Wall clock time and date at job start Tue Mar 31 2020 00:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48492 * 109.47487 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47233 * 300.00179 * 3 2 1 6 6 H 1.48508 * 109.46883 * 59.99983 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 H 1.09002 * 110.67135 * 56.76779 * 9 7 2 11 11 C 1.54885 * 110.75780 * 293.32661 * 9 7 2 12 12 C 1.54261 * 104.19817 * 203.74593 * 11 9 7 13 13 C 1.53877 * 106.59853 * 23.60655 * 12 11 9 14 14 H 1.08997 * 110.04012 * 240.71753 * 13 12 11 15 15 N 1.46509 * 110.03123 * 119.28443 * 13 12 11 16 16 C 1.34777 * 119.99572 * 87.83768 * 15 13 12 17 17 O 1.21583 * 120.00142 * 359.97438 * 16 15 13 18 18 N 1.34775 * 119.99364 * 180.02562 * 16 15 13 19 19 C 1.46503 * 119.99500 * 179.97438 * 18 16 15 20 20 H 1.09002 * 109.35862 * 324.99486 * 19 18 16 21 21 C 1.50073 * 109.35988 * 84.72302 * 19 18 16 22 22 C 1.29252 * 124.21755 * 137.48697 * 21 19 18 23 23 C 1.50067 * 124.01799 * 359.26920 * 22 21 19 24 24 C 1.53016 * 110.15153 * 17.26349 * 23 22 21 25 25 C 1.53025 * 109.35569 * 205.27680 * 19 18 16 26 26 C 1.54272 * 106.59555 * 0.02562 * 13 12 11 27 27 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 28 28 H 1.08997 * 110.48739 * 322.42539 * 11 9 7 29 29 H 1.08998 * 110.48608 * 85.06743 * 11 9 7 30 30 H 1.09002 * 110.03573 * 264.33098 * 12 11 9 31 31 H 1.08999 * 110.07547 * 142.91293 * 12 11 9 32 32 H 0.96999 * 119.99890 * 267.83614 * 15 13 12 33 33 H 0.96992 * 120.00494 * 359.97438 * 18 16 15 34 34 H 1.08001 * 117.95865 * 317.31375 * 21 19 18 35 35 H 1.07997 * 118.01707 * 179.37619 * 22 21 19 36 36 H 1.08999 * 109.35694 * 257.05000 * 23 22 21 37 37 H 1.09006 * 109.35262 * 137.46991 * 23 22 21 38 38 H 1.08997 * 109.64826 * 190.87478 * 24 23 22 39 39 H 1.09004 * 109.64257 * 70.23991 * 24 23 22 40 40 H 1.09000 * 109.64412 * 310.03717 * 25 19 18 41 41 H 1.08996 * 109.64629 * 70.46081 * 25 19 18 42 42 H 1.09001 * 110.48306 * 217.70684 * 26 13 12 43 43 H 1.08998 * 110.48936 * 95.06763 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 1 0.5749 -2.5523 -0.8551 11 6 0.4794 -2.6887 1.3278 12 6 0.2961 -4.2159 1.4446 13 6 1.4097 -4.8581 0.5989 14 1 0.9734 -5.4593 -0.1988 15 7 2.2654 -5.6926 1.4462 16 6 1.9461 -6.9841 1.6619 17 8 0.9477 -7.4565 1.1537 18 7 2.7330 -7.7515 2.4418 19 6 2.3856 -9.1552 2.6767 20 1 1.3013 -9.2563 2.7228 21 6 2.9160 -9.9941 1.5511 22 6 3.4959 -11.1385 1.7081 23 6 3.7344 -11.7827 3.0423 24 6 2.8449 -11.1364 4.1064 25 6 2.9945 -9.6131 4.0039 26 6 2.2312 -3.6986 -0.0017 27 1 -0.4849 0.8400 0.0004 28 1 1.0642 -2.3095 2.1658 29 1 -0.4891 -2.1907 1.2811 30 1 -0.6807 -4.5055 1.0572 31 1 0.3918 -4.5257 2.4852 32 1 3.0617 -5.3155 1.8519 33 1 3.5292 -7.3745 2.8476 34 1 2.8042 -9.6196 0.5442 35 1 3.8309 -11.6629 0.8254 36 1 4.7806 -11.6583 3.3217 37 1 3.5042 -12.8462 2.9763 38 1 3.1566 -11.4694 5.0963 39 1 1.8053 -11.4147 3.9333 40 1 4.0508 -9.3460 4.0339 41 1 2.4718 -9.1339 4.8316 42 1 2.5411 -3.9376 -1.0191 43 1 3.0990 -3.4829 0.6216 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584762681.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:14 Heat of formation + Delta-G solvation = -39.139256 kcal Electronic energy + Delta-G solvation = -21470.003499 eV Core-core repulsion = 18321.095135 eV Total energy + Delta-G solvation = -3148.908364 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.13464 -38.55440 -37.00303 -34.08449 -33.55149 -31.91214 -31.31436 -29.34414 -28.09948 -26.75269 -23.94703 -23.11242 -22.62523 -20.81571 -19.62389 -19.16840 -18.44145 -17.75361 -16.87280 -16.38247 -15.67601 -15.24794 -14.64163 -14.58494 -14.22925 -14.08374 -13.72944 -13.37652 -13.05643 -12.87050 -12.63277 -12.49035 -12.30190 -11.75572 -11.45498 -11.12652 -11.00881 -10.91670 -10.90704 -10.62210 -10.52957 -10.27924 -9.96002 -9.78130 -9.53240 -9.27464 -9.19289 -9.07823 -8.79173 -8.44393 -8.35261 -6.00161 -4.03147 2.03757 3.01274 3.29613 3.37966 3.41006 3.47036 4.38083 4.44282 4.46838 4.51508 4.70500 4.90149 5.11501 5.22622 5.26789 5.32111 5.35205 5.55203 5.57676 5.61550 5.71625 5.73285 5.88210 5.94765 6.02408 6.36257 6.37646 6.41451 6.52973 6.61655 6.71242 6.77446 6.79928 6.93365 6.99974 7.12875 7.30351 7.40543 7.71667 7.88751 8.03637 8.27849 8.44432 8.87662 8.99727 9.60886 11.09544 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.046292 B = 0.002896 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.715992 B = 9666.258493 C = 9760.856697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.062 3.938 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.513 4.513 8 H 0.055 0.945 9 C 0.051 3.949 10 H 0.036 0.964 11 C -0.102 4.102 12 C -0.134 4.134 13 C 0.156 3.844 14 H 0.079 0.921 15 N -0.734 5.734 16 C 0.700 3.300 17 O -0.594 6.594 18 N -0.746 5.746 19 C 0.195 3.805 20 H 0.096 0.904 21 C -0.154 4.154 22 C -0.156 4.156 23 C -0.092 4.092 24 C -0.117 4.117 25 C -0.126 4.126 26 C -0.121 4.121 27 H 0.259 0.741 28 H 0.046 0.954 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.049 0.951 32 H 0.392 0.608 33 H 0.394 0.606 34 H 0.105 0.895 35 H 0.102 0.898 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.053 0.947 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.895 -20.040 8.257 23.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.551 4.551 8 H 0.074 0.926 9 C 0.032 3.968 10 H 0.054 0.946 11 C -0.141 4.141 12 C -0.173 4.173 13 C 0.052 3.948 14 H 0.098 0.902 15 N -0.387 5.387 16 C 0.400 3.600 17 O -0.472 6.472 18 N -0.401 5.401 19 C 0.089 3.911 20 H 0.114 0.886 21 C -0.174 4.174 22 C -0.175 4.175 23 C -0.129 4.129 24 C -0.155 4.155 25 C -0.164 4.164 26 C -0.159 4.159 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.226 0.774 33 H 0.228 0.772 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.071 0.929 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.787 -20.328 7.759 22.792 hybrid contribution 1.194 1.312 0.275 1.795 sum 7.981 -19.016 8.034 22.132 Atomic orbital electron populations 1.69971 1.05878 1.26344 1.50476 1.24988 0.94826 0.99023 0.95129 0.86594 0.80124 0.84060 0.77534 1.19847 1.21079 1.21124 1.21136 0.92751 0.90436 1.50778 0.92637 1.19565 0.92397 0.90938 0.93861 0.94610 1.22332 1.01405 0.90549 0.99798 1.22650 0.97603 0.98652 0.98415 1.21735 0.90790 0.90675 0.91632 0.90240 1.45553 1.29867 1.09191 1.54111 1.16070 0.82988 0.81357 0.79552 1.90898 1.27941 1.73530 1.54858 1.45207 1.29469 1.10934 1.54516 1.19534 1.00476 0.78921 0.92138 0.88636 1.22483 0.98805 0.96004 1.00081 1.21984 1.00429 0.96989 0.98123 1.20477 1.00010 0.99559 0.92842 1.21574 1.00635 0.94340 0.98930 1.21866 1.01546 0.96477 0.96518 1.22766 0.99067 0.95243 0.98826 0.93114 0.93542 0.91636 0.92623 0.93263 0.77392 0.77246 0.87699 0.87949 0.90927 0.91080 0.91177 0.91307 0.91194 0.90882 0.92867 0.92203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.46 12.41 55.43 0.69 -24.77 16 2 C 0.06 1.71 5.36 -17.82 -0.10 1.61 16 3 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.51 -13.78 8.49 -34.44 -0.29 -14.07 16 8 H 0.06 1.47 7.77 -52.49 -0.41 1.06 16 9 C 0.05 1.25 2.73 -89.77 -0.25 1.00 16 10 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 11 C -0.10 -2.37 5.75 -25.08 -0.14 -2.51 16 12 C -0.13 -2.67 6.59 -25.61 -0.17 -2.84 16 13 C 0.16 2.90 3.25 -66.80 -0.22 2.68 16 14 H 0.08 1.58 7.57 -51.93 -0.39 1.19 16 15 N -0.73 -11.34 4.99 -57.57 -0.29 -11.62 16 16 C 0.70 11.17 8.51 -86.92 -0.74 10.43 16 17 O -0.59 -11.90 15.66 5.29 0.08 -11.82 16 18 N -0.75 -8.71 5.06 -60.10 -0.30 -9.02 16 19 C 0.19 2.11 2.71 -69.37 -0.19 1.93 16 20 H 0.10 1.25 7.57 -51.93 -0.39 0.85 16 21 C -0.15 -1.70 9.31 -35.85 -0.33 -2.03 16 22 C -0.16 -1.39 9.80 -35.85 -0.35 -1.75 16 23 C -0.09 -0.63 6.11 -28.18 -0.17 -0.80 16 24 C -0.12 -0.79 6.01 -26.52 -0.16 -0.95 16 25 C -0.13 -0.97 5.48 -26.51 -0.15 -1.12 16 26 C -0.12 -2.40 5.94 -25.06 -0.15 -2.55 16 27 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 28 H 0.05 1.09 8.04 -51.93 -0.42 0.67 16 29 H 0.06 1.66 7.63 -51.93 -0.40 1.26 16 30 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.05 0.94 7.92 -51.93 -0.41 0.52 16 32 H 0.39 5.05 8.37 -40.82 -0.34 4.71 16 33 H 0.39 3.51 8.60 -40.82 -0.35 3.16 16 34 H 0.10 1.37 8.06 -52.49 -0.42 0.94 16 35 H 0.10 0.84 8.06 -52.49 -0.42 0.41 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.50 8.12 -51.93 -0.42 0.07 16 40 H 0.07 0.49 8.11 -51.93 -0.42 0.07 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.06 1.14 7.63 -51.93 -0.40 0.74 16 LS Contribution 343.76 15.07 5.18 5.18 Total: -1.00 -30.93 343.76 -10.35 -41.28 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -7.29 Total: 5.69 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: -3.40 Total: -10.96 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: 0.10 Total: -45.41 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.08 Total: -11.82 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.93 -10.35 -41.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584762681.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.141 kcal (2) G-P(sol) polarization free energy of solvation -30.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds