Wall clock time and date at job start Mon Mar 30 2020 23:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.53007 * 109.47191 * 125.18460 * 3 2 1 5 5 C 1.52998 * 109.47211 * 179.97438 * 4 3 2 6 6 C 1.52995 * 109.47164 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.47484 * 180.02562 * 6 5 4 8 8 C 1.50700 * 109.47301 * 175.83649 * 7 6 5 9 9 O 1.21293 * 120.00041 * 353.77567 * 8 7 6 10 10 N 1.34779 * 119.99766 * 173.78031 * 8 7 6 11 11 C 1.37098 * 119.99827 * 356.36679 * 10 8 7 12 12 H 1.08005 * 119.99830 * 232.00911 * 11 10 8 13 13 C 1.38954 * 120.00254 * 52.01237 * 11 10 8 14 14 N 1.31406 * 119.99984 * 206.11719 * 13 11 10 15 15 Si 1.86806 * 119.99759 * 26.11407 * 13 11 10 16 16 H 1.48498 * 109.47055 * 89.66702 * 15 13 11 17 17 H 1.48498 * 109.46909 * 209.66227 * 15 13 11 18 18 H 1.48499 * 109.47128 * 329.66639 * 15 13 11 19 19 C 1.46496 * 119.99703 * 176.09270 * 10 8 7 20 20 C 1.54266 * 110.03315 * 237.90535 * 19 10 8 21 21 C 1.54959 * 104.16339 * 217.13861 * 20 19 10 22 22 C 1.54891 * 102.77891 * 37.88668 * 21 20 19 23 23 C 1.53872 * 110.03266 * 120.69135 * 19 10 8 24 24 H 1.08999 * 109.47924 * 5.18157 * 3 2 1 25 25 H 1.09004 * 109.46900 * 245.17964 * 3 2 1 26 26 H 1.08994 * 109.46946 * 59.99584 * 4 3 2 27 27 H 1.09004 * 109.46794 * 299.99569 * 4 3 2 28 28 H 1.09004 * 109.46715 * 59.99794 * 5 4 3 29 29 H 1.08997 * 109.47307 * 300.00098 * 5 4 3 30 30 H 1.08995 * 109.47262 * 60.00140 * 6 5 4 31 31 H 1.09004 * 109.47050 * 300.00096 * 6 5 4 32 32 H 1.09006 * 109.46508 * 55.83452 * 7 6 5 33 33 H 1.09001 * 109.47097 * 295.84197 * 7 6 5 34 34 H 0.96996 * 120.00016 * 180.02562 * 14 13 11 35 35 H 1.09000 * 110.02012 * 359.29739 * 19 10 8 36 36 H 1.09009 * 110.48562 * 335.79032 * 20 19 10 37 37 H 1.09002 * 110.48967 * 98.42687 * 20 19 10 38 38 H 1.08999 * 110.71919 * 279.57584 * 21 20 19 39 39 H 1.09005 * 110.92475 * 156.29535 * 21 20 19 40 40 H 1.08994 * 110.48885 * 203.40511 * 22 21 20 41 41 H 1.09004 * 110.59435 * 80.81589 * 22 21 20 42 42 H 1.08998 * 110.03135 * 238.56734 * 23 19 10 43 43 H 1.09003 * 110.03182 * 359.97438 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1176 0.8321 -1.1790 5 6 4.6476 0.8333 -1.1786 6 6 5.1572 1.6642 -2.3579 7 6 6.6872 1.6649 -2.3580 8 6 7.1892 2.3968 -3.5759 9 8 6.4067 2.7725 -4.4231 10 7 8.5077 2.6338 -3.7239 11 6 9.3840 2.2756 -2.7322 12 1 10.0833 3.0003 -2.3418 13 6 9.3727 0.9803 -2.2295 14 7 9.7910 0.7467 -1.0059 15 14 8.7628 -0.4291 -3.2931 16 1 9.8991 -0.9958 -4.0631 17 1 8.1760 -1.4839 -2.4282 18 1 7.7285 0.0721 -4.2335 19 6 9.0051 3.2687 -4.9469 20 6 10.0441 2.3564 -5.6309 21 6 11.1004 3.3404 -6.1940 22 6 11.1859 4.4212 -5.0878 23 6 9.7304 4.5811 -4.6020 24 1 2.9719 -1.0226 -0.0928 25 1 2.9711 0.4322 0.9328 26 1 2.7538 1.8553 -1.0862 27 1 2.7545 0.4005 -2.1118 28 1 5.0117 -0.1899 -1.2712 29 1 5.0104 1.2650 -0.2459 30 1 4.7931 2.6874 -2.2658 31 1 4.7944 1.2320 -3.2905 32 1 7.0510 0.6375 -2.3758 33 1 7.0504 2.1633 -1.4592 34 1 9.7834 -0.1575 -0.6550 35 1 8.1771 3.4674 -5.6274 36 1 10.4989 1.6838 -4.9035 37 1 9.5810 1.7894 -6.4385 38 1 10.7598 3.7756 -7.1336 39 1 12.0626 2.8454 -6.3256 40 1 11.5561 5.3601 -5.4994 41 1 11.8256 4.0848 -4.2718 42 1 9.2550 5.4166 -5.1158 43 1 9.7120 4.7459 -3.5246 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588930456.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:51 Heat of formation + Delta-G solvation = -33.668925 kcal Electronic energy + Delta-G solvation = -21964.172250 eV Core-core repulsion = 18815.501098 eV Total energy + Delta-G solvation = -3148.671152 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.31891 -37.34731 -36.91979 -35.32038 -34.17375 -32.16254 -31.69588 -28.18820 -28.09779 -26.70129 -24.58904 -22.99864 -20.95343 -20.12468 -19.53523 -19.21919 -17.49948 -16.88747 -16.06176 -15.82406 -15.54394 -14.84508 -14.48132 -14.19333 -14.03159 -13.72915 -13.61194 -13.12299 -13.02203 -12.65206 -12.51542 -12.36718 -12.08909 -11.78191 -11.47813 -11.27191 -11.09480 -11.05718 -10.87286 -10.68161 -10.62616 -10.59116 -10.49803 -10.35205 -10.21825 -10.08629 -9.87456 -9.71782 -8.96748 -8.57283 -7.52603 -6.55395 -4.21971 2.64355 2.67464 3.04290 3.16790 3.27307 3.79384 3.87061 4.08513 4.43932 4.80230 4.88177 4.89806 5.17937 5.23193 5.26283 5.41061 5.43623 5.48927 5.66463 5.82959 5.90293 5.98593 6.03511 6.13380 6.14649 6.18317 6.23025 6.23997 6.29688 6.36271 6.41710 6.43421 6.53487 6.59139 6.74303 6.82448 6.91765 6.94137 7.05680 7.44678 7.65724 7.83642 8.47949 8.95906 9.31867 9.76656 10.54421 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023940 B = 0.004214 C = 0.003877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.324434 B = 6642.174818 C = 7219.903990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C 0.211 3.789 3 C -0.030 4.030 4 C -0.115 4.115 5 C -0.121 4.121 6 C -0.105 4.105 7 C -0.121 4.121 8 C 0.495 3.505 9 O -0.599 6.599 10 N -0.467 5.467 11 C -0.345 4.345 12 H 0.098 0.902 13 C 0.083 3.917 14 N -0.850 5.850 15 Si 0.849 3.151 16 H -0.279 1.279 17 H -0.280 1.280 18 H -0.259 1.259 19 C 0.129 3.871 20 C -0.132 4.132 21 C -0.120 4.120 22 C -0.117 4.117 23 C -0.125 4.125 24 H 0.109 0.891 25 H 0.110 0.890 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.100 0.900 34 H 0.275 0.725 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.052 0.948 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.053 0.947 41 H 0.067 0.933 42 H 0.053 0.947 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.924 0.153 -0.725 2.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.127 5.127 2 C -0.106 4.106 3 C -0.070 4.070 4 C -0.154 4.154 5 C -0.158 4.158 6 C -0.143 4.143 7 C -0.161 4.161 8 C 0.285 3.715 9 O -0.484 6.484 10 N -0.188 5.188 11 C -0.472 4.472 12 H 0.115 0.885 13 C -0.126 4.126 14 N -0.484 5.484 15 Si 0.675 3.325 16 H -0.206 1.206 17 H -0.206 1.206 18 H -0.183 1.183 19 C 0.025 3.975 20 C -0.170 4.170 21 C -0.158 4.158 22 C -0.155 4.155 23 C -0.163 4.163 24 H 0.127 0.873 25 H 0.128 0.872 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.118 0.882 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.086 0.914 42 H 0.072 0.928 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.959 0.226 -0.960 4.080 hybrid contribution 0.473 -1.066 -0.427 1.242 sum -3.487 -0.840 -1.387 3.845 Atomic orbital electron populations 1.81209 1.13288 1.09180 1.09046 1.29414 0.95510 0.92846 0.92865 1.19440 0.81047 1.04101 1.02386 1.21576 0.96872 1.00179 0.96782 1.21624 0.93202 1.01118 0.99877 1.21365 0.94946 1.00296 0.97693 1.21571 0.94819 1.00667 0.99033 1.20626 0.82440 0.80744 0.87646 1.90508 1.55874 1.56343 1.45711 1.43821 1.04740 1.55004 1.15275 1.18758 1.19474 0.96361 1.12580 0.88472 1.25568 0.94679 0.97550 0.94776 1.69805 1.43606 1.22200 1.12783 0.87334 0.79896 0.82945 0.82333 1.20607 1.20579 1.18333 1.21654 0.95765 0.92018 0.88084 1.22702 0.96513 0.98359 0.99466 1.22411 0.98674 0.96940 0.97754 1.22267 0.97243 0.97747 0.98224 1.22370 0.94908 0.96966 1.02091 0.87321 0.87173 0.90984 0.91137 0.91697 0.91085 0.91676 0.91748 0.91187 0.88170 0.91466 0.90074 0.89702 0.92931 0.92312 0.92178 0.92793 0.91384 0.92831 0.90669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.27 18.54 42.15 0.78 -5.49 16 2 C 0.21 2.27 15.43 -20.76 -0.32 1.95 16 3 C -0.03 -0.22 5.70 -29.52 -0.17 -0.39 16 4 C -0.12 -1.11 5.17 -26.73 -0.14 -1.25 16 5 C -0.12 -1.46 5.21 -26.73 -0.14 -1.60 16 6 C -0.10 -1.73 4.61 -26.73 -0.12 -1.86 16 7 C -0.12 -2.47 3.72 -27.88 -0.10 -2.57 16 8 C 0.50 11.55 5.80 -10.98 -0.06 11.48 16 9 O -0.60 -14.97 15.25 5.55 0.08 -14.89 16 10 N -0.47 -10.72 1.86 -106.54 -0.20 -10.92 16 11 C -0.34 -8.33 7.26 -14.93 -0.11 -8.44 16 12 H 0.10 2.51 7.39 -52.48 -0.39 2.12 16 13 C 0.08 2.01 4.08 -17.47 -0.07 1.94 16 14 N -0.85 -21.47 13.96 55.50 0.77 -20.70 16 15 Si 0.85 19.28 24.09 -169.99 -4.10 15.18 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 18 H -0.26 -6.11 5.95 56.52 0.34 -5.78 16 19 C 0.13 2.63 3.29 -66.82 -0.22 2.41 16 20 C -0.13 -2.48 6.42 -25.03 -0.16 -2.64 16 21 C -0.12 -1.83 6.91 -24.70 -0.17 -2.00 16 22 C -0.12 -1.82 6.83 -25.07 -0.17 -1.99 16 23 C -0.12 -2.23 6.26 -25.61 -0.16 -2.39 16 24 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.11 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.06 1.13 7.89 -51.93 -0.41 0.72 16 32 H 0.07 1.48 3.40 -51.93 -0.18 1.30 16 33 H 0.10 2.07 7.77 -51.93 -0.40 1.67 16 34 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 35 H 0.08 1.74 6.95 -51.93 -0.36 1.38 16 36 H 0.08 1.77 6.41 -51.92 -0.33 1.44 16 37 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 42 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.07 1.46 6.95 -51.93 -0.36 1.10 16 LS Contribution 341.47 15.07 5.15 5.15 Total: -1.00 -28.75 341.47 -6.76 -35.51 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -7.13 Total: 3.49 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: -2.12 Total: -7.34 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: 1.36 Total: -37.10 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: 0.08 Total: -14.89 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -4.10 Total: 15.18 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -28.75 -6.76 -35.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588930456.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.839 kcal (2) G-P(sol) polarization free energy of solvation -28.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds