Wall clock time and date at job start Mon Mar 30 2020 23:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86801 * 120.00225 * 2 1 4 4 H 1.48505 * 109.47023 * 266.06159 * 3 2 1 5 5 H 1.48499 * 109.46955 * 26.06148 * 3 2 1 6 6 H 1.48497 * 109.47121 * 146.06140 * 3 2 1 7 7 C 1.40046 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00491 * 350.10763 * 7 2 1 9 9 C 1.46383 * 120.00140 * 170.10296 * 7 2 1 10 10 O 1.21682 * 119.99698 * 351.51388 * 9 7 2 11 11 N 1.34776 * 119.99801 * 171.77866 * 9 7 2 12 12 C 1.47076 * 120.88374 * 4.75486 * 11 9 7 13 13 C 1.53697 * 108.27650 * 128.74910 * 12 11 9 14 14 N 1.46903 * 109.25487 * 54.08280 * 13 12 11 15 15 C 1.46896 * 110.99723 * 172.60433 * 14 13 12 16 16 C 1.50704 * 109.47491 * 314.30199 * 15 14 13 17 17 C 1.29442 * 117.96066 * 95.00292 * 16 15 14 18 18 C 1.50069 * 124.07303 * 180.44815 * 17 16 15 19 19 C 1.53019 * 110.14917 * 342.86527 * 18 17 16 20 20 C 1.53393 * 108.43533 * 49.43622 * 19 18 17 21 21 C 1.50061 * 117.96039 * 274.73389 * 16 15 14 22 22 C 1.46900 * 111.26720 * 296.75539 * 14 13 12 23 23 C 1.47079 * 120.87900 * 185.02663 * 11 9 7 24 24 H 0.97001 * 119.99919 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.62586 * 248.52111 * 12 11 9 26 26 H 1.09002 * 109.62959 * 9.09915 * 12 11 9 27 27 H 1.09001 * 109.64846 * 294.08040 * 13 12 11 28 28 H 1.09007 * 109.42111 * 173.94908 * 13 12 11 29 29 H 1.09004 * 109.47237 * 74.30202 * 15 14 13 30 30 H 1.09003 * 109.47229 * 194.30307 * 15 14 13 31 31 H 1.08008 * 117.96394 * 0.42115 * 17 16 15 32 32 H 1.09005 * 109.35554 * 103.07683 * 18 17 16 33 33 H 1.08999 * 109.35819 * 222.65349 * 18 17 16 34 34 H 1.08999 * 109.64320 * 169.11800 * 19 18 17 35 35 H 1.09000 * 109.63874 * 289.75451 * 19 18 17 36 36 H 1.09005 * 109.64590 * 52.25057 * 20 19 18 37 37 H 1.09000 * 109.64214 * 172.88189 * 20 19 18 38 38 H 1.09001 * 109.36236 * 283.10046 * 21 16 15 39 39 H 1.09003 * 109.36188 * 42.68469 * 21 16 15 40 40 H 1.08990 * 109.49026 * 303.14227 * 22 14 13 41 41 H 1.09004 * 109.50921 * 183.07943 * 22 14 13 42 42 H 1.09007 * 109.62946 * 350.90480 * 23 11 9 43 43 H 1.08997 * 109.62740 * 111.48047 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.5716 1.9983 -1.3968 5 1 1.3991 2.6752 0.6151 6 1 3.4942 1.4656 0.7817 7 6 2.0069 -1.2129 -0.0005 8 1 1.4790 -2.1413 0.1597 9 6 3.4544 -1.2223 -0.2184 10 8 4.0262 -0.2010 -0.5513 11 7 4.1530 -2.3633 -0.0555 12 6 3.4691 -3.6317 0.2389 13 6 3.9641 -4.6895 -0.7602 14 7 5.4311 -4.7502 -0.7143 15 6 5.9373 -5.8671 -1.5231 16 6 5.1294 -7.1054 -1.2313 17 6 4.1350 -7.3796 -2.0132 18 6 3.2357 -8.5690 -1.8442 19 6 3.8935 -9.6009 -0.9255 20 6 4.3843 -8.8825 0.3378 21 6 5.5318 -7.9471 -0.0559 22 6 6.0307 -3.4783 -1.1392 23 6 5.6199 -2.3720 -0.1617 24 1 -0.4850 0.8401 -0.0004 25 1 3.7031 -3.9462 1.2560 26 1 2.3923 -3.5005 0.1318 27 1 3.6425 -4.4218 -1.7667 28 1 3.5511 -5.6622 -0.4926 29 1 5.8511 -5.6181 -2.5808 30 1 6.9833 -6.0494 -1.2768 31 1 3.9401 -6.7104 -2.8383 32 1 2.2898 -8.2477 -1.4081 33 1 3.0470 -9.0206 -2.8182 34 1 3.1659 -10.3654 -0.6530 35 1 4.7388 -10.0609 -1.4373 36 1 3.5681 -8.3046 0.7713 37 1 4.7423 -9.6157 1.0605 38 1 6.4099 -8.5374 -0.3178 39 1 5.7728 -7.2993 0.7869 40 1 5.6803 -3.2276 -2.1404 41 1 7.1166 -3.5722 -1.1468 42 1 5.9658 -1.4076 -0.5337 43 1 6.0567 -2.5679 0.8176 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581378038.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:59:53 Heat of formation + Delta-G solvation = -51.096623 kcal Electronic energy + Delta-G solvation = -22373.523158 eV Core-core repulsion = 19224.096284 eV Total energy + Delta-G solvation = -3149.426874 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.91237 -39.78255 -38.22893 -35.47611 -35.02482 -32.77274 -31.81195 -31.56420 -29.37127 -27.95593 -25.27999 -24.69170 -23.95238 -22.57673 -22.02829 -20.54836 -18.71794 -18.43693 -18.09170 -17.06019 -16.72212 -16.15299 -15.97919 -15.77006 -15.68062 -15.52153 -14.88016 -14.60295 -14.53069 -14.42273 -13.99403 -13.84181 -13.60846 -13.31096 -13.11924 -12.97523 -12.76706 -12.70246 -12.59892 -12.24362 -12.18759 -12.04290 -11.59146 -11.41690 -11.24180 -11.23661 -10.97257 -9.97961 -9.77781 -9.46501 -9.14700 -8.81883 -7.03806 1.24966 1.30202 1.36264 1.60810 2.07040 2.33158 2.63551 3.02842 3.29876 3.70201 3.82232 3.95705 4.06707 4.12924 4.17652 4.27846 4.32663 4.38791 4.47120 4.54355 4.61009 4.67296 4.72565 4.75836 4.78636 4.80187 4.84732 4.91545 5.05784 5.10137 5.11097 5.15304 5.17732 5.26345 5.37839 5.52780 5.65433 5.73343 5.89906 5.98333 6.04545 6.16334 6.22736 6.60199 7.11561 7.95447 8.23306 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027735 B = 0.004277 C = 0.003903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.321302 B = 6545.489695 C = 7172.019386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.070 3.930 3 Si 1.013 2.987 4 H -0.293 1.293 5 H -0.299 1.299 6 H -0.284 1.284 7 C -0.552 4.552 8 H 0.085 0.915 9 C 0.547 3.453 10 O -0.647 6.647 11 N -0.635 5.635 12 C 0.125 3.875 13 C 0.054 3.946 14 N -0.528 5.528 15 C 0.086 3.914 16 C -0.117 4.117 17 C -0.158 4.158 18 C -0.090 4.090 19 C -0.116 4.116 20 C -0.120 4.120 21 C -0.075 4.075 22 C 0.054 3.946 23 C 0.120 3.880 24 H 0.292 0.708 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.014 0.986 28 H 0.103 0.897 29 H 0.030 0.970 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.055 0.945 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.018 0.982 41 H 0.109 0.891 42 H 0.069 0.931 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.913 -20.050 -1.205 22.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.146 4.146 3 Si 0.846 3.154 4 H -0.221 1.221 5 H -0.229 1.229 6 H -0.211 1.211 7 C -0.588 4.588 8 H 0.103 0.897 9 C 0.355 3.645 10 O -0.542 6.542 11 N -0.368 5.368 12 C 0.001 3.999 13 C -0.075 4.075 14 N -0.253 5.253 15 C -0.041 4.041 16 C -0.117 4.117 17 C -0.178 4.178 18 C -0.127 4.127 19 C -0.154 4.154 20 C -0.157 4.157 21 C -0.112 4.112 22 C -0.074 4.074 23 C -0.003 4.003 24 H 0.103 0.897 25 H 0.087 0.913 26 H 0.097 0.903 27 H 0.033 0.967 28 H 0.121 0.879 29 H 0.048 0.952 30 H 0.113 0.887 31 H 0.105 0.895 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.036 0.964 41 H 0.127 0.873 42 H 0.087 0.913 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 10.144 -19.608 -0.884 22.094 hybrid contribution -0.300 1.217 -1.097 1.666 sum 9.843 -18.391 -1.982 20.954 Atomic orbital electron populations 1.69562 1.08294 1.31157 1.38672 1.26259 0.95293 1.03844 0.89171 0.84558 0.76477 0.76050 0.78317 1.22079 1.22893 1.21129 1.21029 0.90529 0.95839 1.51434 0.89720 1.18275 0.88198 0.81618 0.76375 1.90149 1.72429 1.33777 1.57824 1.47717 1.06350 1.08312 1.74421 1.21800 0.97451 0.82177 0.98439 1.22553 0.88447 0.99651 0.96839 1.62071 1.05954 1.03133 1.54104 1.21328 0.99763 0.88508 0.94470 1.20799 0.97097 0.96060 0.97733 1.22085 0.96994 0.99139 0.99534 1.20457 0.97707 0.93873 1.00652 1.21592 1.00625 0.97337 0.95814 1.21643 0.97926 0.98449 0.97731 1.20368 0.98676 0.96817 0.95374 1.22408 1.00715 0.88822 0.95490 1.21496 0.80668 0.98511 0.99595 0.89730 0.91308 0.90297 0.96742 0.87937 0.95216 0.88688 0.89484 0.91070 0.90496 0.90775 0.91500 0.92596 0.90490 0.90001 0.91011 0.96418 0.87262 0.91299 0.91046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.39 13.92 21.84 0.30 -48.09 16 2 C 0.07 4.08 5.52 85.30 0.47 4.55 16 3 Si 1.01 53.79 25.93 68.60 1.78 55.57 16 4 H -0.29 -16.05 7.11 99.48 0.71 -15.34 16 5 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 6 H -0.28 -16.10 6.49 99.48 0.65 -15.45 16 7 C -0.55 -31.97 9.41 24.83 0.23 -31.74 16 8 H 0.08 4.87 5.93 -2.91 -0.02 4.86 16 9 C 0.55 30.15 7.40 86.36 0.64 30.79 16 10 O -0.65 -38.62 11.57 -4.29 -0.05 -38.67 16 11 N -0.64 -28.29 3.00 -822.15 -2.47 -30.76 16 12 C 0.12 4.67 6.50 86.50 0.56 5.23 16 13 C 0.05 1.66 4.84 86.54 0.42 2.08 16 14 N -0.53 -14.37 4.77 -898.87 -4.29 -18.66 16 15 C 0.09 1.88 5.31 85.56 0.45 2.33 16 16 C -0.12 -2.31 3.98 -15.10 -0.06 -2.37 16 17 C -0.16 -3.19 7.70 27.04 0.21 -2.98 16 18 C -0.09 -1.49 6.11 29.66 0.18 -1.31 16 19 C -0.12 -1.61 6.01 30.73 0.18 -1.43 16 20 C -0.12 -1.81 6.02 30.79 0.19 -1.62 16 21 C -0.08 -1.26 5.80 29.71 0.17 -1.09 16 22 C 0.05 1.60 5.58 86.38 0.48 2.08 16 23 C 0.12 4.45 6.61 86.35 0.57 5.02 16 24 H 0.29 15.24 8.29 -92.71 -0.77 14.47 16 25 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 26 H 0.08 3.27 5.45 -2.39 -0.01 3.25 16 27 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.10 2.81 5.74 -2.38 -0.01 2.80 16 29 H 0.03 0.69 7.73 -2.38 -0.02 0.67 16 30 H 0.09 1.76 8.11 -2.39 -0.02 1.75 16 31 H 0.09 1.96 7.74 -2.91 -0.02 1.93 16 32 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 33 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.07 0.88 8.12 -2.39 -0.02 0.86 16 36 H 0.06 0.97 8.12 -2.38 -0.02 0.95 16 37 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.11 2.51 8.11 -2.39 -0.02 2.49 16 42 H 0.07 2.81 7.04 -2.38 -0.02 2.79 16 43 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 Total: -1.00 -67.32 328.49 0.89 -66.43 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: 0.92 Total: 4.65 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: 4.70 Total: 9.54 kcal Atomic # 7 Polarization: -91.06 SS G_CDS: -6.45 Total: -97.51 kcal Atomic # 8 Polarization: -38.62 SS G_CDS: -0.05 Total: -38.67 kcal Atomic # 14 Polarization: 53.79 SS G_CDS: 1.78 Total: 55.57 kcal Total: -67.32 0.89 -66.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581378038.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.329 kcal (2) G-P(sol) polarization free energy of solvation -67.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds