Wall clock time and date at job start Tue Mar 31 2020 00:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 120.00047 * 2 1 4 4 H 1.48494 * 109.47052 * 239.99926 * 3 2 1 5 5 H 1.48500 * 109.47055 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47106 * 119.99366 * 3 2 1 7 7 C 1.37875 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99720 * 175.14336 * 7 2 1 9 9 C 1.50694 * 120.00314 * 355.42420 * 7 2 1 10 10 C 1.52992 * 115.55114 * 274.92789 * 9 7 2 11 11 N 1.46495 * 109.47269 * 294.81128 * 10 9 7 12 12 C 1.34782 * 120.00258 * 184.79147 * 11 10 9 13 13 O 1.21582 * 119.99693 * 0.02562 * 12 11 10 14 14 N 1.34776 * 120.00034 * 180.02562 * 12 11 10 15 15 C 1.46497 * 120.00194 * 180.02562 * 14 12 11 16 16 C 1.50699 * 109.47293 * 180.02562 * 15 14 12 17 17 C 1.29445 * 117.95787 * 94.73885 * 16 15 14 18 18 C 1.50073 * 124.06990 * 180.23654 * 17 16 15 19 19 C 1.53017 * 110.20381 * 343.31349 * 18 17 16 20 20 C 1.53397 * 108.43413 * 49.24828 * 19 18 17 21 21 C 1.50063 * 117.95978 * 274.99875 * 16 15 14 22 22 C 1.53003 * 117.49968 * 129.25534 * 9 7 2 23 23 C 1.53006 * 117.49603 * 60.59599 * 9 7 2 24 24 H 0.97001 * 119.99960 * 5.00103 * 1 2 3 25 25 H 1.09001 * 109.47339 * 54.81686 * 10 9 7 26 26 H 1.09007 * 109.46904 * 174.81223 * 10 9 7 27 27 H 0.96999 * 120.00105 * 4.80424 * 11 10 9 28 28 H 0.97004 * 120.00199 * 0.02562 * 14 12 11 29 29 H 1.09007 * 109.47147 * 300.00790 * 15 14 12 30 30 H 1.09003 * 109.46836 * 59.99708 * 15 14 12 31 31 H 1.07993 * 117.96832 * 0.46234 * 17 16 15 32 32 H 1.08996 * 109.47805 * 222.99398 * 18 17 16 33 33 H 1.09002 * 109.17611 * 103.44869 * 18 17 16 34 34 H 1.08995 * 109.64530 * 289.56855 * 19 18 17 35 35 H 1.09000 * 109.64096 * 168.93110 * 19 18 17 36 36 H 1.09006 * 109.63824 * 172.87649 * 20 19 18 37 37 H 1.08998 * 109.64296 * 52.24986 * 20 19 18 38 38 H 1.08997 * 109.36085 * 283.05013 * 21 16 15 39 39 H 1.08994 * 109.35945 * 42.78147 * 21 16 15 40 40 H 1.09003 * 117.50034 * 359.97438 * 22 9 7 41 41 H 1.09002 * 117.49971 * 145.02730 * 22 9 7 42 42 H 1.08996 * 117.49810 * 214.97781 * 23 9 7 43 43 H 1.08995 * 117.50078 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0044 -1.1940 0.0005 8 1 3.0816 -1.1957 -0.0787 9 6 1.2546 -2.4970 0.1052 10 6 0.9188 -2.9527 1.5266 11 7 2.1578 -3.2464 2.2508 12 6 2.1052 -3.7590 3.4962 13 8 1.0293 -3.9781 4.0184 14 7 3.2451 -4.0287 4.1627 15 6 3.1879 -4.5864 5.5162 16 6 4.5880 -4.7931 6.0340 17 6 5.1119 -3.8563 6.7575 18 6 6.4945 -3.9162 7.3379 19 6 7.0160 -5.3546 7.3139 20 6 6.7956 -5.9270 5.9079 21 6 5.2901 -6.0695 5.6737 22 6 1.5730 -3.5803 -0.9273 23 6 0.2453 -2.8218 -0.9979 24 1 -0.4850 0.8369 -0.0732 25 1 0.3749 -2.1616 2.0428 26 1 0.3013 -3.8500 1.4840 27 1 3.0162 -3.0718 1.8342 28 1 4.1035 -3.8536 3.7463 29 1 2.6567 -3.8961 6.1715 30 1 2.6637 -5.5419 5.4936 31 1 4.5158 -2.9786 6.9589 32 1 6.4727 -3.5570 8.3668 33 1 7.1575 -3.2815 6.7499 34 1 6.4710 -5.9541 8.0430 35 1 8.0800 -5.3626 7.5501 36 1 7.2725 -6.9042 5.8313 37 1 7.2193 -5.2499 5.1661 38 1 4.9038 -6.8809 6.2905 39 1 5.1099 -6.2969 4.6231 40 1 2.3246 -3.3504 -1.6826 41 1 1.5428 -4.6177 -0.5940 42 1 -0.6578 -3.3605 -0.7110 43 1 0.1233 -2.0928 -1.7990 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583305525.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:25 Heat of formation + Delta-G solvation = -31.441774 kcal Electronic energy + Delta-G solvation = -21392.140547 eV Core-core repulsion = 18243.565971 eV Total energy + Delta-G solvation = -3148.574576 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.03954 -39.58041 -38.50308 -35.79381 -34.94566 -33.94401 -32.28408 -31.60066 -28.33633 -27.34075 -25.95518 -24.06742 -22.94653 -22.39869 -21.80999 -21.23067 -19.46296 -18.39460 -18.08053 -17.23262 -16.73920 -16.50438 -16.33997 -15.73726 -15.44826 -15.21176 -14.88109 -14.74462 -14.51438 -14.40825 -13.81711 -13.52128 -13.42141 -13.17190 -13.03373 -12.93264 -12.88193 -12.78828 -12.38244 -12.01083 -11.62572 -11.50283 -11.33913 -11.28236 -11.06679 -10.93114 -10.43663 -10.29992 -10.03949 -9.83103 -9.59426 -8.07907 -6.22291 1.03742 1.43720 1.45448 1.51658 2.04938 2.23437 2.43273 3.19996 3.39260 3.62564 3.66365 3.78804 4.10260 4.25230 4.25921 4.35135 4.46870 4.56577 4.58312 4.66776 4.71270 4.73720 4.75012 4.77014 5.00219 5.03254 5.03915 5.07718 5.10575 5.22048 5.30053 5.33625 5.47867 5.52981 5.57110 5.63486 5.68205 5.73927 5.79502 6.02637 6.15987 6.38072 6.84994 7.22911 7.47301 7.67101 8.98992 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019680 B = 0.003711 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.449099 B = 7542.952981 C = 8184.679317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.024 3.976 3 Si 0.951 3.049 4 H -0.268 1.268 5 H -0.292 1.292 6 H -0.273 1.273 7 C -0.505 4.505 8 H 0.064 0.936 9 C 0.004 3.996 10 C 0.200 3.800 11 N -0.715 5.715 12 C 0.695 3.305 13 O -0.648 6.648 14 N -0.729 5.729 15 C 0.174 3.826 16 C -0.143 4.143 17 C -0.127 4.127 18 C -0.092 4.092 19 C -0.120 4.120 20 C -0.118 4.118 21 C -0.081 4.081 22 C -0.176 4.176 23 C -0.153 4.153 24 H 0.259 0.741 25 H 0.021 0.979 26 H 0.034 0.966 27 H 0.407 0.593 28 H 0.408 0.592 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.063 0.937 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.063 0.937 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.068 0.932 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.872 -10.440 11.771 22.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.177 4.177 3 Si 0.777 3.223 4 H -0.193 1.193 5 H -0.218 1.218 6 H -0.198 1.198 7 C -0.542 4.542 8 H 0.082 0.918 9 C 0.003 3.997 10 C 0.075 3.925 11 N -0.369 5.369 12 C 0.394 3.606 13 O -0.531 6.531 14 N -0.385 5.385 15 C 0.051 3.949 16 C -0.143 4.143 17 C -0.146 4.146 18 C -0.129 4.129 19 C -0.157 4.157 20 C -0.156 4.156 21 C -0.118 4.118 22 C -0.213 4.213 23 C -0.191 4.191 24 H 0.068 0.932 25 H 0.040 0.960 26 H 0.053 0.947 27 H 0.242 0.758 28 H 0.244 0.756 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.116 0.884 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.087 0.913 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 14.717 -10.510 12.297 21.870 hybrid contribution 0.253 1.417 -0.525 1.532 sum 14.971 -9.092 11.772 21.104 Atomic orbital electron populations 1.70109 1.07272 1.27349 1.49814 1.25713 0.95482 1.02100 0.94401 0.85735 0.78371 0.79412 0.78812 1.19315 1.21774 1.19835 1.20636 0.92947 0.89537 1.51124 0.91786 1.19053 1.00253 0.93959 0.86429 1.20405 0.84188 0.95945 0.92009 1.44924 1.10655 1.66872 1.14403 1.16236 0.84458 0.78478 0.81393 1.90836 1.29951 1.62432 1.69856 1.44999 1.06809 1.69422 1.17292 1.20192 0.95323 0.97968 0.81456 1.20798 0.94530 0.98068 1.00921 1.22269 0.97795 0.97477 0.97057 1.20529 0.92839 0.98134 1.01368 1.21621 1.01588 0.95380 0.97112 1.21614 0.94718 1.01802 0.97425 1.20397 0.95407 0.94301 1.01687 1.22993 0.98878 0.95880 1.03587 1.22390 0.92115 1.01804 1.02834 0.93231 0.96016 0.94735 0.75775 0.75605 0.93012 0.92184 0.88360 0.89979 0.90045 0.91783 0.90369 0.90481 0.91799 0.90382 0.91195 0.89597 0.89489 0.91320 0.91604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.72 12.65 21.45 0.27 -51.45 16 2 C 0.02 1.26 5.43 84.65 0.46 1.72 16 3 Si 0.95 42.34 29.54 68.60 2.03 44.37 16 4 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 5 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.50 -25.85 8.59 25.60 0.22 -25.63 16 8 H 0.06 3.14 7.82 -2.91 -0.02 3.11 16 9 C 0.00 0.18 1.47 -52.93 -0.08 0.10 16 10 C 0.20 9.40 5.50 86.38 0.48 9.87 16 11 N -0.72 -28.34 5.48 -478.55 -2.62 -30.97 16 12 C 0.69 27.29 8.57 179.05 1.53 28.82 16 13 O -0.65 -31.19 16.34 -3.97 -0.06 -31.26 16 14 N -0.73 -20.97 5.55 -482.29 -2.68 -23.65 16 15 C 0.17 4.49 5.68 85.63 0.49 4.98 16 16 C -0.14 -2.71 5.20 -15.10 -0.08 -2.79 16 17 C -0.13 -2.23 9.37 27.04 0.25 -1.98 16 18 C -0.09 -1.19 6.11 29.66 0.18 -1.01 16 19 C -0.12 -1.35 6.01 30.73 0.18 -1.16 16 20 C -0.12 -1.45 6.01 30.73 0.18 -1.27 16 21 C -0.08 -1.26 5.80 29.66 0.17 -1.08 16 22 C -0.18 -7.10 9.96 30.62 0.30 -6.79 16 23 C -0.15 -7.10 9.14 30.62 0.28 -6.82 16 24 H 0.26 14.26 8.32 -92.71 -0.77 13.48 16 25 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.03 1.62 8.09 -2.38 -0.02 1.60 16 27 H 0.41 14.27 8.34 -92.71 -0.77 13.50 16 28 H 0.41 9.51 8.48 -92.71 -0.79 8.72 16 29 H 0.05 1.48 7.80 -2.38 -0.02 1.46 16 30 H 0.06 1.63 8.11 -2.39 -0.02 1.61 16 31 H 0.10 1.89 7.74 -2.91 -0.02 1.87 16 32 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.06 0.74 8.12 -2.39 -0.02 0.72 16 35 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 37 H 0.06 0.82 8.12 -2.39 -0.02 0.80 16 38 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 41 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 42 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 43 H 0.07 3.30 8.14 -2.39 -0.02 3.28 16 Total: -1.00 -64.94 354.25 0.94 -63.99 By element: Atomic # 1 Polarization: 32.55 SS G_CDS: -0.57 Total: 31.99 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: 4.58 Total: -3.02 kcal Atomic # 7 Polarization: -101.03 SS G_CDS: -5.03 Total: -106.06 kcal Atomic # 8 Polarization: -31.19 SS G_CDS: -0.06 Total: -31.26 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -64.94 0.94 -63.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583305525.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.550 kcal (2) G-P(sol) polarization free energy of solvation -64.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds