Wall clock time and date at job start Mon Mar 30 2020 23:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.53007 * 109.47191 * 125.18460 * 3 2 1 5 5 C 1.52998 * 109.47211 * 179.97438 * 4 3 2 6 6 C 1.52995 * 109.47164 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.47484 * 180.02562 * 6 5 4 8 8 C 1.50700 * 109.47301 * 175.83649 * 7 6 5 9 9 O 1.21293 * 120.00041 * 353.77567 * 8 7 6 10 10 N 1.34779 * 119.99766 * 173.78031 * 8 7 6 11 11 C 1.37098 * 119.99827 * 356.36679 * 10 8 7 12 12 H 1.08005 * 119.99830 * 232.00911 * 11 10 8 13 13 C 1.38954 * 120.00254 * 52.01237 * 11 10 8 14 14 N 1.31406 * 119.99984 * 206.11719 * 13 11 10 15 15 Si 1.86806 * 119.99759 * 26.11407 * 13 11 10 16 16 H 1.48498 * 109.47055 * 89.66702 * 15 13 11 17 17 H 1.48498 * 109.46909 * 209.66227 * 15 13 11 18 18 H 1.48499 * 109.47128 * 329.66639 * 15 13 11 19 19 C 1.46496 * 119.99703 * 176.09270 * 10 8 7 20 20 C 1.54266 * 110.03315 * 237.90535 * 19 10 8 21 21 C 1.54959 * 104.16339 * 217.13861 * 20 19 10 22 22 C 1.54891 * 102.77891 * 37.88668 * 21 20 19 23 23 C 1.53872 * 110.03266 * 120.69135 * 19 10 8 24 24 H 1.08999 * 109.47924 * 5.18157 * 3 2 1 25 25 H 1.09004 * 109.46900 * 245.17964 * 3 2 1 26 26 H 1.08994 * 109.46946 * 59.99584 * 4 3 2 27 27 H 1.09004 * 109.46794 * 299.99569 * 4 3 2 28 28 H 1.09004 * 109.46715 * 59.99794 * 5 4 3 29 29 H 1.08997 * 109.47307 * 300.00098 * 5 4 3 30 30 H 1.08995 * 109.47262 * 60.00140 * 6 5 4 31 31 H 1.09004 * 109.47050 * 300.00096 * 6 5 4 32 32 H 1.09006 * 109.46508 * 55.83452 * 7 6 5 33 33 H 1.09001 * 109.47097 * 295.84197 * 7 6 5 34 34 H 0.96996 * 120.00016 * 180.02562 * 14 13 11 35 35 H 1.09000 * 110.02012 * 359.29739 * 19 10 8 36 36 H 1.09009 * 110.48562 * 335.79032 * 20 19 10 37 37 H 1.09002 * 110.48967 * 98.42687 * 20 19 10 38 38 H 1.08999 * 110.71919 * 279.57584 * 21 20 19 39 39 H 1.09005 * 110.92475 * 156.29535 * 21 20 19 40 40 H 1.08994 * 110.48885 * 203.40511 * 22 21 20 41 41 H 1.09004 * 110.59435 * 80.81589 * 22 21 20 42 42 H 1.08998 * 110.03135 * 238.56734 * 23 19 10 43 43 H 1.09003 * 110.03182 * 359.97438 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1176 0.8321 -1.1790 5 6 4.6476 0.8333 -1.1786 6 6 5.1572 1.6642 -2.3579 7 6 6.6872 1.6649 -2.3580 8 6 7.1892 2.3968 -3.5759 9 8 6.4067 2.7725 -4.4231 10 7 8.5077 2.6338 -3.7239 11 6 9.3840 2.2756 -2.7322 12 1 10.0833 3.0003 -2.3418 13 6 9.3727 0.9803 -2.2295 14 7 9.7910 0.7467 -1.0059 15 14 8.7628 -0.4291 -3.2931 16 1 9.8991 -0.9958 -4.0631 17 1 8.1760 -1.4839 -2.4282 18 1 7.7285 0.0721 -4.2335 19 6 9.0051 3.2687 -4.9469 20 6 10.0441 2.3564 -5.6309 21 6 11.1004 3.3404 -6.1940 22 6 11.1859 4.4212 -5.0878 23 6 9.7304 4.5811 -4.6020 24 1 2.9719 -1.0226 -0.0928 25 1 2.9711 0.4322 0.9328 26 1 2.7538 1.8553 -1.0862 27 1 2.7545 0.4005 -2.1118 28 1 5.0117 -0.1899 -1.2712 29 1 5.0104 1.2650 -0.2459 30 1 4.7931 2.6874 -2.2658 31 1 4.7944 1.2320 -3.2905 32 1 7.0510 0.6375 -2.3758 33 1 7.0504 2.1633 -1.4592 34 1 9.7834 -0.1575 -0.6550 35 1 8.1771 3.4674 -5.6274 36 1 10.4989 1.6838 -4.9035 37 1 9.5810 1.7894 -6.4385 38 1 10.7598 3.7756 -7.1336 39 1 12.0626 2.8454 -6.3256 40 1 11.5561 5.3601 -5.4994 41 1 11.8256 4.0848 -4.2718 42 1 9.2550 5.4166 -5.1158 43 1 9.7120 4.7459 -3.5246 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588930456.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:50 Heat of formation + Delta-G solvation = -48.504334 kcal Electronic energy + Delta-G solvation = -21964.815562 eV Core-core repulsion = 18815.501098 eV Total energy + Delta-G solvation = -3149.314464 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.06330 -38.64068 -38.05609 -36.42400 -35.97297 -33.73402 -33.15246 -29.53126 -29.49848 -28.06547 -26.41474 -24.21440 -22.00790 -21.44437 -21.10554 -21.01716 -18.77572 -18.21145 -17.54869 -17.45218 -16.78778 -16.29305 -15.88876 -15.77405 -15.34574 -15.12067 -14.92405 -14.65349 -14.19265 -14.05173 -13.90703 -13.61528 -13.55423 -12.98424 -12.94379 -12.63030 -12.62512 -12.48038 -12.27800 -11.99724 -11.88791 -11.85245 -11.81009 -11.78591 -11.53728 -11.43390 -11.37282 -11.26310 -10.83309 -10.41390 -9.36727 -8.48413 -6.15902 1.20308 1.32022 1.41363 1.80326 1.85726 1.94798 2.20680 2.73157 2.92698 3.13523 3.80754 3.86492 3.99291 4.09343 4.14712 4.17238 4.33356 4.35100 4.59066 4.64779 4.67329 4.73528 4.75721 4.77293 4.81555 4.90282 4.94334 5.00329 5.02384 5.08845 5.13447 5.15963 5.24145 5.33968 5.38764 5.47496 5.49060 5.57459 5.59513 5.78703 5.99885 6.53736 6.64514 7.04023 7.45260 7.91248 8.65167 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023940 B = 0.004214 C = 0.003877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.324434 B = 6642.174818 C = 7219.903990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C 0.238 3.762 3 C -0.022 4.022 4 C -0.110 4.110 5 C -0.113 4.113 6 C -0.101 4.101 7 C -0.117 4.117 8 C 0.479 3.521 9 O -0.622 6.622 10 N -0.472 5.472 11 C -0.341 4.341 12 H 0.075 0.925 13 C 0.066 3.934 14 N -0.874 5.874 15 Si 0.890 3.110 16 H -0.283 1.283 17 H -0.261 1.261 18 H -0.276 1.276 19 C 0.116 3.884 20 C -0.133 4.133 21 C -0.110 4.110 22 C -0.111 4.111 23 C -0.121 4.121 24 H 0.134 0.866 25 H 0.138 0.862 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.093 0.907 34 H 0.282 0.718 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.054 0.946 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.055 0.945 42 H 0.070 0.930 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.366 -0.209 -0.829 1.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.190 5.190 2 C -0.078 4.078 3 C -0.061 4.061 4 C -0.149 4.149 5 C -0.151 4.151 6 C -0.139 4.139 7 C -0.157 4.157 8 C 0.271 3.729 9 O -0.509 6.509 10 N -0.192 5.192 11 C -0.468 4.468 12 H 0.093 0.907 13 C -0.141 4.141 14 N -0.509 5.509 15 Si 0.715 3.285 16 H -0.210 1.210 17 H -0.186 1.186 18 H -0.202 1.202 19 C 0.013 3.987 20 C -0.171 4.171 21 C -0.147 4.147 22 C -0.148 4.148 23 C -0.160 4.160 24 H 0.152 0.848 25 H 0.156 0.844 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.102 0.898 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.111 0.889 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.104 0.896 41 H 0.074 0.926 42 H 0.088 0.912 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.383 -0.142 -1.056 3.546 hybrid contribution 0.361 -0.877 -0.430 1.041 sum -3.021 -1.019 -1.486 3.518 Atomic orbital electron populations 1.81239 1.15289 1.11364 1.11124 1.29948 0.95923 0.90948 0.91003 1.19607 0.78654 1.05360 1.02516 1.21457 0.95006 1.00724 0.97681 1.21555 0.94739 1.00541 0.98242 1.21354 0.92189 1.01112 0.99222 1.21573 0.97417 0.99514 0.97179 1.21246 0.82462 0.80858 0.88376 1.90478 1.56284 1.57438 1.46690 1.43950 1.04650 1.54800 1.15829 1.18510 1.19149 0.96102 1.13077 0.90705 1.25785 0.94786 0.98500 0.95037 1.69831 1.44598 1.23016 1.13468 0.86728 0.78898 0.81699 0.81147 1.20996 1.18616 1.20156 1.21902 0.96040 0.93648 0.87121 1.22679 0.97025 0.98549 0.98890 1.22405 0.98277 0.95801 0.98238 1.22240 0.95149 0.99410 0.98043 1.22328 0.96651 0.96065 1.00912 0.84830 0.84421 0.91044 0.91640 0.91083 0.89790 0.91912 0.93093 0.91775 0.88851 0.90779 0.91391 0.92135 0.92703 0.90081 0.90433 0.89640 0.92586 0.91174 0.92917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -13.92 18.54 20.00 0.37 -13.55 16 2 C 0.24 4.68 15.43 89.44 1.38 6.06 16 3 C -0.02 -0.25 5.70 28.79 0.16 -0.09 16 4 C -0.11 -1.86 5.17 30.60 0.16 -1.70 16 5 C -0.11 -2.50 5.21 30.59 0.16 -2.34 16 6 C -0.10 -3.27 4.61 30.59 0.14 -3.13 16 7 C -0.12 -4.78 3.72 29.85 0.11 -4.67 16 8 C 0.48 22.72 5.80 87.66 0.51 23.23 16 9 O -0.62 -31.64 15.25 -3.07 -0.05 -31.69 16 10 N -0.47 -22.01 1.86 -609.38 -1.13 -23.14 16 11 C -0.34 -16.78 7.26 84.04 0.61 -16.17 16 12 H 0.08 4.00 7.39 -2.91 -0.02 3.98 16 13 C 0.07 3.21 4.08 84.93 0.35 3.56 16 14 N -0.87 -43.86 13.96 21.66 0.30 -43.56 16 15 Si 0.89 39.46 24.09 68.60 1.65 41.12 16 16 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 17 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 18 H -0.28 -12.99 5.95 99.48 0.59 -12.40 16 19 C 0.12 4.78 3.29 45.72 0.15 4.93 16 20 C -0.13 -4.92 6.42 31.69 0.20 -4.71 16 21 C -0.11 -3.07 6.91 31.91 0.22 -2.85 16 22 C -0.11 -3.22 6.83 31.67 0.22 -3.00 16 23 C -0.12 -4.26 6.26 31.32 0.20 -4.06 16 24 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.14 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.05 1.77 7.89 -2.39 -0.02 1.76 16 32 H 0.06 2.67 3.40 -2.38 -0.01 2.66 16 33 H 0.09 3.89 7.77 -2.39 -0.02 3.87 16 34 H 0.28 13.14 8.31 -92.71 -0.77 12.37 16 35 H 0.07 2.95 6.95 -2.39 -0.02 2.93 16 36 H 0.06 2.53 6.41 -2.38 -0.02 2.51 16 37 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 40 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 43 H 0.05 2.07 6.95 -2.39 -0.02 2.06 16 Total: -1.00 -63.48 341.47 6.58 -56.90 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: 0.87 Total: 18.87 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: 4.57 Total: -4.94 kcal Atomic # 7 Polarization: -79.80 SS G_CDS: -0.46 Total: -80.26 kcal Atomic # 8 Polarization: -31.64 SS G_CDS: -0.05 Total: -31.69 kcal Atomic # 14 Polarization: 39.46 SS G_CDS: 1.65 Total: 41.12 kcal Total: -63.48 6.58 -56.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588930456.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.395 kcal (2) G-P(sol) polarization free energy of solvation -63.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds