Wall clock time and date at job start Tue Mar 31 2020 00:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99684 * 2 1 4 4 H 1.48502 * 109.46764 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47102 * 299.99020 * 3 2 1 6 6 H 1.48498 * 109.47462 * 59.99776 * 3 2 1 7 7 C 1.37869 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00136 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00267 * 0.02562 * 7 2 1 10 10 H 1.09004 * 110.43098 * 57.45550 * 9 7 2 11 11 C 1.54265 * 110.48496 * 294.77624 * 9 7 2 12 12 C 1.53877 * 106.59605 * 217.70899 * 11 9 7 13 13 C 1.54463 * 106.68421 * 0.15594 * 12 11 9 14 14 H 1.09003 * 110.40626 * 264.75463 * 13 12 11 15 15 N 1.46505 * 110.65957 * 142.05289 * 13 12 11 16 16 C 1.34779 * 119.99750 * 90.24214 * 15 13 12 17 17 O 1.21585 * 120.00106 * 359.97438 * 16 15 13 18 18 N 1.34775 * 119.99657 * 180.02562 * 16 15 13 19 19 C 1.46499 * 119.99882 * 179.97438 * 18 16 15 20 20 H 1.09006 * 109.35705 * 35.27605 * 19 18 16 21 21 C 1.50070 * 109.35990 * 275.69205 * 19 18 16 22 22 C 1.29448 * 124.07152 * 222.66341 * 21 19 18 23 23 C 1.50067 * 124.07612 * 0.46259 * 22 21 19 24 24 C 1.53026 * 110.14958 * 342.87272 * 23 22 21 25 25 C 1.53025 * 109.35876 * 154.99743 * 19 18 16 26 26 C 1.54887 * 110.48805 * 179.97438 * 9 7 2 27 27 H 0.97007 * 120.00152 * 0.02562 * 1 2 3 28 28 H 1.08995 * 110.03137 * 336.98824 * 11 9 7 29 29 H 1.08993 * 110.03408 * 98.42557 * 11 9 7 30 30 H 1.08999 * 110.03493 * 119.28247 * 12 11 9 31 31 H 1.09003 * 110.03187 * 240.66884 * 12 11 9 32 32 H 0.97002 * 119.99898 * 270.24048 * 15 13 12 33 33 H 0.97001 * 120.00577 * 359.97438 * 18 16 15 34 34 H 1.07988 * 117.96366 * 42.63875 * 21 19 18 35 35 H 1.08001 * 117.95845 * 180.49321 * 22 21 19 36 36 H 1.09001 * 109.35848 * 222.65927 * 23 22 21 37 37 H 1.08998 * 109.35595 * 103.08205 * 23 22 21 38 38 H 1.08997 * 109.63938 * 289.74772 * 24 23 22 39 39 H 1.09001 * 109.63829 * 169.12159 * 24 23 22 40 40 H 1.08993 * 109.64304 * 289.32838 * 25 19 18 41 41 H 1.09000 * 109.64262 * 49.75113 * 25 19 18 42 42 H 1.09002 * 110.75856 * 274.93801 * 26 9 7 43 43 H 1.09006 * 110.75640 * 38.12787 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.5853 -2.5541 -0.8608 11 6 0.4562 -2.6636 1.3123 12 6 0.5408 -4.1520 1.6938 13 6 1.3883 -4.8420 0.6023 14 1 0.7433 -5.2794 -0.1599 15 7 2.2551 -5.8659 1.1912 16 6 1.8156 -7.1345 1.3090 17 8 0.6995 -7.4292 0.9270 18 7 2.6128 -8.0762 1.8512 19 6 2.1349 -9.4551 1.9798 20 1 1.5030 -9.6996 1.1259 21 6 1.3340 -9.5883 3.2419 22 6 1.4259 -10.5900 4.0567 23 6 2.3532 -11.7530 3.8583 24 6 2.8337 -11.8022 2.4062 25 6 3.3331 -10.4062 2.0129 26 6 2.2366 -3.6940 0.0005 27 1 -0.4851 0.8401 -0.0004 28 1 0.9001 -2.0513 2.0972 29 1 -0.5838 -2.3765 1.1573 30 1 1.0257 -4.2619 2.6638 31 1 -0.4583 -4.5869 1.7247 32 1 3.1454 -5.6306 1.4963 33 1 3.5031 -7.8411 2.1563 34 1 0.6381 -8.7994 3.4857 35 1 0.7955 -10.5888 4.9337 36 1 1.8286 -12.6782 4.0968 37 1 3.2128 -11.6467 4.5199 38 1 2.0079 -12.0925 1.7567 39 1 3.6471 -12.5220 2.3137 40 1 3.7959 -10.4471 1.0270 41 1 4.0603 -10.0542 2.7447 42 1 2.5501 -3.9362 -1.0149 43 1 3.1010 -3.4818 0.6299 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584762682.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:16 Heat of formation + Delta-G solvation = -59.655471 kcal Electronic energy + Delta-G solvation = -21450.310436 eV Core-core repulsion = 18300.512423 eV Total energy + Delta-G solvation = -3149.798013 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.01 seconds Orbital eigenvalues (eV) -41.30622 -39.55029 -38.51099 -35.30298 -35.13023 -33.72644 -31.97195 -30.34781 -29.87211 -28.35543 -25.77524 -24.00981 -23.30373 -21.99500 -21.45874 -20.85533 -19.50468 -18.69877 -18.46352 -17.62207 -16.92862 -16.58498 -16.30353 -15.95527 -15.70388 -15.36531 -14.55850 -14.39118 -14.31370 -14.06418 -13.74009 -13.63716 -13.47816 -13.21760 -13.07224 -12.81042 -12.54145 -12.35534 -12.12363 -12.07047 -11.69057 -11.55027 -11.44823 -11.33649 -11.23478 -11.04447 -10.75018 -10.47861 -10.28282 -10.00190 -9.71691 -8.10042 -6.20010 1.21253 1.42455 1.44286 1.55445 1.87749 2.18804 2.45602 3.21523 3.34827 3.75316 3.82743 3.94180 4.03825 4.09102 4.21665 4.25016 4.43724 4.51708 4.64395 4.68480 4.75201 4.80102 4.86985 4.94634 5.03023 5.05670 5.06204 5.15242 5.15624 5.32783 5.34609 5.39109 5.42222 5.52897 5.66800 5.67946 5.70753 5.91941 5.97833 5.98784 6.10493 6.38933 6.92001 7.17322 7.47873 7.64425 8.99766 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.049626 B = 0.002878 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.080441 B = 9725.601627 C = 9898.546968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.007 3.993 3 Si 0.955 3.045 4 H -0.261 1.261 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.525 4.525 8 H 0.062 0.938 9 C 0.039 3.961 10 H -0.001 1.001 11 C -0.085 4.085 12 C -0.123 4.123 13 C 0.168 3.832 14 H 0.067 0.933 15 N -0.722 5.722 16 C 0.698 3.302 17 O -0.639 6.639 18 N -0.726 5.726 19 C 0.194 3.806 20 H 0.067 0.933 21 C -0.185 4.185 22 C -0.135 4.135 23 C -0.092 4.092 24 C -0.116 4.116 25 C -0.117 4.117 26 C -0.103 4.103 27 H 0.259 0.741 28 H 0.037 0.963 29 H 0.025 0.975 30 H 0.066 0.934 31 H 0.044 0.956 32 H 0.410 0.590 33 H 0.412 0.588 34 H 0.073 0.927 35 H 0.108 0.892 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.059 0.941 39 H 0.093 0.907 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.061 0.939 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.419 -22.906 7.999 26.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.191 4.191 3 Si 0.781 3.219 4 H -0.185 1.185 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.563 4.563 8 H 0.080 0.920 9 C 0.020 3.980 10 H 0.017 0.983 11 C -0.124 4.124 12 C -0.162 4.162 13 C 0.062 3.938 14 H 0.085 0.915 15 N -0.377 5.377 16 C 0.398 3.602 17 O -0.520 6.520 18 N -0.382 5.382 19 C 0.089 3.911 20 H 0.085 0.915 21 C -0.204 4.204 22 C -0.154 4.154 23 C -0.129 4.129 24 C -0.154 4.154 25 C -0.155 4.155 26 C -0.141 4.141 27 H 0.068 0.932 28 H 0.056 0.944 29 H 0.044 0.956 30 H 0.085 0.915 31 H 0.063 0.937 32 H 0.247 0.753 33 H 0.248 0.752 34 H 0.092 0.908 35 H 0.126 0.874 36 H 0.104 0.896 37 H 0.109 0.891 38 H 0.078 0.922 39 H 0.112 0.888 40 H 0.098 0.902 41 H 0.104 0.896 42 H 0.080 0.920 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 9.278 -23.055 7.644 26.001 hybrid contribution 0.149 1.740 0.205 1.759 sum 9.428 -21.315 7.849 24.593 Atomic orbital electron populations 1.70127 1.07471 1.27101 1.51630 1.25824 0.95608 1.02675 0.95009 0.85543 0.79339 0.79676 0.77320 1.18529 1.21010 1.20947 1.21544 0.93194 0.91480 1.50085 0.92026 1.19395 0.93000 0.92674 0.92921 0.98324 1.21860 0.98849 0.92863 0.98852 1.22529 0.99038 0.95844 0.98781 1.21524 0.91554 0.86592 0.94097 0.91525 1.45058 1.19585 1.06610 1.66438 1.16225 0.84118 0.81344 0.78500 1.90881 1.21745 1.81648 1.57769 1.45059 1.18727 1.08259 1.66132 1.19622 0.95943 0.80083 0.95418 0.91510 1.22344 1.01063 0.99348 0.97670 1.22320 0.99086 0.95659 0.98321 1.20572 0.98578 0.96352 0.97394 1.21611 1.01702 0.96010 0.96089 1.21845 0.95681 0.94589 1.03401 1.22654 0.98205 0.93322 0.99915 0.93224 0.94384 0.95592 0.91490 0.93737 0.75312 0.75181 0.90842 0.87442 0.89594 0.89149 0.92173 0.88829 0.90187 0.89603 0.91999 0.90490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.71 12.63 21.44 0.27 -54.44 16 2 C 0.01 0.40 5.35 84.65 0.45 0.85 16 3 Si 0.96 43.45 29.54 68.60 2.03 45.47 16 4 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 6 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 7 C -0.52 -28.42 8.36 25.60 0.21 -28.20 16 8 H 0.06 3.19 7.77 -2.91 -0.02 3.17 16 9 C 0.04 1.96 2.73 -10.47 -0.03 1.93 16 10 H 0.00 -0.08 8.14 -2.38 -0.02 -0.10 16 11 C -0.09 -4.13 5.60 31.32 0.18 -3.95 16 12 C -0.12 -4.92 6.55 31.39 0.21 -4.72 16 13 C 0.17 6.22 3.23 46.14 0.15 6.37 16 14 H 0.07 2.76 7.56 -2.39 -0.02 2.75 16 15 N -0.72 -21.01 5.11 -452.31 -2.31 -23.32 16 16 C 0.70 21.79 8.51 179.05 1.52 23.31 16 17 O -0.64 -26.28 15.66 -3.98 -0.06 -26.34 16 18 N -0.73 -15.79 5.06 -462.32 -2.34 -18.13 16 19 C 0.19 4.04 2.70 44.06 0.12 4.16 16 20 H 0.07 1.77 7.58 -2.38 -0.02 1.75 16 21 C -0.18 -4.07 9.32 27.03 0.25 -3.82 16 22 C -0.13 -2.22 9.80 27.03 0.27 -1.95 16 23 C -0.09 -0.95 6.12 29.66 0.18 -0.77 16 24 C -0.12 -1.19 6.01 30.73 0.18 -1.00 16 25 C -0.12 -1.45 5.48 30.73 0.17 -1.28 16 26 C -0.10 -4.00 5.89 31.89 0.19 -3.81 16 27 H 0.26 14.60 8.31 -92.70 -0.77 13.83 16 28 H 0.04 1.90 7.83 -2.39 -0.02 1.88 16 29 H 0.03 1.36 8.06 -2.39 -0.02 1.34 16 30 H 0.07 2.45 8.04 -2.39 -0.02 2.43 16 31 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.41 9.05 8.58 -92.71 -0.80 8.26 16 33 H 0.41 6.05 8.60 -92.71 -0.80 5.25 16 34 H 0.07 2.07 8.06 -2.92 -0.02 2.05 16 35 H 0.11 1.64 8.06 -2.91 -0.02 1.61 16 36 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.06 0.73 8.12 -2.39 -0.02 0.72 16 39 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.09 0.83 8.11 -2.39 -0.02 0.81 16 42 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 43 H 0.08 2.75 7.92 -2.38 -0.02 2.73 16 Total: -1.00 -70.00 344.53 1.04 -68.97 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: -0.60 Total: 20.68 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: 4.05 Total: -12.88 kcal Atomic # 7 Polarization: -91.52 SS G_CDS: -4.38 Total: -95.90 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: -0.06 Total: -26.34 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -70.00 1.04 -68.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584762682.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.310 kcal (2) G-P(sol) polarization free energy of solvation -70.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.01 seconds