Wall clock time and date at job start Tue Mar 31 2020 00:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 120.00047 * 2 1 4 4 H 1.48494 * 109.47052 * 239.99926 * 3 2 1 5 5 H 1.48500 * 109.47055 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47106 * 119.99366 * 3 2 1 7 7 C 1.37875 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99720 * 175.14336 * 7 2 1 9 9 C 1.50694 * 120.00314 * 355.42420 * 7 2 1 10 10 C 1.52992 * 115.55114 * 274.92789 * 9 7 2 11 11 N 1.46495 * 109.47269 * 294.81128 * 10 9 7 12 12 C 1.34782 * 120.00258 * 184.79147 * 11 10 9 13 13 O 1.21582 * 119.99693 * 0.02562 * 12 11 10 14 14 N 1.34776 * 120.00034 * 180.02562 * 12 11 10 15 15 C 1.46497 * 120.00194 * 180.02562 * 14 12 11 16 16 C 1.50699 * 109.47293 * 180.02562 * 15 14 12 17 17 C 1.29445 * 117.95787 * 94.73885 * 16 15 14 18 18 C 1.50073 * 124.06990 * 180.23654 * 17 16 15 19 19 C 1.53017 * 110.20381 * 343.31349 * 18 17 16 20 20 C 1.53397 * 108.43413 * 49.24828 * 19 18 17 21 21 C 1.50063 * 117.95978 * 274.99875 * 16 15 14 22 22 C 1.53003 * 117.49968 * 129.25534 * 9 7 2 23 23 C 1.53006 * 117.49603 * 60.59599 * 9 7 2 24 24 H 0.97001 * 119.99960 * 5.00103 * 1 2 3 25 25 H 1.09001 * 109.47339 * 54.81686 * 10 9 7 26 26 H 1.09007 * 109.46904 * 174.81223 * 10 9 7 27 27 H 0.96999 * 120.00105 * 4.80424 * 11 10 9 28 28 H 0.97004 * 120.00199 * 0.02562 * 14 12 11 29 29 H 1.09007 * 109.47147 * 300.00790 * 15 14 12 30 30 H 1.09003 * 109.46836 * 59.99708 * 15 14 12 31 31 H 1.07993 * 117.96832 * 0.46234 * 17 16 15 32 32 H 1.08996 * 109.47805 * 222.99398 * 18 17 16 33 33 H 1.09002 * 109.17611 * 103.44869 * 18 17 16 34 34 H 1.08995 * 109.64530 * 289.56855 * 19 18 17 35 35 H 1.09000 * 109.64096 * 168.93110 * 19 18 17 36 36 H 1.09006 * 109.63824 * 172.87649 * 20 19 18 37 37 H 1.08998 * 109.64296 * 52.24986 * 20 19 18 38 38 H 1.08997 * 109.36085 * 283.05013 * 21 16 15 39 39 H 1.08994 * 109.35945 * 42.78147 * 21 16 15 40 40 H 1.09003 * 117.50034 * 359.97438 * 22 9 7 41 41 H 1.09002 * 117.49971 * 145.02730 * 22 9 7 42 42 H 1.08996 * 117.49810 * 214.97781 * 23 9 7 43 43 H 1.08995 * 117.50078 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0044 -1.1940 0.0005 8 1 3.0816 -1.1957 -0.0787 9 6 1.2546 -2.4970 0.1052 10 6 0.9188 -2.9527 1.5266 11 7 2.1578 -3.2464 2.2508 12 6 2.1052 -3.7590 3.4962 13 8 1.0293 -3.9781 4.0184 14 7 3.2451 -4.0287 4.1627 15 6 3.1879 -4.5864 5.5162 16 6 4.5880 -4.7931 6.0340 17 6 5.1119 -3.8563 6.7575 18 6 6.4945 -3.9162 7.3379 19 6 7.0160 -5.3546 7.3139 20 6 6.7956 -5.9270 5.9079 21 6 5.2901 -6.0695 5.6737 22 6 1.5730 -3.5803 -0.9273 23 6 0.2453 -2.8218 -0.9979 24 1 -0.4850 0.8369 -0.0732 25 1 0.3749 -2.1616 2.0428 26 1 0.3013 -3.8500 1.4840 27 1 3.0162 -3.0718 1.8342 28 1 4.1035 -3.8536 3.7463 29 1 2.6567 -3.8961 6.1715 30 1 2.6637 -5.5419 5.4936 31 1 4.5158 -2.9786 6.9589 32 1 6.4727 -3.5570 8.3668 33 1 7.1575 -3.2815 6.7499 34 1 6.4710 -5.9541 8.0430 35 1 8.0800 -5.3626 7.5501 36 1 7.2725 -6.9042 5.8313 37 1 7.2193 -5.2499 5.1661 38 1 4.9038 -6.8809 6.2905 39 1 5.1099 -6.2969 4.6231 40 1 2.3246 -3.3504 -1.6826 41 1 1.5428 -4.6177 -0.5940 42 1 -0.6578 -3.3605 -0.7110 43 1 0.1233 -2.0928 -1.7990 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583305525.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:26 Heat of formation + Delta-G solvation = -13.645944 kcal Electronic energy + Delta-G solvation = -21391.368862 eV Core-core repulsion = 18243.565971 eV Total energy + Delta-G solvation = -3147.802891 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.61160 -38.64064 -36.72447 -34.57683 -33.21644 -31.94690 -31.32687 -30.92534 -26.76084 -25.57106 -24.53951 -23.38131 -21.70530 -21.14001 -20.25454 -19.35778 -18.10717 -17.41306 -16.48185 -15.73028 -15.40105 -15.11504 -14.64483 -14.54501 -14.10842 -13.92528 -13.87464 -13.64462 -13.20974 -12.82388 -12.59807 -12.50529 -12.26815 -12.18585 -11.66147 -11.51911 -11.06168 -10.95680 -10.94099 -10.69743 -10.53439 -10.39964 -10.21244 -9.76294 -9.46645 -9.03422 -9.01612 -8.79795 -8.46050 -8.20850 -7.94424 -6.05287 -4.15049 1.90819 3.27664 3.33755 3.34727 3.45275 3.83507 4.36320 4.41083 4.48257 4.66137 4.91450 4.96486 5.03552 5.16352 5.22635 5.32132 5.33906 5.41111 5.51329 5.61609 5.72965 5.74612 5.80420 5.82720 5.95708 6.06290 6.07340 6.37803 6.43885 6.51158 6.62490 6.73415 6.77767 6.84483 6.88956 7.14769 7.36660 7.44762 7.49364 7.66014 7.82832 8.36484 8.70131 8.85968 9.24018 9.51807 11.01922 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019680 B = 0.003711 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.449099 B = 7542.952981 C = 8184.679317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.074 3.926 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.500 4.500 8 H 0.058 0.942 9 C 0.025 3.975 10 C 0.182 3.818 11 N -0.721 5.721 12 C 0.697 3.303 13 O -0.605 6.605 14 N -0.750 5.750 15 C 0.175 3.825 16 C -0.139 4.139 17 C -0.133 4.133 18 C -0.092 4.092 19 C -0.121 4.121 20 C -0.120 4.120 21 C -0.082 4.082 22 C -0.211 4.211 23 C -0.142 4.142 24 H 0.262 0.738 25 H 0.064 0.936 26 H 0.037 0.963 27 H 0.396 0.604 28 H 0.394 0.606 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.107 0.893 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.136 -9.757 11.356 19.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.131 4.131 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.538 4.538 8 H 0.077 0.923 9 C 0.024 3.976 10 C 0.059 3.941 11 N -0.373 5.373 12 C 0.397 3.603 13 O -0.485 6.485 14 N -0.407 5.407 15 C 0.050 3.950 16 C -0.139 4.139 17 C -0.152 4.152 18 C -0.129 4.129 19 C -0.158 4.158 20 C -0.158 4.158 21 C -0.119 4.119 22 C -0.248 4.248 23 C -0.180 4.180 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.056 0.944 27 H 0.230 0.770 28 H 0.227 0.773 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.125 0.875 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 11.904 -9.815 11.879 19.472 hybrid contribution 1.098 1.227 -0.444 1.706 sum 13.003 -8.588 11.435 19.328 Atomic orbital electron populations 1.69978 1.05866 1.26945 1.48261 1.24982 0.94815 0.98916 0.94344 0.86692 0.79654 0.83252 0.78562 1.20317 1.21273 1.20215 1.20303 0.92540 0.88637 1.52271 0.92339 1.19040 0.99333 0.93229 0.85978 1.20842 0.83305 0.97656 0.92331 1.45153 1.11220 1.66752 1.14206 1.16072 0.83907 0.78768 0.81585 1.90865 1.27922 1.60735 1.69002 1.45126 1.07632 1.70862 1.17038 1.20105 0.93222 0.98871 0.82767 1.20943 0.96053 0.96849 1.00093 1.22096 0.96874 0.98254 0.97961 1.20472 0.94255 0.97282 1.00856 1.21610 1.00707 0.96107 0.97417 1.21615 0.95894 1.01073 0.97204 1.20388 0.94481 0.95166 1.01884 1.23012 1.00680 0.95620 1.05511 1.22464 0.90802 1.01309 1.03433 0.92827 0.91790 0.94449 0.77031 0.77310 0.91647 0.91598 0.87511 0.91019 0.90701 0.91750 0.91819 0.91696 0.91634 0.90828 0.90786 0.90471 0.91740 0.91808 0.89535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.44 12.65 55.43 0.70 -23.74 16 2 C 0.07 1.96 5.43 -17.82 -0.10 1.87 16 3 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.50 -12.93 8.59 -34.44 -0.30 -13.23 16 8 H 0.06 1.48 7.82 -52.48 -0.41 1.07 16 9 C 0.03 0.59 1.47 -155.66 -0.23 0.36 16 10 C 0.18 4.24 5.50 -4.05 -0.02 4.22 16 11 N -0.72 -14.43 5.48 -65.23 -0.36 -14.79 16 12 C 0.70 13.72 8.57 -86.91 -0.74 12.98 16 13 O -0.61 -14.32 16.34 5.29 0.09 -14.23 16 14 N -0.75 -11.10 5.55 -66.41 -0.37 -11.47 16 15 C 0.17 2.29 5.68 -5.20 -0.03 2.26 16 16 C -0.14 -1.41 5.20 -100.94 -0.53 -1.94 16 17 C -0.13 -1.28 9.37 -35.90 -0.34 -1.61 16 18 C -0.09 -0.71 6.11 -28.18 -0.17 -0.88 16 19 C -0.12 -0.85 6.01 -26.52 -0.16 -1.01 16 20 C -0.12 -0.90 6.01 -26.51 -0.16 -1.06 16 21 C -0.08 -0.72 5.80 -28.18 -0.16 -0.88 16 22 C -0.21 -4.45 9.96 -26.69 -0.27 -4.72 16 23 C -0.14 -3.29 9.14 -26.69 -0.24 -3.54 16 24 H 0.26 7.05 8.32 -40.82 -0.34 6.72 16 25 H 0.06 1.70 8.14 -51.93 -0.42 1.28 16 26 H 0.04 0.87 8.09 -51.92 -0.42 0.45 16 27 H 0.40 7.22 8.34 -40.82 -0.34 6.87 16 28 H 0.39 4.92 8.48 -40.82 -0.35 4.57 16 29 H 0.07 0.93 7.80 -51.92 -0.40 0.52 16 30 H 0.07 0.90 8.11 -51.93 -0.42 0.48 16 31 H 0.11 1.08 7.74 -52.49 -0.41 0.67 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.46 8.12 -51.93 -0.42 0.04 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.51 8.12 -51.93 -0.42 0.09 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.08 1.60 8.14 -51.93 -0.42 1.17 16 41 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 42 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 43 H 0.09 2.14 8.14 -51.93 -0.42 1.72 16 LS Contribution 354.25 15.07 5.34 5.34 Total: -1.00 -30.13 354.25 -10.45 -40.57 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -7.38 Total: 9.84 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: -3.44 Total: -7.18 kcal Atomic # 7 Polarization: -49.97 SS G_CDS: -0.03 Total: -49.99 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: 0.09 Total: -14.23 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.13 -10.45 -40.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583305525.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.928 kcal (2) G-P(sol) polarization free energy of solvation -30.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds