Wall clock time and date at job start Tue Mar 31 2020 00:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99684 * 2 1 4 4 H 1.48502 * 109.46764 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47102 * 299.99020 * 3 2 1 6 6 H 1.48498 * 109.47462 * 59.99776 * 3 2 1 7 7 C 1.37869 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00136 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00267 * 0.02562 * 7 2 1 10 10 H 1.09004 * 110.43098 * 57.45550 * 9 7 2 11 11 C 1.54265 * 110.48496 * 294.77624 * 9 7 2 12 12 C 1.53877 * 106.59605 * 217.70899 * 11 9 7 13 13 C 1.54463 * 106.68421 * 0.15594 * 12 11 9 14 14 H 1.09003 * 110.40626 * 264.75463 * 13 12 11 15 15 N 1.46505 * 110.65957 * 142.05289 * 13 12 11 16 16 C 1.34779 * 119.99750 * 90.24214 * 15 13 12 17 17 O 1.21585 * 120.00106 * 359.97438 * 16 15 13 18 18 N 1.34775 * 119.99657 * 180.02562 * 16 15 13 19 19 C 1.46499 * 119.99882 * 179.97438 * 18 16 15 20 20 H 1.09006 * 109.35705 * 35.27605 * 19 18 16 21 21 C 1.50070 * 109.35990 * 275.69205 * 19 18 16 22 22 C 1.29448 * 124.07152 * 222.66341 * 21 19 18 23 23 C 1.50067 * 124.07612 * 0.46259 * 22 21 19 24 24 C 1.53026 * 110.14958 * 342.87272 * 23 22 21 25 25 C 1.53025 * 109.35876 * 154.99743 * 19 18 16 26 26 C 1.54887 * 110.48805 * 179.97438 * 9 7 2 27 27 H 0.97007 * 120.00152 * 0.02562 * 1 2 3 28 28 H 1.08995 * 110.03137 * 336.98824 * 11 9 7 29 29 H 1.08993 * 110.03408 * 98.42557 * 11 9 7 30 30 H 1.08999 * 110.03493 * 119.28247 * 12 11 9 31 31 H 1.09003 * 110.03187 * 240.66884 * 12 11 9 32 32 H 0.97002 * 119.99898 * 270.24048 * 15 13 12 33 33 H 0.97001 * 120.00577 * 359.97438 * 18 16 15 34 34 H 1.07988 * 117.96366 * 42.63875 * 21 19 18 35 35 H 1.08001 * 117.95845 * 180.49321 * 22 21 19 36 36 H 1.09001 * 109.35848 * 222.65927 * 23 22 21 37 37 H 1.08998 * 109.35595 * 103.08205 * 23 22 21 38 38 H 1.08997 * 109.63938 * 289.74772 * 24 23 22 39 39 H 1.09001 * 109.63829 * 169.12159 * 24 23 22 40 40 H 1.08993 * 109.64304 * 289.32838 * 25 19 18 41 41 H 1.09000 * 109.64262 * 49.75113 * 25 19 18 42 42 H 1.09002 * 110.75856 * 274.93801 * 26 9 7 43 43 H 1.09006 * 110.75640 * 38.12787 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.5853 -2.5541 -0.8608 11 6 0.4562 -2.6636 1.3123 12 6 0.5408 -4.1520 1.6938 13 6 1.3883 -4.8420 0.6023 14 1 0.7433 -5.2794 -0.1599 15 7 2.2551 -5.8659 1.1912 16 6 1.8156 -7.1345 1.3090 17 8 0.6995 -7.4292 0.9270 18 7 2.6128 -8.0762 1.8512 19 6 2.1349 -9.4551 1.9798 20 1 1.5030 -9.6996 1.1259 21 6 1.3340 -9.5883 3.2419 22 6 1.4259 -10.5900 4.0567 23 6 2.3532 -11.7530 3.8583 24 6 2.8337 -11.8022 2.4062 25 6 3.3331 -10.4062 2.0129 26 6 2.2366 -3.6940 0.0005 27 1 -0.4851 0.8401 -0.0004 28 1 0.9001 -2.0513 2.0972 29 1 -0.5838 -2.3765 1.1573 30 1 1.0257 -4.2619 2.6638 31 1 -0.4583 -4.5869 1.7247 32 1 3.1454 -5.6306 1.4963 33 1 3.5031 -7.8411 2.1563 34 1 0.6381 -8.7994 3.4857 35 1 0.7955 -10.5888 4.9337 36 1 1.8286 -12.6782 4.0968 37 1 3.2128 -11.6467 4.5199 38 1 2.0079 -12.0925 1.7567 39 1 3.6471 -12.5220 2.3137 40 1 3.7959 -10.4471 1.0270 41 1 4.0603 -10.0542 2.7447 42 1 2.5501 -3.9362 -1.0149 43 1 3.1010 -3.4818 0.6299 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584762682.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:17 Heat of formation + Delta-G solvation = -40.309551 kcal Electronic energy + Delta-G solvation = -21449.471534 eV Core-core repulsion = 18300.512423 eV Total energy + Delta-G solvation = -3148.959111 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.12725 -38.52650 -36.99658 -34.09194 -33.60010 -31.92727 -31.30130 -29.35373 -28.08593 -26.73578 -23.92221 -23.08955 -22.63394 -20.77290 -19.84702 -19.07589 -18.40728 -17.79079 -16.88763 -16.32523 -15.71754 -15.06069 -14.74722 -14.57975 -14.27308 -14.13587 -13.70843 -13.41715 -13.05964 -12.87590 -12.57119 -12.45393 -12.33543 -11.76590 -11.46533 -11.19223 -10.99680 -10.95117 -10.83272 -10.61694 -10.52276 -10.28043 -9.96661 -9.83009 -9.54543 -9.25646 -9.21462 -9.08068 -8.71180 -8.42346 -8.36892 -5.99431 -4.02458 2.03590 2.99816 3.30183 3.38462 3.41465 3.45733 4.36958 4.44498 4.46823 4.50382 4.69900 4.89912 5.11372 5.21955 5.26772 5.32672 5.34708 5.54419 5.57458 5.61011 5.70973 5.71081 5.90372 5.94122 6.02294 6.35199 6.37601 6.42203 6.53263 6.57162 6.71594 6.75793 6.79687 6.94282 7.02047 7.11079 7.34405 7.38133 7.73302 7.90417 8.03648 8.26279 8.46019 8.86380 9.00676 9.61541 11.10414 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.049626 B = 0.002878 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.080441 B = 9725.601627 C = 9898.546968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.061 3.939 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.513 4.513 8 H 0.056 0.944 9 C 0.051 3.949 10 H 0.034 0.966 11 C -0.096 4.096 12 C -0.134 4.134 13 C 0.153 3.847 14 H 0.086 0.914 15 N -0.734 5.734 16 C 0.701 3.299 17 O -0.593 6.593 18 N -0.746 5.746 19 C 0.194 3.806 20 H 0.095 0.905 21 C -0.155 4.155 22 C -0.157 4.157 23 C -0.092 4.092 24 C -0.117 4.117 25 C -0.125 4.125 26 C -0.119 4.119 27 H 0.259 0.741 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.392 0.608 33 H 0.394 0.606 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.052 0.948 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.491 -21.265 6.860 23.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.551 4.551 8 H 0.074 0.926 9 C 0.032 3.968 10 H 0.052 0.948 11 C -0.135 4.135 12 C -0.173 4.173 13 C 0.049 3.951 14 H 0.104 0.896 15 N -0.387 5.387 16 C 0.401 3.599 17 O -0.471 6.471 18 N -0.401 5.401 19 C 0.089 3.911 20 H 0.113 0.887 21 C -0.174 4.174 22 C -0.176 4.176 23 C -0.129 4.129 24 C -0.155 4.155 25 C -0.164 4.164 26 C -0.158 4.158 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.226 0.774 33 H 0.227 0.773 34 H 0.124 0.876 35 H 0.121 0.879 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.071 0.929 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.277 -21.386 6.477 23.210 hybrid contribution 1.107 1.302 0.523 1.788 sum 7.384 -20.083 6.999 22.513 Atomic orbital electron populations 1.69984 1.05873 1.26343 1.50444 1.24990 0.94827 0.99026 0.95180 0.86595 0.80124 0.84076 0.77531 1.19844 1.21085 1.21124 1.21158 0.92756 0.90413 1.50801 0.92614 1.19405 0.92335 0.91151 0.93934 0.94826 1.22081 1.01059 0.90665 0.99703 1.22669 0.98702 0.98436 0.97514 1.21983 0.91772 0.86326 0.95037 0.89623 1.45421 1.19266 1.07357 1.66640 1.16068 0.84377 0.80901 0.78591 1.90906 1.19473 1.80900 1.55813 1.45208 1.18602 1.08630 1.67688 1.19535 0.94702 0.80161 0.96676 0.88677 1.22539 0.99893 0.98716 0.96248 1.22036 1.00011 0.96096 0.99424 1.20475 0.98453 0.97097 0.96842 1.21575 1.01168 0.96229 0.96505 1.21858 0.97107 0.95027 1.02368 1.22867 0.98902 0.95195 0.98801 0.93118 0.92995 0.92630 0.93224 0.93081 0.77445 0.77264 0.87606 0.87943 0.91071 0.90930 0.91297 0.91183 0.90924 0.91171 0.92906 0.92179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.60 12.63 55.43 0.70 -24.90 16 2 C 0.06 1.70 5.35 -17.82 -0.10 1.60 16 3 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.51 -13.84 8.36 -34.44 -0.29 -14.13 16 8 H 0.06 1.48 7.77 -52.48 -0.41 1.07 16 9 C 0.05 1.24 2.73 -90.11 -0.25 1.00 16 10 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 11 C -0.10 -2.26 5.60 -25.61 -0.14 -2.40 16 12 C -0.13 -2.67 6.55 -25.51 -0.17 -2.84 16 13 C 0.15 2.85 3.23 -66.15 -0.21 2.64 16 14 H 0.09 1.74 7.56 -51.93 -0.39 1.35 16 15 N -0.73 -11.18 5.11 -56.94 -0.29 -11.47 16 16 C 0.70 11.10 8.51 -86.92 -0.74 10.36 16 17 O -0.59 -11.91 15.66 5.29 0.08 -11.82 16 18 N -0.75 -8.59 5.06 -60.10 -0.30 -8.89 16 19 C 0.19 2.09 2.70 -69.37 -0.19 1.91 16 20 H 0.10 1.23 7.58 -51.93 -0.39 0.83 16 21 C -0.15 -1.72 9.32 -35.90 -0.33 -2.06 16 22 C -0.16 -1.42 9.80 -35.90 -0.35 -1.77 16 23 C -0.09 -0.63 6.12 -28.18 -0.17 -0.80 16 24 C -0.12 -0.77 6.01 -26.52 -0.16 -0.93 16 25 C -0.13 -0.94 5.48 -26.52 -0.15 -1.09 16 26 C -0.12 -2.37 5.89 -24.73 -0.15 -2.52 16 27 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.05 1.27 7.83 -51.93 -0.41 0.87 16 29 H 0.05 1.40 8.06 -51.93 -0.42 0.98 16 30 H 0.05 0.93 8.04 -51.93 -0.42 0.51 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.39 4.86 8.58 -40.82 -0.35 4.51 16 33 H 0.39 3.41 8.60 -40.82 -0.35 3.06 16 34 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 35 H 0.10 0.86 8.06 -52.49 -0.42 0.44 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.49 8.12 -51.93 -0.42 0.07 16 39 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.47 8.11 -51.93 -0.42 0.05 16 42 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.06 1.14 7.92 -51.93 -0.41 0.73 16 LS Contribution 344.53 15.07 5.19 5.19 Total: -1.00 -31.18 344.53 -10.36 -41.54 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -7.33 Total: 5.26 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: -3.39 Total: -11.03 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: 0.11 Total: -45.26 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.08 Total: -11.82 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.18 -10.36 -41.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584762682.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.229 kcal (2) G-P(sol) polarization free energy of solvation -31.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds