Wall clock time and date at job start Mon Mar 30 2020 23:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00193 * 2 1 4 4 H 1.48501 * 109.47052 * 275.00344 * 3 2 1 5 5 H 1.48501 * 109.47092 * 35.00041 * 3 2 1 6 6 H 1.48500 * 109.47178 * 155.00086 * 3 2 1 7 7 C 1.37883 * 119.99871 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99889 * 175.13402 * 7 2 1 9 9 C 1.50693 * 120.00193 * 355.13129 * 7 2 1 10 10 C 1.53036 * 109.46078 * 185.41999 * 9 7 2 11 11 C 1.53189 * 109.31180 * 178.62738 * 10 9 7 12 12 N 1.46929 * 108.77678 * 54.63535 * 11 10 9 13 13 C 1.34782 * 120.62837 * 126.36678 * 12 11 10 14 14 O 1.21592 * 119.99476 * 185.27682 * 13 12 11 15 15 N 1.34769 * 120.00184 * 5.28009 * 13 12 11 16 16 C 1.46498 * 119.99801 * 175.02286 * 15 13 12 17 17 C 1.50708 * 109.47106 * 179.97438 * 16 15 13 18 18 C 1.30797 * 124.60570 * 94.99703 * 17 16 15 19 19 C 1.51098 * 111.14887 * 179.97438 * 18 17 16 20 20 C 1.54640 * 104.72759 * 343.59226 * 19 18 17 21 21 C 1.51100 * 124.44270 * 274.99803 * 17 16 15 22 22 C 1.46924 * 118.73916 * 306.64388 * 12 11 10 23 23 C 1.52766 * 109.00559 * 53.30708 * 22 12 11 24 24 H 0.97001 * 119.99912 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.46198 * 305.39477 * 9 7 2 26 26 H 1.08997 * 109.49678 * 58.67868 * 10 9 7 27 27 H 1.09001 * 109.52609 * 298.59652 * 10 9 7 28 28 H 1.09005 * 109.59119 * 294.85050 * 11 10 9 29 29 H 1.09001 * 109.70454 * 174.49367 * 11 10 9 30 30 H 0.97001 * 119.99923 * 355.01353 * 15 13 12 31 31 H 1.08999 * 109.47700 * 59.99951 * 16 15 13 32 32 H 1.08999 * 109.47470 * 299.99588 * 16 15 13 33 33 H 1.07997 * 124.40275 * 359.95159 * 18 17 16 34 34 H 1.09002 * 110.38873 * 224.78343 * 19 18 17 35 35 H 1.09009 * 110.48554 * 102.45491 * 19 18 17 36 36 H 1.08993 * 111.03524 * 266.60400 * 20 19 18 37 37 H 1.08999 * 111.03459 * 142.66463 * 20 19 18 38 38 H 1.09000 * 110.38705 * 77.62629 * 21 17 16 39 39 H 1.08996 * 110.39293 * 315.35315 * 21 17 16 40 40 H 1.09001 * 109.58697 * 173.13976 * 22 12 11 41 41 H 1.09004 * 109.58591 * 293.56822 * 22 12 11 42 42 H 1.09003 * 109.55885 * 185.55350 * 23 22 12 43 43 H 1.09000 * 109.35933 * 65.50227 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3910 2.1075 -1.3947 5 1 1.5035 2.6199 0.8031 6 1 3.5956 1.4119 0.5917 7 6 2.0045 -1.1941 -0.0005 8 1 3.0816 -1.1958 -0.0799 9 6 1.2552 -2.4969 0.1096 10 6 2.2534 -3.6514 0.2214 11 6 1.4882 -4.9704 0.3677 12 7 0.5435 -5.0956 -0.7507 13 6 0.5440 -6.1953 -1.5301 14 8 -0.1751 -6.2467 -2.5092 15 7 1.3415 -7.2377 -1.2242 16 6 1.2632 -8.4740 -2.0062 17 6 2.2515 -9.4746 -1.4645 18 6 1.9633 -10.4060 -0.5927 19 6 3.1800 -11.2389 -0.2625 20 6 4.1865 -10.9309 -1.3954 21 6 3.7093 -9.5346 -1.8574 22 6 -0.3974 -3.9968 -1.0070 23 6 0.3853 -2.6911 -1.1344 24 1 -0.4850 0.8401 0.0004 25 1 0.6215 -2.4775 0.9964 26 1 2.8881 -3.5003 1.0946 27 1 2.8714 -3.6869 -0.6758 28 1 0.9408 -4.9728 1.3103 29 1 2.1885 -5.8055 0.3498 30 1 1.9674 -7.1694 -0.4863 31 1 1.4980 -8.2600 -3.0489 32 1 0.2557 -8.8843 -1.9376 33 1 0.9837 -10.5592 -0.1647 34 1 2.9252 -12.2987 -0.2588 35 1 3.5931 -10.9450 0.7026 36 1 4.1026 -11.6593 -2.2019 37 1 5.2061 -10.8893 -1.0124 38 1 4.2726 -8.7534 -1.3470 39 1 3.8159 -9.4347 -2.9375 40 1 -0.9393 -4.1883 -1.9332 41 1 -1.1017 -3.9181 -0.1787 42 1 -0.3098 -1.8564 -1.2263 43 1 1.0203 -2.7354 -2.0192 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595800781.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:50 Heat of formation + Delta-G solvation = -22.705817 kcal Electronic energy + Delta-G solvation = -21760.419869 eV Core-core repulsion = 18612.224113 eV Total energy + Delta-G solvation = -3148.195756 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.00176 -38.84477 -36.89066 -34.50460 -33.45246 -31.16149 -30.49038 -29.52553 -28.60126 -26.27903 -24.92619 -22.95716 -22.11797 -21.13841 -20.17704 -19.17034 -18.28260 -17.54487 -16.35050 -16.12111 -15.69472 -15.33262 -15.12106 -14.54372 -14.02700 -13.72323 -13.55234 -13.09981 -12.97652 -12.76114 -12.58757 -12.24050 -12.03956 -11.85521 -11.79557 -11.46382 -11.36733 -11.32436 -11.09587 -10.94376 -10.64846 -10.41503 -10.05589 -9.80395 -9.52963 -9.17084 -9.02647 -8.94071 -8.86849 -8.36104 -7.85782 -6.01160 -4.06773 1.75916 3.21194 3.29439 3.36959 3.39839 3.59442 4.28400 4.31359 4.32590 4.42625 4.74728 4.85241 5.11433 5.28894 5.29495 5.39161 5.45044 5.49643 5.55754 5.65518 5.72153 5.76033 5.78565 5.88316 5.93300 6.07866 6.27528 6.29343 6.45218 6.51742 6.59874 6.63134 6.70234 6.84051 7.00268 7.17316 7.26382 7.52657 7.71978 7.94513 8.05666 8.34556 8.42044 8.96835 8.98198 9.58042 11.05123 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.031122 B = 0.003409 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.455304 B = 8211.555830 C = 8715.579306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.890 3.110 4 H -0.282 1.282 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.514 4.514 8 H 0.054 0.946 9 C 0.050 3.950 10 C -0.124 4.124 11 C 0.114 3.886 12 N -0.618 5.618 13 C 0.704 3.296 14 O -0.601 6.601 15 N -0.749 5.749 16 C 0.189 3.811 17 C -0.153 4.153 18 C -0.143 4.143 19 C -0.101 4.101 20 C -0.125 4.125 21 C -0.093 4.093 22 C 0.126 3.874 23 C -0.122 4.122 24 H 0.260 0.740 25 H 0.029 0.971 26 H 0.060 0.940 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.395 0.605 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.125 0.875 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.056 0.944 42 H 0.099 0.901 43 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.628 -19.914 0.642 20.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.140 4.140 3 Si 0.718 3.282 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.552 4.552 8 H 0.072 0.928 9 C 0.031 3.969 10 C -0.162 4.162 11 C -0.010 4.010 12 N -0.354 5.354 13 C 0.406 3.594 14 O -0.481 6.481 15 N -0.407 5.407 16 C 0.065 3.935 17 C -0.153 4.153 18 C -0.162 4.162 19 C -0.138 4.138 20 C -0.162 4.162 21 C -0.130 4.130 22 C 0.004 3.996 23 C -0.160 4.160 24 H 0.070 0.930 25 H 0.047 0.953 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.232 0.768 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.143 0.857 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.074 0.926 42 H 0.117 0.883 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 4.925 -19.813 -0.070 20.416 hybrid contribution 0.783 1.012 0.410 1.344 sum 5.708 -18.801 0.340 19.651 Atomic orbital electron populations 1.69880 1.05868 1.26482 1.50556 1.24971 0.94843 0.99060 0.95087 0.86620 0.79956 0.83709 0.77941 1.20834 1.21214 1.19945 1.21176 0.93123 0.90649 1.50282 0.92777 1.18628 0.92565 0.91420 0.94261 1.22015 0.98992 0.94355 1.00848 1.21706 0.91339 0.98772 0.89144 1.47438 1.38513 1.17752 1.31734 1.15874 0.80725 0.80098 0.82709 1.90864 1.46442 1.82128 1.28660 1.45297 1.43818 1.13854 1.37770 1.19690 0.96906 0.81795 0.95113 1.22169 0.95980 0.97661 0.99535 1.23355 0.98920 0.96819 0.97112 1.21371 0.93711 0.99627 0.99126 1.22445 0.98868 0.96756 0.98173 1.21295 0.92628 0.97494 1.01617 1.21675 0.90891 0.86188 1.00816 1.21941 0.99952 0.94614 0.99519 0.92979 0.95254 0.92128 0.92967 0.91962 0.92347 0.76848 0.91163 0.91341 0.85670 0.91108 0.90456 0.91103 0.90897 0.90559 0.90971 0.90545 0.92578 0.88330 0.94338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.92 11.53 55.43 0.64 -24.28 16 2 C 0.06 1.68 5.36 -17.82 -0.10 1.58 16 3 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.51 -13.76 8.49 -34.44 -0.29 -14.05 16 8 H 0.05 1.44 7.75 -52.48 -0.41 1.03 16 9 C 0.05 1.19 2.01 -91.74 -0.18 1.00 16 10 C -0.12 -2.41 5.30 -26.61 -0.14 -2.55 16 11 C 0.11 1.85 6.39 -3.71 -0.02 1.83 16 12 N -0.62 -11.51 2.98 -178.75 -0.53 -12.04 16 13 C 0.70 13.07 8.30 -86.92 -0.72 12.35 16 14 O -0.60 -13.23 15.77 5.28 0.08 -13.15 16 15 N -0.75 -10.61 5.46 -66.41 -0.36 -10.97 16 16 C 0.19 2.33 6.11 -5.19 -0.03 2.30 16 17 C -0.15 -1.48 5.54 -100.81 -0.56 -2.04 16 18 C -0.14 -1.23 10.60 -35.78 -0.38 -1.61 16 19 C -0.10 -0.71 6.81 -26.83 -0.18 -0.89 16 20 C -0.12 -0.87 7.19 -25.01 -0.18 -1.05 16 21 C -0.09 -0.80 6.75 -26.83 -0.18 -0.98 16 22 C 0.13 2.60 6.41 -3.93 -0.03 2.58 16 23 C -0.12 -2.85 5.18 -26.83 -0.14 -2.99 16 24 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 25 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.06 0.77 5.64 -51.93 -0.29 0.47 16 30 H 0.40 4.85 5.95 -40.82 -0.24 4.61 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.07 0.87 8.12 -51.93 -0.42 0.45 16 33 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.51 8.14 -51.92 -0.42 0.09 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.08 1.62 6.99 -51.93 -0.36 1.26 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.10 2.57 6.30 -51.93 -0.33 2.24 16 43 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 340.02 15.07 5.12 5.12 Total: -1.00 -30.35 340.02 -10.31 -40.67 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -7.11 Total: 3.17 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -3.14 Total: -4.52 kcal Atomic # 7 Polarization: -47.04 SS G_CDS: -0.26 Total: -47.30 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: 0.08 Total: -13.15 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.35 -10.31 -40.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595800781.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.959 kcal (2) G-P(sol) polarization free energy of solvation -30.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds