Wall clock time and date at job start Mon Mar 30 2020 23:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00274 * 2 1 4 4 H 1.48499 * 109.47367 * 240.00128 * 3 2 1 5 5 H 1.48503 * 109.46980 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47106 * 119.99667 * 3 2 1 7 7 C 1.37880 * 119.99808 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99707 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99880 * 0.27226 * 7 2 1 10 10 H 1.08996 * 109.49341 * 59.73032 * 9 7 2 11 11 C 1.53035 * 109.49445 * 179.78866 * 9 7 2 12 12 C 1.53045 * 109.53790 * 181.31775 * 11 9 7 13 13 C 1.53188 * 109.31316 * 298.63914 * 12 11 9 14 14 N 1.46927 * 108.77625 * 54.63203 * 13 12 11 15 15 C 1.34770 * 120.62986 * 126.43560 * 14 13 12 16 16 O 1.21593 * 120.00005 * 174.96762 * 15 14 13 17 17 N 1.34773 * 120.00080 * 354.96734 * 15 14 13 18 18 C 1.46507 * 120.00118 * 185.07823 * 17 15 14 19 19 C 1.50702 * 109.47108 * 179.97438 * 18 17 15 20 20 C 1.30522 * 124.45223 * 95.02222 * 19 18 17 21 21 C 1.51097 * 111.10759 * 179.97438 * 20 19 18 22 22 C 1.54644 * 104.72239 * 16.43701 * 21 20 19 23 23 C 1.51107 * 124.44233 * 274.71812 * 19 18 17 24 24 C 1.46929 * 118.76456 * 306.40949 * 14 13 12 25 25 H 0.97001 * 119.99997 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.46337 * 301.34157 * 11 9 7 27 27 H 1.09005 * 109.46014 * 61.30370 * 11 9 7 28 28 H 1.08998 * 109.49270 * 58.58909 * 12 11 9 29 29 H 1.08994 * 109.49795 * 178.65207 * 12 11 9 30 30 H 1.08995 * 109.58649 * 174.42334 * 13 12 11 31 31 H 1.09006 * 109.58447 * 294.84817 * 13 12 11 32 32 H 0.96997 * 120.00223 * 5.07295 * 17 15 14 33 33 H 1.09007 * 109.46496 * 299.99451 * 18 17 15 34 34 H 1.08999 * 109.47463 * 59.99568 * 18 17 15 35 35 H 1.08001 * 124.44183 * 359.97438 * 20 19 18 36 36 H 1.09007 * 110.38790 * 135.24375 * 21 20 19 37 37 H 1.08992 * 110.38855 * 257.62732 * 21 20 19 38 38 H 1.08993 * 111.03350 * 93.39827 * 22 21 20 39 39 H 1.09000 * 111.03028 * 217.29463 * 22 21 20 40 40 H 1.08997 * 110.38379 * 282.39870 * 23 19 18 41 41 H 1.08996 * 110.38991 * 44.77694 * 23 19 18 42 42 H 1.08998 * 109.56983 * 293.79036 * 24 14 13 43 43 H 1.09002 * 109.61922 * 173.35396 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0073 10 1 0.6242 -2.5527 -0.8975 11 6 2.2449 -3.6628 -0.0118 12 6 1.4809 -4.9884 -0.0519 13 6 0.6044 -5.1060 1.1989 14 7 -0.2542 -3.9170 1.2882 15 6 -1.5906 -4.0427 1.4092 16 8 -2.2816 -3.0558 1.5741 17 7 -2.1611 -5.2621 1.3475 18 6 -3.6205 -5.3900 1.3672 19 6 -3.9983 -6.8467 1.2871 20 6 -4.2545 -7.6009 2.3211 21 6 -4.6006 -9.0087 1.8952 22 6 -4.1069 -9.1097 0.4332 23 6 -4.1365 -7.6242 -0.0012 24 6 0.3712 -2.5883 1.2437 25 1 -0.4850 0.8401 -0.0004 26 1 2.8881 -3.5877 -0.8887 27 1 2.8551 -3.6226 0.8905 28 1 0.8516 -5.0187 -0.9413 29 1 2.1896 -5.8160 -0.0793 30 1 -0.0153 -5.9998 1.1281 31 1 1.2374 -5.1668 2.0843 32 1 -1.6056 -6.0552 1.2900 33 1 -4.0101 -4.9635 2.2916 34 1 -4.0434 -4.8579 0.5150 35 1 -4.2233 -7.2630 3.3464 36 1 -4.0814 -9.7336 2.5222 37 1 -5.6780 -9.1661 1.9438 38 1 -3.0957 -9.5141 0.3888 39 1 -4.7913 -9.7056 -0.1706 40 1 -5.0824 -7.3871 -0.4881 41 1 -3.3010 -7.4077 -0.6669 42 1 0.9848 -2.4436 2.1328 43 1 -0.4020 -1.8210 1.2019 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595819188.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:52 Heat of formation + Delta-G solvation = -20.157886 kcal Electronic energy + Delta-G solvation = -22046.131233 eV Core-core repulsion = 18898.045964 eV Total energy + Delta-G solvation = -3148.085270 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.77032 -38.74967 -36.77690 -34.27359 -33.22506 -31.72024 -30.07747 -29.47071 -28.52605 -25.52159 -24.98169 -23.63127 -21.78020 -21.08939 -20.03703 -19.03256 -18.18639 -17.41845 -16.23906 -15.93880 -15.53766 -15.15263 -14.92070 -14.50998 -13.72521 -13.63793 -13.59751 -13.36493 -12.93703 -12.60194 -12.53071 -12.15976 -12.03721 -11.89223 -11.60657 -11.47343 -11.28134 -11.20266 -10.94532 -10.86757 -10.49126 -10.37432 -10.19024 -9.84098 -9.47495 -9.06332 -9.00882 -8.85779 -8.66590 -8.38048 -7.58643 -5.94640 -4.03760 1.87054 3.34388 3.40837 3.41979 3.46989 3.91813 4.37058 4.40184 4.44430 4.53760 4.80427 4.93982 5.19198 5.32434 5.35267 5.39335 5.51342 5.52817 5.58651 5.59959 5.65367 5.78150 5.83431 5.89243 5.98303 6.01686 6.19530 6.34723 6.38877 6.62523 6.70267 6.70983 6.85087 6.89048 7.02505 7.11588 7.39454 7.55852 7.79353 7.97432 8.10967 8.44981 8.65250 8.99648 9.31565 9.61583 11.10464 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.030883 B = 0.003831 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.437991 B = 7307.638394 C = 7836.648927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.063 3.937 3 Si 0.893 3.107 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.040 3.960 10 H 0.028 0.972 11 C -0.109 4.109 12 C -0.133 4.133 13 C 0.116 3.884 14 N -0.623 5.623 15 C 0.700 3.300 16 O -0.585 6.585 17 N -0.753 5.753 18 C 0.188 3.812 19 C -0.149 4.149 20 C -0.147 4.147 21 C -0.101 4.101 22 C -0.125 4.125 23 C -0.094 4.094 24 C 0.130 3.870 25 H 0.264 0.736 26 H 0.050 0.950 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.391 0.609 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.125 0.875 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.038 0.962 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.034 -18.806 2.390 19.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.140 4.140 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.075 0.925 9 C 0.020 3.980 10 H 0.046 0.954 11 C -0.147 4.147 12 C -0.172 4.172 13 C -0.008 4.008 14 N -0.359 5.359 15 C 0.402 3.598 16 O -0.462 6.462 17 N -0.412 5.412 18 C 0.064 3.936 19 C -0.149 4.149 20 C -0.166 4.166 21 C -0.138 4.138 22 C -0.163 4.163 23 C -0.131 4.131 24 C 0.009 3.991 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.227 0.773 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.143 0.857 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.091 0.909 42 H 0.057 0.943 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.712 -17.899 2.492 19.278 hybrid contribution 0.750 0.474 -0.005 0.888 sum -5.962 -17.424 2.486 18.583 Atomic orbital electron populations 1.69888 1.05710 1.26909 1.49128 1.25058 0.94877 0.99220 0.94871 0.86656 0.79558 0.83232 0.78522 1.20337 1.21274 1.20266 1.21039 0.92832 0.90166 1.52061 0.92453 1.18984 0.92613 0.92154 0.94209 0.95385 1.21612 0.98533 0.94093 1.00483 1.21947 0.98593 0.99108 0.97519 1.21484 0.93324 0.87560 0.98467 1.47780 1.03531 1.08835 1.75790 1.15954 0.82511 0.83066 0.78283 1.90917 1.61745 1.36757 1.56819 1.45323 1.06488 1.07445 1.81984 1.19657 0.80476 0.91084 1.02424 1.22128 1.01564 0.95347 0.95899 1.23270 0.99383 0.95425 0.98560 1.21362 1.01139 0.94995 0.96256 1.22483 1.01583 0.96316 0.95884 1.21335 1.02390 0.93548 0.95819 1.22173 0.98297 0.80514 0.98103 0.92612 0.93099 0.93213 0.92210 0.92392 0.92189 0.92197 0.77330 0.91323 0.91325 0.85700 0.91123 0.90663 0.91057 0.91020 0.90510 0.90933 0.94339 0.85996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.07 11.40 55.43 0.63 -25.44 16 2 C 0.06 1.76 5.31 -17.82 -0.09 1.67 16 3 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.33 8.56 -34.44 -0.29 -14.63 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.04 1.00 2.25 -91.65 -0.21 0.79 16 10 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 11 C -0.11 -2.20 5.11 -26.69 -0.14 -2.34 16 12 C -0.13 -2.17 6.08 -26.61 -0.16 -2.33 16 13 C 0.12 1.84 6.43 -3.71 -0.02 1.82 16 14 N -0.62 -12.95 2.97 -178.50 -0.53 -13.48 16 15 C 0.70 14.86 8.29 -86.93 -0.72 14.14 16 16 O -0.58 -15.14 15.78 5.28 0.08 -15.06 16 17 N -0.75 -11.92 5.46 -66.41 -0.36 -12.29 16 18 C 0.19 2.64 6.11 -5.19 -0.03 2.61 16 19 C -0.15 -1.60 5.52 -100.73 -0.56 -2.16 16 20 C -0.15 -1.40 10.58 -35.70 -0.38 -1.77 16 21 C -0.10 -0.76 6.81 -26.82 -0.18 -0.95 16 22 C -0.13 -0.94 7.20 -24.92 -0.18 -1.12 16 23 C -0.09 -0.87 6.77 -26.74 -0.18 -1.05 16 24 C 0.13 3.24 5.39 -3.71 -0.02 3.22 16 25 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 26 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.77 5.57 -51.93 -0.29 0.48 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.39 5.19 5.92 -40.82 -0.24 4.95 16 33 H 0.07 1.01 8.12 -51.93 -0.42 0.59 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 43 H 0.12 3.57 5.17 -51.93 -0.27 3.30 16 LS Contribution 339.76 15.07 5.12 5.12 Total: -1.00 -32.06 339.76 -10.35 -42.40 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -7.10 Total: 4.36 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: -3.17 Total: -2.10 kcal Atomic # 7 Polarization: -50.95 SS G_CDS: -0.26 Total: -51.21 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: 0.08 Total: -15.06 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.06 -10.35 -42.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595819188.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.247 kcal (2) G-P(sol) polarization free energy of solvation -32.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds