 8 H 0.090 0.910 9 C 0.552 3.448 10 O -0.619 6.619 11 N -0.634 5.634 12 C 0.127 3.873 13 C 0.038 3.962 14 N -0.530 5.530 15 C 0.085 3.915 16 C -0.111 4.111 17 C -0.155 4.155 18 C -0.088 4.088 19 C -0.120 4.120 20 C -0.120 4.120 21 C -0.078 4.078 22 C 0.044 3.956 23 C 0.125 3.875 24 H 0.282 0.718 25 H 0.054 0.946 26 H 0.098 0.902 27 H 0.033 0.967 28 H 0.084 0.916 29 H 0.034 0.966 30 H 0.076 0.924 31 H 0.099 0.901 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.034 0.966 41 H 0.075 0.925 42 H 0.087 0.913 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.740 -18.180 -1.483 20.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.117 4.117 3 Si 0.802 3.198 4 H -0.207 1.207 5 H -0.255 1.255 6 H -0.186 1.186 7 C -0.568 4.568 8 H 0.108 0.892 9 C 0.362 3.638 10 O -0.512 6.512 11 N -0.369 5.369 12 C 0.003 3.997 13 C -0.090 4.090 14 N -0.255 5.255 15 C -0.042 4.042 16 C -0.111 4.111 17 C -0.174 4.174 18 C -0.125 4.125 19 C -0.157 4.157 20 C -0.158 4.158 21 C -0.115 4.115 22 C -0.084 4.084 23 C 0.000 4.000 24 H 0.092 0.908 25 H 0.072 0.928 26 H 0.116 0.884 27 H 0.051 0.949 28 H 0.102 0.898 29 H 0.052 0.948 30 H 0.094 0.906 31 H 0.118 0.882 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.052 0.948 41 H 0.093 0.907 42 H 0.106 0.894 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.977 -17.699 -1.172 19.880 hybrid contribution 0.026 0.721 -1.001 1.234 sum 9.004 -16.978 -2.173 19.340 Atomic orbital electron populations 1.69569 1.08001 1.30012 1.38166 1.25788 0.94721 1.02185 0.88984 0.85184 0.77945 0.77163 0.79556 1.20707 1.25546 1.18626 1.20799 0.89417 0.95797 1.50817 0.89230 1.18320 0.88258 0.80642 0.76555 1.90179 1.71941 1.32343 1.56693 1.47714 1.04713 1.08591 1.75838 1.21682 0.98542 0.82796 0.96713 1.22758 0.87220 1.00127 0.98915 1.62070 1.07142 1.02842 1.53438 1.21254 0.98650 0.89206 0.95130 1.20728 0.97150 0.96211 0.97022 1.21970 0.96785 0.98703 0.99979 1.20414 0.98173 0.94145 0.99794 1.21602 1.00237 0.97519 0.96366 1.21639 0.98566 0.98378 0.97197 1.20365 0.97848 0.96865 0.96425 1.22513 0.98777 0.89508 0.97635 1.21297 0.82956 0.97918 0.97800 0.90827 0.92765 0.88406 0.94913 0.89763 0.94813 0.90556 0.88250 0.90768 0.91384 0.91941 0.92008 0.91487 0.91893 0.91345 0.90263 0.94777 0.90706 0.89430 0.92732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.66 13.92 55.55 0.77 -22.89 16 2 C 0.10 2.92 5.52 -17.37 -0.10 2.82 16 3 Si 0.97 25.92 25.93 -169.99 -4.41 21.51 16 4 H -0.28 -7.70 7.11 56.52 0.40 -7.30 16 5 H -0.32 -8.20 7.11 56.52 0.40 -7.79 16 6 H -0.26 -7.34 6.49 56.52 0.37 -6.97 16 7 C -0.53 -15.16 9.41 -35.63 -0.34 -15.49 16 8 H 0.09 2.51 5.93 -52.48 -0.31 2.20 16 9 C 0.55 15.00 7.40 -12.98 -0.10 14.90 16 10 O -0.62 -18.20 11.57 5.20 0.06 -18.14 16 11 N -0.63 -14.13 3.00 -173.85 -0.52 -14.65 16 12 C 0.13 2.40 6.50 -3.37 -0.02 2.38 16 13 C 0.04 0.61 4.84 -3.46 -0.02 0.60 16 14 N -0.53 -7.77 4.77 -235.46 -1.12 -8.90 16 15 C 0.08 1.03 5.31 -4.98 -0.03 1.00 16 16 C -0.11 -1.23 3.98 -100.94 -0.40 -1.63 16 17 C -0.16 -1.69 7.70 -35.90 -0.28 -1.97 16 18 C -0.09 -0.81 6.11 -28.18 -0.17 -0.99 16 19 C -0.12 -0.99 6.01 -26.52 -0.16 -1.15 16 20 C -0.12 -1.06 6.02 -26.43 -0.16 -1.22 16 21 C -0.08 -0.76 5.80 -28.10 -0.16 -0.92 16 22 C 0.04 0.69 5.58 -3.70 -0.02 0.67 16 23 C 0.12 2.36 6.61 -3.61 -0.02 2.33 16 24 H 0.28 7.42 8.29 -40.82 -0.34 7.08 16 25 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 26 H 0.10 1.99 5.45 -51.93 -0.28 1.71 16 27 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.08 1.22 5.74 -51.93 -0.30 0.92 16 29 H 0.03 0.42 7.73 -51.93 -0.40 0.02 16 30 H 0.08 0.84 8.11 -51.93 -0.42 0.42 16 31 H 0.10 1.16 7.74 -52.48 -0.41 0.75 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.50 8.12 -51.93 -0.42 0.08 16 36 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.98 8.11 -51.93 -0.42 0.56 16 42 H 0.09 1.79 7.04 -51.93 -0.37 1.42 16 43 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 328.49 15.07 4.95 4.95 Total: -1.00 -31.55 328.49 -9.39 -40.94 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: -7.15 Total: -4.17 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: -1.97 Total: 1.35 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: -0.87 Total: -46.44 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: 0.06 Total: -18.14 kcal Atomic # 14 Polarization: 25.92 SS G_CDS: -4.41 Total: 21.51 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.55 -9.39 -40.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581378038.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.006 kcal (2) G-P(sol) polarization free energy of solvation -31.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds