Wall clock time and date at job start Mon Mar 30 2020 23:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00193 * 2 1 4 4 H 1.48501 * 109.47052 * 275.00344 * 3 2 1 5 5 H 1.48501 * 109.47092 * 35.00041 * 3 2 1 6 6 H 1.48500 * 109.47178 * 155.00086 * 3 2 1 7 7 C 1.37883 * 119.99871 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99889 * 175.13402 * 7 2 1 9 9 C 1.50693 * 120.00193 * 355.13129 * 7 2 1 10 10 C 1.53036 * 109.46078 * 185.41999 * 9 7 2 11 11 C 1.53189 * 109.31180 * 178.62738 * 10 9 7 12 12 N 1.46929 * 108.77678 * 54.63535 * 11 10 9 13 13 C 1.34782 * 120.62837 * 126.36678 * 12 11 10 14 14 O 1.21592 * 119.99476 * 185.27682 * 13 12 11 15 15 N 1.34769 * 120.00184 * 5.28009 * 13 12 11 16 16 C 1.46498 * 119.99801 * 175.02286 * 15 13 12 17 17 C 1.50708 * 109.47106 * 179.97438 * 16 15 13 18 18 C 1.30797 * 124.60570 * 94.99703 * 17 16 15 19 19 C 1.51098 * 111.14887 * 179.97438 * 18 17 16 20 20 C 1.54640 * 104.72759 * 343.59226 * 19 18 17 21 21 C 1.51100 * 124.44270 * 274.99803 * 17 16 15 22 22 C 1.46924 * 118.73916 * 306.64388 * 12 11 10 23 23 C 1.52766 * 109.00559 * 53.30708 * 22 12 11 24 24 H 0.97001 * 119.99912 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.46198 * 305.39477 * 9 7 2 26 26 H 1.08997 * 109.49678 * 58.67868 * 10 9 7 27 27 H 1.09001 * 109.52609 * 298.59652 * 10 9 7 28 28 H 1.09005 * 109.59119 * 294.85050 * 11 10 9 29 29 H 1.09001 * 109.70454 * 174.49367 * 11 10 9 30 30 H 0.97001 * 119.99923 * 355.01353 * 15 13 12 31 31 H 1.08999 * 109.47700 * 59.99951 * 16 15 13 32 32 H 1.08999 * 109.47470 * 299.99588 * 16 15 13 33 33 H 1.07997 * 124.40275 * 359.95159 * 18 17 16 34 34 H 1.09002 * 110.38873 * 224.78343 * 19 18 17 35 35 H 1.09009 * 110.48554 * 102.45491 * 19 18 17 36 36 H 1.08993 * 111.03524 * 266.60400 * 20 19 18 37 37 H 1.08999 * 111.03459 * 142.66463 * 20 19 18 38 38 H 1.09000 * 110.38705 * 77.62629 * 21 17 16 39 39 H 1.08996 * 110.39293 * 315.35315 * 21 17 16 40 40 H 1.09001 * 109.58697 * 173.13976 * 22 12 11 41 41 H 1.09004 * 109.58591 * 293.56822 * 22 12 11 42 42 H 1.09003 * 109.55885 * 185.55350 * 23 22 12 43 43 H 1.09000 * 109.35933 * 65.50227 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3910 2.1075 -1.3947 5 1 1.5035 2.6199 0.8031 6 1 3.5956 1.4119 0.5917 7 6 2.0045 -1.1941 -0.0005 8 1 3.0816 -1.1958 -0.0799 9 6 1.2552 -2.4969 0.1096 10 6 2.2534 -3.6514 0.2214 11 6 1.4882 -4.9704 0.3677 12 7 0.5435 -5.0956 -0.7507 13 6 0.5440 -6.1953 -1.5301 14 8 -0.1751 -6.2467 -2.5092 15 7 1.3415 -7.2377 -1.2242 16 6 1.2632 -8.4740 -2.0062 17 6 2.2515 -9.4746 -1.4645 18 6 1.9633 -10.4060 -0.5927 19 6 3.1800 -11.2389 -0.2625 20 6 4.1865 -10.9309 -1.3954 21 6 3.7093 -9.5346 -1.8574 22 6 -0.3974 -3.9968 -1.0070 23 6 0.3853 -2.6911 -1.1344 24 1 -0.4850 0.8401 0.0004 25 1 0.6215 -2.4775 0.9964 26 1 2.8881 -3.5003 1.0946 27 1 2.8714 -3.6869 -0.6758 28 1 0.9408 -4.9728 1.3103 29 1 2.1885 -5.8055 0.3498 30 1 1.9674 -7.1694 -0.4863 31 1 1.4980 -8.2600 -3.0489 32 1 0.2557 -8.8843 -1.9376 33 1 0.9837 -10.5592 -0.1647 34 1 2.9252 -12.2987 -0.2588 35 1 3.5931 -10.9450 0.7026 36 1 4.1026 -11.6593 -2.2019 37 1 5.2061 -10.8893 -1.0124 38 1 4.2726 -8.7534 -1.3470 39 1 3.8159 -9.4347 -2.9375 40 1 -0.9393 -4.1883 -1.9332 41 1 -1.1017 -3.9181 -0.1787 42 1 -0.3098 -1.8564 -1.2263 43 1 1.0203 -2.7354 -2.0192 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595800781.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:50 Heat of formation + Delta-G solvation = -39.586266 kcal Electronic energy + Delta-G solvation = -21761.151860 eV Core-core repulsion = 18612.224113 eV Total energy + Delta-G solvation = -3148.927747 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.41431 -39.62243 -38.48087 -35.77472 -35.27371 -32.94673 -31.95126 -30.60904 -29.24643 -28.00289 -26.05387 -24.62021 -23.76685 -21.82433 -21.64870 -20.58154 -19.51106 -18.67109 -18.31298 -17.36693 -16.68949 -16.56783 -16.26086 -16.18104 -15.31538 -15.13096 -14.87744 -14.79786 -14.47126 -14.14792 -13.79638 -13.54689 -13.39771 -13.00828 -12.83154 -12.74476 -12.54986 -12.47257 -12.17670 -12.14399 -12.01429 -11.93125 -11.90582 -11.41549 -11.36463 -10.95332 -10.80402 -10.40954 -10.22209 -9.73012 -9.38990 -8.07898 -6.20629 0.97864 1.41389 1.43355 1.52973 1.89733 2.12767 2.44605 3.03393 3.19590 3.59238 3.68768 4.06770 4.17657 4.23375 4.25672 4.32560 4.43561 4.48240 4.53151 4.59463 4.66995 4.72663 4.89014 4.90241 4.91193 4.97164 5.05031 5.05815 5.19353 5.22653 5.23828 5.40114 5.45166 5.47484 5.50131 5.60528 5.66161 5.91488 5.97811 6.05875 6.10266 6.39123 6.91202 6.99298 7.47298 7.54669 8.96649 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.031122 B = 0.003409 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.455304 B = 8211.555830 C = 8715.579306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.013 3.987 3 Si 0.950 3.050 4 H -0.282 1.282 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.533 4.533 8 H 0.052 0.948 9 C 0.046 3.954 10 C -0.116 4.116 11 C 0.118 3.882 12 N -0.621 5.621 13 C 0.701 3.299 14 O -0.640 6.640 15 N -0.730 5.730 16 C 0.190 3.810 17 C -0.170 4.170 18 C -0.129 4.129 19 C -0.101 4.101 20 C -0.121 4.121 21 C -0.095 4.095 22 C 0.138 3.862 23 C -0.110 4.110 24 H 0.260 0.740 25 H 0.007 0.993 26 H 0.075 0.925 27 H 0.044 0.956 28 H 0.076 0.924 29 H 0.098 0.902 30 H 0.407 0.593 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.130 0.870 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.068 0.932 43 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.307 -21.728 1.819 22.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.186 4.186 3 Si 0.777 3.223 4 H -0.208 1.208 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.571 4.571 8 H 0.070 0.930 9 C 0.028 3.972 10 C -0.154 4.154 11 C -0.004 4.004 12 N -0.357 5.357 13 C 0.402 3.598 14 O -0.523 6.523 15 N -0.388 5.388 16 C 0.067 3.933 17 C -0.170 4.170 18 C -0.148 4.148 19 C -0.138 4.138 20 C -0.159 4.159 21 C -0.132 4.132 22 C 0.015 3.985 23 C -0.149 4.149 24 H 0.069 0.931 25 H 0.025 0.975 26 H 0.093 0.907 27 H 0.062 0.938 28 H 0.094 0.906 29 H 0.116 0.884 30 H 0.246 0.754 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.148 0.852 34 H 0.102 0.898 35 H 0.105 0.895 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 6.648 -21.663 1.135 22.688 hybrid contribution 0.252 1.536 0.041 1.558 sum 6.900 -20.126 1.176 21.309 Atomic orbital electron populations 1.70008 1.07099 1.27111 1.51293 1.25726 0.95641 1.02300 0.94960 0.85662 0.79039 0.79861 0.77786 1.20817 1.20914 1.19056 1.21575 0.93296 0.92203 1.49996 0.92970 1.18601 0.93097 0.92440 0.93094 1.21873 0.98161 0.94273 1.01131 1.21804 0.91420 0.98391 0.88778 1.47393 1.38610 1.17308 1.32439 1.16046 0.80913 0.80694 0.82126 1.90836 1.48209 1.82905 1.30344 1.45206 1.42590 1.13204 1.37818 1.19723 0.97656 0.81488 0.94459 1.21989 0.96155 0.97888 1.00974 1.23615 0.99771 0.95860 0.95566 1.21431 0.92816 1.00068 0.99498 1.22458 0.99492 0.95645 0.98289 1.21322 0.91844 0.98651 1.01397 1.21337 0.90919 0.85584 1.00643 1.21705 0.99193 0.95249 0.98711 0.93068 0.97456 0.90662 0.93761 0.90562 0.88356 0.75450 0.92438 0.91819 0.85180 0.89810 0.89459 0.90740 0.89696 0.90613 0.91502 0.91525 0.91986 0.91391 0.96115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.43 11.53 21.45 0.25 -52.18 16 2 C 0.01 0.69 5.36 84.66 0.45 1.14 16 3 Si 0.95 43.33 29.54 68.60 2.03 45.36 16 4 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 7 C -0.53 -28.74 8.49 25.60 0.22 -28.52 16 8 H 0.05 2.77 7.75 -2.91 -0.02 2.74 16 9 C 0.05 2.23 2.01 -11.52 -0.02 2.21 16 10 C -0.12 -4.36 5.30 30.67 0.16 -4.20 16 11 C 0.12 3.57 6.39 86.36 0.55 4.13 16 12 N -0.62 -22.56 2.98 -837.71 -2.50 -25.06 16 13 C 0.70 25.41 8.30 179.05 1.49 26.90 16 14 O -0.64 -28.35 15.77 -4.00 -0.06 -28.42 16 15 N -0.73 -19.42 5.46 -482.29 -2.63 -22.05 16 16 C 0.19 4.48 6.11 85.64 0.52 5.01 16 17 C -0.17 -2.95 5.54 -16.15 -0.09 -3.04 16 18 C -0.13 -1.86 10.60 25.98 0.28 -1.58 16 19 C -0.10 -1.08 6.81 30.53 0.21 -0.87 16 20 C -0.12 -1.33 7.19 31.71 0.23 -1.11 16 21 C -0.10 -1.42 6.75 30.53 0.21 -1.22 16 22 C 0.14 5.78 6.41 86.22 0.55 6.33 16 23 C -0.11 -5.30 5.18 30.53 0.16 -5.14 16 24 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 25 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 26 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 27 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 29 H 0.10 2.20 5.64 -2.39 -0.01 2.19 16 30 H 0.41 8.77 5.95 -92.71 -0.55 8.22 16 31 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.06 1.57 8.12 -2.39 -0.02 1.55 16 33 H 0.13 1.74 8.06 -2.91 -0.02 1.71 16 34 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 36 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.07 2.90 6.99 -2.39 -0.02 2.89 16 41 H 0.06 2.50 8.14 -2.38 -0.02 2.49 16 42 H 0.07 3.69 6.30 -2.39 -0.02 3.68 16 43 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -66.45 340.02 2.43 -64.02 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: 0.44 Total: 18.28 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: 4.91 Total: 0.03 kcal Atomic # 7 Polarization: -94.40 SS G_CDS: -4.88 Total: -99.28 kcal Atomic # 8 Polarization: -28.35 SS G_CDS: -0.06 Total: -28.42 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -66.45 2.43 -64.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595800781.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.437 kcal (2) G-P(sol) polarization free energy of solvation -66.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds